RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 GNAI1P63096 354 aa7.97□□□□□ -1.13
SYNE1-239ENST00000545694 IRX6P78412 446 aaPredicted RBP7.97□□□□□ -1.13
SYNE1-239ENST00000545694 PRR20EP86478 221 aa7.97□□□□□ -1.13
SYNE1-239ENST00000545694 PRR20CP86479 221 aa7.97□□□□□ -1.13
SYNE1-239ENST00000545694 PRR20DP86480 221 aa7.97□□□□□ -1.13
SYNE1-239ENST00000545694 PRR20BP86481 221 aa7.97□□□□□ -1.13
SYNE1-239ENST00000545694 PRR20AP86496 221 aa7.97□□□□□ -1.13
SYNE1-239ENST00000545694 PSME1Q06323 249 aa7.97□□□□□ -1.13
SYNE1-239ENST00000545694 EIF4A2Q14240 407 aaKnown RBP7.97□□□□□ -1.13
SYNE1-239ENST00000545694 RRS1Q15050 365 aaKnown RBP7.97□□□□□ -1.13
SYNE1-239ENST00000545694 NEUROD2Q15784 382 aa7.97□□□□□ -1.13
SYNE1-239ENST00000545694 ABTB2Q8N961 1025 aa7.97□□□□□ -1.13
SYNE1-239ENST00000545694 IFT57Q9NWB7 429 aa7.97□□□□□ -1.13
SYNE1-239ENST00000545694 DAXXQ9UER7 740 aaPredicted RBP7.97□□□□□ -1.13
SYNE1-239ENST00000545694 MAP3K19Q56UN5 1328 aa7.97□□□□□ -1.13
SYNE1-239ENST00000545694 PLEKHG2Q9H7P9 1386 aa7.97□□□□□ -1.13
SYNE1-239ENST00000545694 C1orf167Q5SNV9 1468 aa7.96□□□□□ -1.13
SYNE1-239ENST00000545694 TRPM3Q9HCF6 1732 aaPredicted RBP7.96□□□□□ -1.14
SYNE1-239ENST00000545694 FAM187AA6NFU0 413 aa7.96□□□□□ -1.14
SYNE1-239ENST00000545694 POTECB2RU33 542 aa7.96□□□□□ -1.14
SYNE1-239ENST00000545694 HTATSF1O43719 755 aaKnown RBP7.96□□□□□ -1.14
SYNE1-239ENST00000545694 ATF3P18847 181 aa7.96□□□□□ -1.14
SYNE1-239ENST00000545694 AMPHP49418 695 aa7.96□□□□□ -1.14
SYNE1-239ENST00000545694 RARSP54136 660 aaKnown RBP7.96□□□□□ -1.14
SYNE1-239ENST00000545694 ALDH1L2Q3SY69 923 aa7.96□□□□□ -1.14
SYNE1-239ENST00000545694 ESCO1Q5FWF5 840 aa7.96□□□□□ -1.14
SYNE1-239ENST00000545694 ZNF775Q96BV0 537 aaPredicted RBP7.96□□□□□ -1.14
SYNE1-239ENST00000545694 ABCC6O95255 1503 aa7.96□□□□□ -1.14
SYNE1-239ENST00000545694 LMTK3Q96Q04 1460 aa7.95□□□□□ -1.14
SYNE1-239ENST00000545694 STRCP1A6NGW2 1772 aa7.95□□□□□ -1.14
SYNE1-239ENST00000545694 STRCQ7RTU9 1775 aa7.95□□□□□ -1.14
SYNE1-239ENST00000545694 SLIT3O75094 1523 aa7.95□□□□□ -1.14
SYNE1-239ENST00000545694 NFAT5O94916 1531 aa7.95□□□□□ -1.14
SYNE1-239ENST00000545694 GPR37O15354 613 aa7.95□□□□□ -1.14
SYNE1-239ENST00000545694 PLCB2Q00722 1185 aa7.95□□□□□ -1.14
SYNE1-239ENST00000545694 FUT2Q10981 343 aa7.95□□□□□ -1.14
SYNE1-239ENST00000545694 FOXC1Q12948 553 aa7.95□□□□□ -1.14
SYNE1-239ENST00000545694 GAS2L2Q8NHY3 880 aa7.95□□□□□ -1.14
SYNE1-239ENST00000545694 PHOX2BQ99453 314 aa7.95□□□□□ -1.14
SYNE1-239ENST00000545694 CHMP4BQ9H444 224 aaKnown RBP7.95□□□□□ -1.14
SYNE1-239ENST00000545694 RRP7AQ9Y3A4 280 aaKnown RBP7.95□□□□□ -1.14
SYNE1-239ENST00000545694 IGSF1Q8N6C5 1336 aa7.95□□□□□ -1.14
SYNE1-239ENST00000545694 MSH6P52701 1360 aa7.95□□□□□ -1.14
SYNE1-239ENST00000545694 SENP3-EIF4A1A0A087X0R7 540 aa7.94□□□□□ -1.14
SYNE1-239ENST00000545694 IPO8O15397 1037 aaKnown RBP7.94□□□□□ -1.14
SYNE1-239ENST00000545694 MORN1Q5T089 497 aa7.94□□□□□ -1.14
SYNE1-239ENST00000545694 IP6K1Q92551 441 aa7.94□□□□□ -1.14
SYNE1-239ENST00000545694 BABAM1Q9NWV8 329 aa7.94□□□□□ -1.14
SYNE1-239ENST00000545694 ALS2Q96Q42 1657 aa7.94□□□□□ -1.14
SYNE1-239ENST00000545694 SOS1Q07889 1333 aaPredicted RBP7.94□□□□□ -1.14
