RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 RIC3Q7Z5B4 369 aa15.16■□□□□ 0.02
RNF4-222ENST00000541204 JARID2Q92833 1246 aaPredicted RBP15.16■□□□□ 0.02
RNF4-222ENST00000541204 BRINP3Q76B58 766 aa15.16■□□□□ 0.02
RNF4-222ENST00000541204 IFNL2Q8IZJ0 200 aa15.16■□□□□ 0.02
RNF4-222ENST00000541204 HYPKQ9NX55 129 aa15.16■□□□□ 0.02
RNF4-222ENST00000541204 KDM6AO15550 1401 aaPredicted RBP15.16■□□□□ 0.02
RNF4-222ENST00000541204 SPATA31A3Q5VYP0 1347 aa15.16■□□□□ 0.02
RNF4-222ENST00000541204 MCCP23508 829 aa15.15■□□□□ 0.02
RNF4-222ENST00000541204 TNS3Q68CZ2 1445 aa15.15■□□□□ 0.02
RNF4-222ENST00000541204 PDIA6Q15084 440 aa15.15■□□□□ 0.02
RNF4-222ENST00000541204 LRSAM1Q6UWE0 723 aa15.15■□□□□ 0.02
RNF4-222ENST00000541204 KIAA1211Q6ZU35 1233 aa15.15■□□□□ 0.02
RNF4-222ENST00000541204 TTC5Q8N0Z6 440 aa15.15■□□□□ 0.02
RNF4-222ENST00000541204 USP16Q9Y5T5 823 aa15.15■□□□□ 0.02
RNF4-222ENST00000541204 TUBGCP6Q96RT7 1819 aa15.14■□□□□ 0.01
RNF4-222ENST00000541204 BRD1O95696 1058 aa15.14■□□□□ 0.01
RNF4-222ENST00000541204 MCM2P49736 904 aa15.14■□□□□ 0.01
RNF4-222ENST00000541204 XAGE3Q8WTP9 111 aa15.14■□□□□ 0.01
RNF4-222ENST00000541204 PRDM11Q9NQV5 511 aa15.14■□□□□ 0.01
RNF4-222ENST00000541204 DDX21Q9NR30 783 aaKnown RBP eCLIP15.14■□□□□ 0.01
RNF4-222ENST00000541204 HEG1Q9ULI3 1381 aa15.14■□□□□ 0.01
RNF4-222ENST00000541204 ALS2Q96Q42 1657 aa15.14■□□□□ 0.01
RNF4-222ENST00000541204 COPS6Q7L5N1 327 aa15.14■□□□□ 0.01
RNF4-222ENST00000541204 KIF1BPQ96EK5 621 aa15.14■□□□□ 0.01
RNF4-222ENST00000541204 PDLIM2Q96JY6 352 aa15.14■□□□□ 0.01
RNF4-222ENST00000541204 UPF3BQ9BZI7 483 aaKnown RBP15.14■□□□□ 0.01
RNF4-222ENST00000541204 IL25Q9H293 177 aa15.14■□□□□ 0.01
RNF4-222ENST00000541204 CACNA1FO60840 1977 aa15.14■□□□□ 0.01
RNF4-222ENST00000541204 RAB11FIP3O75154 756 aa15.13■□□□□ 0.01
RNF4-222ENST00000541204 CUL4AQ13619 759 aa15.13■□□□□ 0.01
RNF4-222ENST00000541204 RRP9O43818 475 aaKnown RBP15.13■□□□□ 0.01
RNF4-222ENST00000541204 DDX58O95786 925 aaKnown RBP15.13■□□□□ 0.01
RNF4-222ENST00000541204 FOXD4L6Q3SYB3 417 aaPredicted RBP15.13■□□□□ 0.01
RNF4-222ENST00000541204 FOXD4L3Q6VB84 417 aaPredicted RBP15.13■□□□□ 0.01
RNF4-222ENST00000541204 TOM1L2Q6ZVM7 507 aa15.13■□□□□ 0.01
RNF4-222ENST00000541204 SUCLG2Q96I99 432 aa15.13■□□□□ 0.01
RNF4-222ENST00000541204 STAP2Q9UGK3 403 aa15.13■□□□□ 0.01
RNF4-222ENST00000541204 ZNF335Q9H4Z2 1342 aaPredicted RBP15.13■□□□□ 0.01
RNF4-222ENST00000541204 CABP4P57796 275 aa15.13■□□□□ 0.01
RNF4-222ENST00000541204 SIL1Q9H173 461 aa15.13■□□□□ 0.01
RNF4-222ENST00000541204 ANAPC15P60006 121 aa15.12■□□□□ 0.01
RNF4-222ENST00000541204 GRM8O00222 908 aa15.12■□□□□ 0.01
RNF4-222ENST00000541204 OFD1O75665 1012 aa15.12■□□□□ 0.01
RNF4-222ENST00000541204 TPM2P07951 284 aa15.12■□□□□ 0.01
RNF4-222ENST00000541204 LINS1Q8NG48 757 aa15.12■□□□□ 0.01
RNF4-222ENST00000541204 KLHDC4Q8TBB5 520 aa15.12■□□□□ 0.01
RNF4-222ENST00000541204 MYD88Q99836 296 aa15.12■□□□□ 0.01
RNF4-222ENST00000541204 BICC1Q9H694 974 aaKnown RBP15.12■□□□□ 0.01
RNF4-222ENST00000541204 STRN4Q9NRL3 753 aa15.12■□□□□ 0.01
RNF4-222ENST00000541204 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.12■□□□□ 0.01
RNF4-222ENST00000541204 ALDH1L1O75891 902 aa15.11■□□□□ 0.01
RNF4-222ENST00000541204 MBD3O95983 291 aa15.11■□□□□ 0.01
RNF4-222ENST00000541204 HS1BP3Q53T59 392 aa15.11■□□□□ 0.01
RNF4-222ENST00000541204 RNF214Q8ND24 703 aa15.11■□□□□ 0.01
RNF4-222ENST00000541204 DCAF5Q96JK2 942 aa15.11■□□□□ 0.01
RNF4-222ENST00000541204 NOL7Q9UMY1 257 aaKnown RBP15.11■□□□□ 0.01
RNF4-222ENST00000541204 OVOS2A0A0G2JMS6 1433 aa15.11■□□□□ 0.01
RNF4-222ENST00000541204 DCCP43146 1447 aa15.11■□□□□ 0.01
RNF4-222ENST00000541204 IGKV5-2P06315 115 aa15.11■□□□□ 0.01
RNF4-222ENST00000541204 PI4K2BQ8TCG2 481 aa15.11■□□□□ 0.01
RNF4-222ENST00000541204 INTS4Q96HW7 963 aaKnown RBP15.11■□□□□ 0.01
RNF4-222ENST00000541204 DDX54Q8TDD1 881 aaKnown RBP15.1■□□□□ 0.01
RNF4-222ENST00000541204 KAZALD1Q96I82 304 aa15.1■□□□□ 0.01
RNF4-222ENST00000541204 SLAIN2Q9P270 581 aa15.1■□□□□ 0.01
RNF4-222ENST00000541204 GDPD2Q9HCC8 539 aa15.1■□□□□ 0.01
RNF4-222ENST00000541204 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.1■□□□□ 0.01
RNF4-222ENST00000541204 ATP5J2-PTCD1G3V325 749 aa15.09■□□□□ 0.01
RNF4-222ENST00000541204 PTCD1O75127 700 aaKnown RBP15.09■□□□□ 0.01
RNF4-222ENST00000541204 SNRPA1P09661 255 aaKnown RBP15.09■□□□□ 0.01
RNF4-222ENST00000541204 NEXNQ0ZGT2 675 aa15.09■□□□□ 0.01
RNF4-222ENST00000541204 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.09■□□□□ 0.01
RNF4-222ENST00000541204 CLASRPQ8N2M8 674 aaKnown RBP15.09■□□□□ 0.01
RNF4-222ENST00000541204 HSP90AB4PQ58FF6 505 aa15.08■□□□□ 0.01
RNF4-222ENST00000541204 CWC27Q6UX04 472 aaKnown RBP15.08■□□□□ 0.01
RNF4-222ENST00000541204 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.08■□□□□ 0.015e-8■□□□□ 9.7
RNF4-222ENST00000541204 CAMTA1Q9Y6Y1 1673 aa15.08■□□□□ 0
RNF4-222ENST00000541204 LARP1Q6PKG0 1096 aaKnown RBP15.08■□□□□ 0
RNF4-222ENST00000541204 AACSQ86V21 672 aa15.08■□□□□ 0
RNF4-222ENST00000541204 FMNL2Q96PY5 1086 aa15.08■□□□□ 0
RNF4-222ENST00000541204 IFIT2P09913 472 aaKnown RBP15.07■□□□□ 0
RNF4-222ENST00000541204 ANKRD13DQ6ZTN6 518 aa15.07■□□□□ 0
RNF4-222ENST00000541204 CCDC8Q9H0W5 538 aaPredicted RBP15.07■□□□□ 0
RNF4-222ENST00000541204 NEURL1BA8MQ27 555 aa15.07■□□□□ 0
RNF4-222ENST00000541204 GADD45BO75293 160 aaPredicted RBP15.07■□□□□ 0
RNF4-222ENST00000541204 EPHA10Q5JZY3 1008 aa15.07■□□□□ 0
RNF4-222ENST00000541204 ZNF500O60304 480 aaPredicted RBP15.07■□□□□ 0
RNF4-222ENST00000541204 HSPA4P34932 840 aa15.07■□□□□ 0
RNF4-222ENST00000541204 MTX1Q13505 466 aa15.07■□□□□ 0
RNF4-222ENST00000541204 ZKSCAN5Q9Y2L8 839 aa15.07■□□□□ 0
RNF4-222ENST00000541204 R3HCC1Q9Y3T6 440 aaKnown RBP15.07■□□□□ 0
RNF4-222ENST00000541204 GCKRQ14397 625 aa15.06■□□□□ 0
RNF4-222ENST00000541204 CNTROBQ8N137 903 aa15.06■□□□□ 0
RNF4-222ENST00000541204 ZCRB1Q8TBF4 217 aaKnown RBP15.06■□□□□ 0
RNF4-222ENST00000541204 IL17RAQ96F46 866 aa15.06■□□□□ 0
RNF4-222ENST00000541204 G3BP1Q13283 466 aaKnown RBP eCLIP15.06■□□□□ 0
RNF4-222ENST00000541204 GLIPR1L2Q4G1C9 344 aa15.06■□□□□ 0
RNF4-222ENST00000541204 AOX1Q06278 1338 aa15.05■□□□□ 0
RNF4-222ENST00000541204 N4BP2Q86UW6 1770 aaPredicted RBP15.05■□□□□ 0
RNF4-222ENST00000541204 UBE3BQ7Z3V4 1068 aa15.05■□□□□ 0
RNF4-222ENST00000541204 USP48Q86UV5 1035 aa15.05■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms