RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 RAD50Q92878 1312 aa18.11■□□□□ 0.49
USP28-214ENST00000545540 AXIN2Q9Y2T1 843 aa18.11■□□□□ 0.49
USP28-214ENST00000545540 RGPD1P0DJD0 1748 aa18.11■□□□□ 0.49
USP28-214ENST00000545540 ANAPC15P60006 121 aa18.11■□□□□ 0.49
USP28-214ENST00000545540 TSC1Q92574 1164 aa18.11■□□□□ 0.49
USP28-214ENST00000545540 DDX17Q92841 729 aaKnown RBP18.11■□□□□ 0.49
USP28-214ENST00000545540 IP6K1Q92551 441 aa18.11■□□□□ 0.49
USP28-214ENST00000545540 ADCY9O60503 1353 aa18.11■□□□□ 0.49
USP28-214ENST00000545540 STX6O43752 255 aa18.1■□□□□ 0.49
USP28-214ENST00000545540 MBD3O95983 291 aa18.1■□□□□ 0.49
USP28-214ENST00000545540 GJB2P29033 226 aa18.1■□□□□ 0.49
USP28-214ENST00000545540 VSIG10Q8N0Z9 540 aa18.1■□□□□ 0.49
USP28-214ENST00000545540 WDR33Q9C0J8 1336 aaKnown RBP18.1■□□□□ 0.49
USP28-214ENST00000545540 FAM177BA6PVY3 158 aa18.1■□□□□ 0.49
USP28-214ENST00000545540 TTC12Q9H892 705 aaPredicted RBP18.1■□□□□ 0.49
USP28-214ENST00000545540 RPAP1Q9BWH6 1393 aaPredicted RBP18.1■□□□□ 0.49
USP28-214ENST00000545540 FOSBP53539 338 aa18.1■□□□□ 0.49
USP28-214ENST00000545540 C1orf141Q5JVX7 400 aa18.1■□□□□ 0.49
USP28-214ENST00000545540 UBE2Q2Q8WVN8 375 aa18.1■□□□□ 0.49
USP28-214ENST00000545540 SUCLG2Q96I99 432 aa18.1■□□□□ 0.49
USP28-214ENST00000545540 PDLIM2Q96JY6 352 aa18.1■□□□□ 0.49
USP28-214ENST00000545540 RAB11FIP3O75154 756 aa18.09■□□□□ 0.49
USP28-214ENST00000545540 EAF2Q96CJ1 260 aaPredicted RBP18.09■□□□□ 0.49
USP28-214ENST00000545540 INTS4Q96HW7 963 aaKnown RBP18.09■□□□□ 0.49
USP28-214ENST00000545540 BICC1Q9H694 974 aaKnown RBP18.09■□□□□ 0.49
USP28-214ENST00000545540 NOL7Q9UMY1 257 aaKnown RBP18.09■□□□□ 0.49
USP28-214ENST00000545540 LIMCH1Q9UPQ0 1083 aa18.09■□□□□ 0.49
USP28-214ENST00000545540 DIP2AQ14689 1571 aa18.09■□□□□ 0.49
USP28-214ENST00000545540 PDRG1Q9NUG6 133 aa18.09■□□□□ 0.49
USP28-214ENST00000545540 REREQ9P2R6 1566 aa18.09■□□□□ 0.49
USP28-214ENST00000545540 OFD1O75665 1012 aa18.08■□□□□ 0.49
USP28-214ENST00000545540 CAMK4Q16566 473 aa18.08■□□□□ 0.49
USP28-214ENST00000545540 TTC14Q96N46 770 aa18.08■□□□□ 0.49
USP28-214ENST00000545540 PIK3C2AO00443 1686 aa18.08■□□□□ 0.49
USP28-214ENST00000545540 ZSCAN22P10073 491 aaPredicted RBP18.08■□□□□ 0.48
USP28-214ENST00000545540 SLFNL1Q499Z3 407 aa18.08■□□□□ 0.48
USP28-214ENST00000545540 DNTTIP2Q5QJE6 756 aaKnown RBP18.08■□□□□ 0.48
USP28-214ENST00000545540 ME3Q16798 604 aa18.07■□□□□ 0.48
USP28-214ENST00000545540 ECHDC1Q9NTX5 307 aa18.07■□□□□ 0.48
USP28-214ENST00000545540 HYPKQ9NX55 129 aa18.07■□□□□ 0.48
USP28-214ENST00000545540 TFIP11Q9UBB9 837 aaKnown RBP18.07■□□□□ 0.48
USP28-214ENST00000545540 SASH1O94885 1247 aa18.07■□□□□ 0.48
USP28-214ENST00000545540 NMIQ13287 307 aaPredicted RBP18.07■□□□□ 0.48
USP28-214ENST00000545540 DBF4Q9UBU7 674 aaPredicted RBP18.07■□□□□ 0.48
USP28-214ENST00000545540 ZKSCAN5Q9Y2L8 839 aa18.07■□□□□ 0.48
USP28-214ENST00000545540 RNMTO43148 476 aaKnown RBP18.06■□□□□ 0.48
USP28-214ENST00000545540 GIGYF1O75420 1035 aaPredicted RBP18.06■□□□□ 0.48
USP28-214ENST00000545540 GLRX3O76003 335 aaKnown RBP18.06■□□□□ 0.48
USP28-214ENST00000545540 GCP02774 474 aa18.06■□□□□ 0.48
USP28-214ENST00000545540 KAZALD1Q96I82 304 aa18.06■□□□□ 0.48
USP28-214ENST00000545540 TAOK2Q9UL54 1235 aa18.06■□□□□ 0.48
USP28-214ENST00000545540 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.06■□□□□ 0.48
USP28-214ENST00000545540 BCL11BQ9C0K0 894 aaPredicted RBP18.06■□□□□ 0.48
USP28-214ENST00000545540 SPC24Q8NBT2 197 aa18.05■□□□□ 0.48
USP28-214ENST00000545540 ANKRD24Q8TF21 1146 aa18.05■□□□□ 0.48
USP28-214ENST00000545540 RBM8AQ9Y5S9 174 aaKnown RBP18.05■□□□□ 0.48
USP28-214ENST00000545540 A0A0D9SFI3 127 aa18.05■□□□□ 0.48
USP28-214ENST00000545540 TRHP20396 242 aaPredicted RBP18.05■□□□□ 0.48
USP28-214ENST00000545540 ST3GAL1Q11201 340 aa18.05■□□□□ 0.48
USP28-214ENST00000545540 RIC3Q7Z5B4 369 aa18.05■□□□□ 0.48
USP28-214ENST00000545540 LRRC2Q9BYS8 371 aa18.05■□□□□ 0.48
USP28-214ENST00000545540 PLEKHO1Q53GL0 409 aaPredicted RBP18.05■□□□□ 0.48
USP28-214ENST00000545540 EPHA10Q5JZY3 1008 aa18.05■□□□□ 0.48
USP28-214ENST00000545540 TPCN1Q9ULQ1 816 aa18.05■□□□□ 0.48
USP28-214ENST00000545540 NWD1Q149M9 1564 aa18.05■□□□□ 0.48
USP28-214ENST00000545540 ATP5J2-PTCD1G3V325 749 aa18.04■□□□□ 0.48
USP28-214ENST00000545540 PTCD1O75127 700 aaKnown RBP18.04■□□□□ 0.48
USP28-214ENST00000545540 F13A1P00488 732 aa18.04■□□□□ 0.48
USP28-214ENST00000545540 FSD1Q9BTV5 496 aa18.04■□□□□ 0.48
USP28-214ENST00000545540 UQCRHLA0A096LP55 91 aa18.04■□□□□ 0.48
USP28-214ENST00000545540 UQCRHP07919 91 aa18.04■□□□□ 0.48
USP28-214ENST00000545540 G3BP1Q13283 466 aaKnown RBP eCLIP18.04■□□□□ 0.48
USP28-214ENST00000545540 CCDC129Q6ZRS4 1044 aa18.04■□□□□ 0.48
USP28-214ENST00000545540 CABLES1Q8TDN4 633 aa18.04■□□□□ 0.48
USP28-214ENST00000545540 DDX11Q96FC9 970 aa18.04■□□□□ 0.48
USP28-214ENST00000545540 TOPAZ1Q8N9V7 1692 aa18.03■□□□□ 0.48
USP28-214ENST00000545540 AKAP4Q5JQC9 854 aa18.03■□□□□ 0.48
USP28-214ENST00000545540 ZNF589Q86UQ0 364 aaPredicted RBP18.03■□□□□ 0.48
USP28-214ENST00000545540 CYP46A1Q9Y6A2 500 aa18.03■□□□□ 0.48
USP28-214ENST00000545540 ADCY5O95622 1261 aa18.03■□□□□ 0.48
USP28-214ENST00000545540 KSR2Q6VAB6 950 aa18.03■□□□□ 0.48
USP28-214ENST00000545540 NFATC2IPQ8NCF5 419 aa18.03■□□□□ 0.48
USP28-214ENST00000545540 SYAP1Q96A49 352 aaPredicted RBP18.03■□□□□ 0.48
USP28-214ENST00000545540 SEC62Q99442 399 aaKnown RBP18.03■□□□□ 0.48
USP28-214ENST00000545540 NALCNQ8IZF0 1738 aa18.03■□□□□ 0.48
USP28-214ENST00000545540 NLRP2Q9NX02 1062 aa18.03■□□□□ 0.48
USP28-214ENST00000545540 XRN1Q8IZH2 1706 aaKnown RBP18.02■□□□□ 0.48
USP28-214ENST00000545540 CEMIPQ8WUJ3 1361 aa18.02■□□□□ 0.48
USP28-214ENST00000545540 MYD88Q99836 296 aa18.02■□□□□ 0.48
USP28-214ENST00000545540 FMN2Q9NZ56 1722 aa18.02■□□□□ 0.48
USP28-214ENST00000545540 CEBPZQ03701 1054 aaKnown RBP18.02■□□□□ 0.47
USP28-214ENST00000545540 CREB3L3Q68CJ9 461 aa18.02■□□□□ 0.47
USP28-214ENST00000545540 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.02■□□□□ 0.47
USP28-214ENST00000545540 CDC37L1Q7L3B6 337 aa18.02■□□□□ 0.47
USP28-214ENST00000545540 CKAP2LQ8IYA6 745 aa18.02■□□□□ 0.47
USP28-214ENST00000545540 MTMR6Q9Y217 621 aa18.02■□□□□ 0.47
USP28-214ENST00000545540 GRM8O00222 908 aa18.01■□□□□ 0.47
USP28-214ENST00000545540 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.01■□□□□ 0.47
USP28-214ENST00000545540 PXDNQ92626 1479 aa18.01■□□□□ 0.47
USP28-214ENST00000545540 LARP1BQ659C4 914 aaKnown RBP18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 111.8 ms