SYNE1-239ENST00000545694 KIF16BQ96L93 1317 aa7.94□□□□□ -1.14
SYNE1-239ENST00000545694 FANCIQ9NVI1 1328 aa7.94□□□□□ -1.14
SYNE1-239ENST00000545694 TMEM94Q12767 1356 aa7.94□□□□□ -1.14
SYNE1-239ENST00000545694 HMOX1P09601 288 aa7.93□□□□□ -1.14
SYNE1-239ENST00000545694 ZNF853P0CG23 659 aa7.93□□□□□ -1.14
SYNE1-239ENST00000545694 CANXP27824 592 aaKnown RBP7.93□□□□□ -1.14
SYNE1-239ENST00000545694 HOXC9P31274 260 aa7.93□□□□□ -1.14
SYNE1-239ENST00000545694 HSP90AB2PQ58FF8 381 aa7.93□□□□□ -1.14
SYNE1-239ENST00000545694 SULT6B1Q6IMI4 303 aa7.93□□□□□ -1.14
SYNE1-239ENST00000545694 B4GALNT3Q6L9W6 998 aa7.93□□□□□ -1.14
SYNE1-239ENST00000545694 EXOC6Q8TAG9 804 aa7.93□□□□□ -1.14
SYNE1-239ENST00000545694 CHMP4AQ9BY43 222 aa7.93□□□□□ -1.14
SYNE1-239ENST00000545694 SLC27A5Q9Y2P5 690 aa7.93□□□□□ -1.14
SYNE1-239ENST00000545694 USP19O94966 1318 aa7.93□□□□□ -1.14
SYNE1-239ENST00000545694 NPHP3Q7Z494 1330 aa7.93□□□□□ -1.14
SYNE1-239ENST00000545694 XIRP1Q702N8 1843 aaKnown RBP7.92□□□□□ -1.14
SYNE1-239ENST00000545694 FBLN1P23142 703 aa7.92□□□□□ -1.14
SYNE1-239ENST00000545694 ATP6V1AP38606 617 aa7.92□□□□□ -1.14
SYNE1-239ENST00000545694 GCGRP47871 477 aa7.92□□□□□ -1.14
SYNE1-239ENST00000545694 ZKSCAN2Q63HK3 967 aa7.92□□□□□ -1.14
SYNE1-239ENST00000545694 CENPQQ7L2Z9 268 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-239ENST00000545694 FAM160A2Q8N612 972 aaPredicted RBP7.92□□□□□ -1.14
SYNE1-239ENST00000545694 ARHGAP45Q92619 1136 aa7.92□□□□□ -1.14
SYNE1-239ENST00000545694 THAP11Q96EK4 314 aa7.92□□□□□ -1.14
SYNE1-239ENST00000545694 PHACTR3Q96KR7 559 aa7.92□□□□□ -1.14
SYNE1-239ENST00000545694 CRBNQ96SW2 442 aa7.92□□□□□ -1.14
SYNE1-239ENST00000545694 PKD2L1Q9P0L9 805 aa7.92□□□□□ -1.14
SYNE1-239ENST00000545694 KIAA0232Q92628 1395 aa7.92□□□□□ -1.14
SYNE1-239ENST00000545694 FAM208AQ9UK61 1670 aaKnown RBP7.92□□□□□ -1.14
SYNE1-239ENST00000545694 ST8SIA5O15466 376 aa7.91□□□□□ -1.14
SYNE1-239ENST00000545694 EXOSC9Q06265 439 aaKnown RBP7.91□□□□□ -1.14
SYNE1-239ENST00000545694 KRT28Q7Z3Y7 464 aa7.91□□□□□ -1.14
SYNE1-239ENST00000545694 RTF1Q92541 710 aaKnown RBP7.91□□□□□ -1.14
SYNE1-239ENST00000545694 FCF1Q9Y324 198 aaKnown RBP7.91□□□□□ -1.14
SYNE1-239ENST00000545694 CAMTA1Q9Y6Y1 1673 aa7.9□□□□□ -1.14
SYNE1-239ENST00000545694 MED1Q15648 1581 aaPredicted RBP7.9□□□□□ -1.14
SYNE1-239ENST00000545694 NCAPD2Q15021 1401 aa7.9□□□□□ -1.14
SYNE1-239ENST00000545694 TCERG1O14776 1098 aaKnown RBP7.9□□□□□ -1.14
SYNE1-239ENST00000545694 FOXO3O43524 673 aa7.9□□□□□ -1.14
SYNE1-239ENST00000545694 PLIN1O60240 522 aa7.9□□□□□ -1.14
SYNE1-239ENST00000545694 BCAR3O75815 825 aa7.9□□□□□ -1.14
SYNE1-239ENST00000545694 GCP02774 474 aa7.9□□□□□ -1.14
SYNE1-239ENST00000545694 ORAI2Q96SN7 254 aa7.9□□□□□ -1.14
SYNE1-239ENST00000545694 PRDM9Q9NQV7 894 aa7.9□□□□□ -1.14
SYNE1-239ENST00000545694 OVOS2A0A0G2JMS6 1433 aa7.89□□□□□ -1.15
SYNE1-239ENST00000545694 CHL1O00533 1208 aa7.89□□□□□ -1.15
SYNE1-239ENST00000545694 FMNL1O95466 1100 aaPredicted RBP7.89□□□□□ -1.15
SYNE1-239ENST00000545694 AMOTQ4VCS5 1084 aa7.89□□□□□ -1.15
SYNE1-239ENST00000545694 ATF7IPQ6VMQ6 1270 aa7.89□□□□□ -1.15
SYNE1-239ENST00000545694 ARHGEF25Q86VW2 580 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms