RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 OSBPL3Q9H4L5 887 aa16.32■□□□□ 0.2
PTPN1-202ENST00000541713 USP25Q9UHP3 1055 aa16.32■□□□□ 0.2
PTPN1-202ENST00000541713 CYP2E1P05181 493 aaPredicted RBP16.31■□□□□ 0.2
PTPN1-202ENST00000541713 CCDC129Q6ZRS4 1044 aa16.31■□□□□ 0.2
PTPN1-202ENST00000541713 DBF4Q9UBU7 674 aaPredicted RBP16.31■□□□□ 0.2
PTPN1-202ENST00000541713 RNMTO43148 476 aaKnown RBP16.31■□□□□ 0.2
PTPN1-202ENST00000541713 DNM1Q05193 864 aaKnown RBP16.31■□□□□ 0.2
PTPN1-202ENST00000541713 RUFY3Q7L099 469 aa16.31■□□□□ 0.2
PTPN1-202ENST00000541713 XAGE3Q8WTP9 111 aa16.31■□□□□ 0.2
PTPN1-202ENST00000541713 SGSM2O43147 1006 aa16.31■□□□□ 0.2
PTPN1-202ENST00000541713 HCLS1P14317 486 aaPredicted RBP16.31■□□□□ 0.2
PTPN1-202ENST00000541713 RAPGEF4Q8WZA2 1011 aa16.31■□□□□ 0.2
PTPN1-202ENST00000541713 EAF2Q96CJ1 260 aaPredicted RBP16.31■□□□□ 0.2
PTPN1-202ENST00000541713 DDX11Q96FC9 970 aa16.31■□□□□ 0.2
PTPN1-202ENST00000541713 FAM13BQ9NYF5 915 aa16.31■□□□□ 0.2
PTPN1-202ENST00000541713 FAM177BA6PVY3 158 aa16.3■□□□□ 0.2
PTPN1-202ENST00000541713 PDRG1Q9NUG6 133 aa16.3■□□□□ 0.2
PTPN1-202ENST00000541713 GJB2P29033 226 aa16.3■□□□□ 0.2
PTPN1-202ENST00000541713 UBE3BQ7Z3V4 1068 aa16.3■□□□□ 0.2
PTPN1-202ENST00000541713 USP16Q9Y5T5 823 aa16.3■□□□□ 0.2
PTPN1-202ENST00000541713 SYT1P21579 422 aa16.29■□□□□ 0.2
PTPN1-202ENST00000541713 SPC24Q8NBT2 197 aa16.29■□□□□ 0.2
PTPN1-202ENST00000541713 SEC62Q99442 399 aaKnown RBP16.29■□□□□ 0.2
PTPN1-202ENST00000541713 BRD1O95696 1058 aa16.29■□□□□ 0.2
PTPN1-202ENST00000541713 NMIQ13287 307 aaPredicted RBP16.29■□□□□ 0.2
PTPN1-202ENST00000541713 KRT28Q7Z3Y7 464 aa16.29■□□□□ 0.2
PTPN1-202ENST00000541713 KIF24Q5T7B8 1368 aa16.29■□□□□ 0.2
PTPN1-202ENST00000541713 PTMSP20962 102 aa16.29■□□□□ 0.2
PTPN1-202ENST00000541713 GIGYF1O75420 1035 aaPredicted RBP16.28■□□□□ 0.2
PTPN1-202ENST00000541713 EPHA10Q5JZY3 1008 aa16.28■□□□□ 0.2
PTPN1-202ENST00000541713 ECHDC1Q9NTX5 307 aa16.28■□□□□ 0.2
PTPN1-202ENST00000541713 SALL3Q9BXA9 1300 aa16.28■□□□□ 0.2
PTPN1-202ENST00000541713 RAB11FIP3O75154 756 aa16.28■□□□□ 0.2
PTPN1-202ENST00000541713 HSP90B1P14625 803 aaKnown RBP16.28■□□□□ 0.2
PTPN1-202ENST00000541713 HSPA4P34932 840 aa16.28■□□□□ 0.2
PTPN1-202ENST00000541713 ZSCAN30Q86W11 494 aa16.28■□□□□ 0.2
PTPN1-202ENST00000541713 TSC1Q92574 1164 aa16.28■□□□□ 0.2
PTPN1-202ENST00000541713 KDRP35968 1356 aa16.27■□□□□ 0.2
PTPN1-202ENST00000541713 HSP90AA2PQ14568 343 aaPredicted RBP16.27■□□□□ 0.2
PTPN1-202ENST00000541713 DDX46Q7L014 1031 aaKnown RBP16.27■□□□□ 0.2
PTPN1-202ENST00000541713 RAB11FIP4Q86YS3 637 aa16.27■□□□□ 0.2
PTPN1-202ENST00000541713 CHST3Q7LGC8 479 aa16.27■□□□□ 0.19
PTPN1-202ENST00000541713 LSG1Q9H089 658 aaKnown RBP16.27■□□□□ 0.19
PTPN1-202ENST00000541713 TSPY26PQ9H489 355 aa16.27■□□□□ 0.19
PTPN1-202ENST00000541713 RBM8AQ9Y5S9 174 aaKnown RBP16.27■□□□□ 0.19
PTPN1-202ENST00000541713 TECPR2O15040 1411 aa16.27■□□□□ 0.19
PTPN1-202ENST00000541713 RGPD8O14715 1765 aaPredicted RBP16.27■□□□□ 0.19
PTPN1-202ENST00000541713 STX6O43752 255 aa16.27■□□□□ 0.19
PTPN1-202ENST00000541713 GLRX3O76003 335 aaKnown RBP16.27■□□□□ 0.19
PTPN1-202ENST00000541713 AKAP4Q5JQC9 854 aa16.27■□□□□ 0.19
PTPN1-202ENST00000541713 LRSAM1Q6UWE0 723 aa16.27■□□□□ 0.19
PTPN1-202ENST00000541713 A0A0D9SFI3 127 aa16.26■□□□□ 0.19
PTPN1-202ENST00000541713 GRM8O00222 908 aa16.26■□□□□ 0.19
PTPN1-202ENST00000541713 ZNF496Q96IT1 587 aaPredicted RBP16.26■□□□□ 0.19
PTPN1-202ENST00000541713 KSR2Q6VAB6 950 aa16.26■□□□□ 0.19
PTPN1-202ENST00000541713 CKAP2LQ8IYA6 745 aa16.26■□□□□ 0.19
PTPN1-202ENST00000541713 TTC12Q9H892 705 aaPredicted RBP16.26■□□□□ 0.19
PTPN1-202ENST00000541713 LIMCH1Q9UPQ0 1083 aa16.26■□□□□ 0.19
PTPN1-202ENST00000541713 HTATSF1O43719 755 aaKnown RBP16.25■□□□□ 0.19
PTPN1-202ENST00000541713 SASH1O94885 1247 aa16.25■□□□□ 0.19
PTPN1-202ENST00000541713 HSP90AB3PQ58FF7 597 aa16.25■□□□□ 0.19
PTPN1-202ENST00000541713 STAP2Q9UGK3 403 aa16.25■□□□□ 0.19
PTPN1-202ENST00000541713 CYP46A1Q9Y6A2 500 aa16.25■□□□□ 0.19
PTPN1-202ENST00000541713 ITSN1Q15811 1721 aa16.25■□□□□ 0.19
PTPN1-202ENST00000541713 ADCY9O60503 1353 aa16.25■□□□□ 0.19
PTPN1-202ENST00000541713 ZKSCAN1P17029 563 aaPredicted RBP16.25■□□□□ 0.19
PTPN1-202ENST00000541713 TTC5Q8N0Z6 440 aa16.25■□□□□ 0.19
PTPN1-202ENST00000541713 GPATCH3Q96I76 525 aa16.25■□□□□ 0.19
PTPN1-202ENST00000541713 WDR33Q9C0J8 1336 aaKnown RBP16.25■□□□□ 0.19
PTPN1-202ENST00000541713 NEXNQ0ZGT2 675 aa16.25■□□□□ 0.19
PTPN1-202ENST00000541713 LARP1BQ659C4 914 aaKnown RBP16.25■□□□□ 0.19
PTPN1-202ENST00000541713 ZNF445P59923 1031 aa16.24■□□□□ 0.19
PTPN1-202ENST00000541713 ZNF589Q86UQ0 364 aaPredicted RBP16.24■□□□□ 0.19
PTPN1-202ENST00000541713 ZBTB3Q9H5J0 574 aa16.24■□□□□ 0.19
PTPN1-202ENST00000541713 AGLP35573 1532 aa16.24■□□□□ 0.19
PTPN1-202ENST00000541713 KAT6BQ8WYB5 2073 aa16.24■□□□□ 0.19
PTPN1-202ENST00000541713 RAD50Q92878 1312 aa16.24■□□□□ 0.19
PTPN1-202ENST00000541713 GUCY1B3Q02153 619 aa16.24■□□□□ 0.19
PTPN1-202ENST00000541713 ME3Q16798 604 aa16.24■□□□□ 0.19
PTPN1-202ENST00000541713 SNRKQ9NRH2 765 aa16.24■□□□□ 0.19
PTPN1-202ENST00000541713 C3P01024 1663 aa16.24■□□□□ 0.19
PTPN1-202ENST00000541713 A0A087WWV3 80 aa16.23■□□□□ 0.19
PTPN1-202ENST00000541713 MCM2P49736 904 aa16.23■□□□□ 0.19
PTPN1-202ENST00000541713 POLA2Q14181 598 aa16.23■□□□□ 0.19
PTPN1-202ENST00000541713 GOLGA6L4A6NEF3 574 aa16.23■□□□□ 0.19
PTPN1-202ENST00000541713 SSH2Q76I76 1423 aa16.23■□□□□ 0.19
PTPN1-202ENST00000541713 ZSCAN22P10073 491 aaPredicted RBP16.22■□□□□ 0.19
PTPN1-202ENST00000541713 TFCP2Q12800 502 aa16.22■□□□□ 0.19
PTPN1-202ENST00000541713 ZNF594Q96JF6 807 aaPredicted RBP16.22■□□□□ 0.19
PTPN1-202ENST00000541713 A0A087WZG4 1122 aa16.22■□□□□ 0.19
PTPN1-202ENST00000541713 DDX58O95786 925 aaKnown RBP16.22■□□□□ 0.19
PTPN1-202ENST00000541713 IGKV5-2P06315 115 aa16.22■□□□□ 0.19
PTPN1-202ENST00000541713 TIMM10P62072 90 aa16.22■□□□□ 0.19
PTPN1-202ENST00000541713 KCNH5Q8NCM2 988 aa16.22■□□□□ 0.19
PTPN1-202ENST00000541713 RUFY2Q8WXA3 655 aa16.22■□□□□ 0.19
PTPN1-202ENST00000541713 STRN4Q9NRL3 753 aa16.22■□□□□ 0.19
PTPN1-202ENST00000541713 MBD3O95983 291 aa16.22■□□□□ 0.19
PTPN1-202ENST00000541713 KAZALD1Q96I82 304 aa16.22■□□□□ 0.19
PTPN1-202ENST00000541713 TPCN1Q9ULQ1 816 aa16.22■□□□□ 0.19
PTPN1-202ENST00000541713 CUL4AQ13619 759 aa16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms