RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 C1orf115Q9H7X2 142 aa22.25■■□□□ 1.15
CLIP1-215ENST00000541108 TTLL7Q6ZT98 887 aa22.24■■□□□ 1.15
CLIP1-215ENST00000541108 ZBTB1Q9Y2K1 713 aa22.24■■□□□ 1.15
CLIP1-215ENST00000541108 UBTFL1P0CB47 393 aaPredicted RBP22.23■■□□□ 1.15
CLIP1-215ENST00000541108 ANKRD44Q8N8A2 993 aa22.23■■□□□ 1.15
CLIP1-215ENST00000541108 CCDC87Q9NVE4 849 aa22.23■■□□□ 1.15
CLIP1-215ENST00000541108 ARFGEF2Q9Y6D5 1785 aa22.23■■□□□ 1.15
CLIP1-215ENST00000541108 IGKV5-2P06315 115 aa22.23■■□□□ 1.15
CLIP1-215ENST00000541108 CRKLP46109 303 aaKnown RBP22.23■■□□□ 1.15
CLIP1-215ENST00000541108 INTS5Q6P9B9 1019 aaKnown RBP22.23■■□□□ 1.15
CLIP1-215ENST00000541108 NPM2Q86SE8 214 aaKnown RBP22.23■■□□□ 1.15
CLIP1-215ENST00000541108 RREB1Q92766 1687 aa22.22■■□□□ 1.15
CLIP1-215ENST00000541108 NEURL1BA8MQ27 555 aa22.22■■□□□ 1.15
CLIP1-215ENST00000541108 CWF19L2Q2TBE0 894 aaKnown RBP22.22■■□□□ 1.15
CLIP1-215ENST00000541108 SIRT2Q8IXJ6 389 aa22.22■■□□□ 1.15
CLIP1-215ENST00000541108 MYD88Q99836 296 aa22.22■■□□□ 1.15
CLIP1-215ENST00000541108 UTYO14607 1347 aa22.22■■□□□ 1.15
CLIP1-215ENST00000541108 COL5A3P25940 1745 aaPredicted RBP22.21■■□□□ 1.15
CLIP1-215ENST00000541108 EIF5P55010 431 aaKnown RBP22.21■■□□□ 1.15
CLIP1-215ENST00000541108 CEP85Q6P2H3 762 aa22.21■■□□□ 1.15
CLIP1-215ENST00000541108 KIF6Q6ZMV9 814 aa22.21■■□□□ 1.15
CLIP1-215ENST00000541108 SMC5Q8IY18 1101 aa22.21■■□□□ 1.15
CLIP1-215ENST00000541108 C9orf78Q9NZ63 289 aaPredicted RBP22.21■■□□□ 1.15
CLIP1-215ENST00000541108 LY75O60449 1722 aa22.21■■□□□ 1.15
CLIP1-215ENST00000541108 NBPF7P0C2Y1 421 aaPredicted RBP22.2■■□□□ 1.15
CLIP1-215ENST00000541108 NUP188Q5SRE5 1749 aa22.2■■□□□ 1.14
CLIP1-215ENST00000541108 GRM8O00222 908 aa22.2■■□□□ 1.14
CLIP1-215ENST00000541108 GCKRQ14397 625 aa22.2■■□□□ 1.14
CLIP1-215ENST00000541108 MAP3K15Q6ZN16 1313 aa22.19■■□□□ 1.14
CLIP1-215ENST00000541108 HMMRO75330 724 aa22.19■■□□□ 1.14
CLIP1-215ENST00000541108 RC3H1Q5TC82 1133 aaKnown RBP22.19■■□□□ 1.14
CLIP1-215ENST00000541108 POTEAQ6S8J7 498 aa22.19■■□□□ 1.14
CLIP1-215ENST00000541108 GCC1Q96CN9 775 aa22.19■■□□□ 1.14
CLIP1-215ENST00000541108 ZNF330Q9Y3S2 320 aaPredicted RBP22.19■■□□□ 1.14
CLIP1-215ENST00000541108 ERVV-1B6SEH8 477 aa22.18■■□□□ 1.14
CLIP1-215ENST00000541108 ZBTB3Q9H5J0 574 aa22.18■■□□□ 1.14
CLIP1-215ENST00000541108 CNTNAP4Q9C0A0 1308 aa22.18■■□□□ 1.14
CLIP1-215ENST00000541108 MYH14Q7Z406 1995 aaKnown RBP22.18■■□□□ 1.14
CLIP1-215ENST00000541108 HMGB2P26583 209 aaKnown RBP22.17■■□□□ 1.14
CLIP1-215ENST00000541108 CCNL1Q9UK58 526 aaPredicted RBP22.17■■□□□ 1.14
CLIP1-215ENST00000541108 LRRFIP2Q9Y608 721 aaKnown RBP22.17■■□□□ 1.14
CLIP1-215ENST00000541108 ATP8B2P98198 1209 aa22.17■■□□□ 1.14
CLIP1-215ENST00000541108 TRIM28Q13263 835 aaKnown RBP22.17■■□□□ 1.14
CLIP1-215ENST00000541108 TCIRG1Q13488 830 aa22.17■■□□□ 1.14
CLIP1-215ENST00000541108 GIGYF2Q6Y7W6 1299 aaKnown RBP22.17■■□□□ 1.14
CLIP1-215ENST00000541108 CCDC191Q8NCU4 936 aa22.17■■□□□ 1.14
CLIP1-215ENST00000541108 LINC00116Q8NCU8 138 aa22.17■■□□□ 1.14
CLIP1-215ENST00000541108 TRIM37O94972 964 aa22.16■■□□□ 1.14
CLIP1-215ENST00000541108 HSP90AB3PQ58FF7 597 aa22.16■■□□□ 1.14
CLIP1-215ENST00000541108 DZIP3Q86Y13 1208 aaKnown RBP22.15■■□□□ 1.14
CLIP1-215ENST00000541108 DCTPP1Q9H773 170 aa22.15■■□□□ 1.14
CLIP1-215ENST00000541108 ATP5J2-PTCD1G3V325 749 aa22.14■■□□□ 1.14
CLIP1-215ENST00000541108 ISCA1Q9BUE6 129 aa22.14■■□□□ 1.14
CLIP1-215ENST00000541108 SLC27A3Q5K4L6 730 aa22.14■■□□□ 1.13
CLIP1-215ENST00000541108 CWC25Q9NXE8 425 aaPredicted RBP22.14■■□□□ 1.13
CLIP1-215ENST00000541108 AFDNP55196 1824 aaKnown RBP22.13■■□□□ 1.13
CLIP1-215ENST00000541108 A0A087WZG4 1122 aa22.13■■□□□ 1.13
CLIP1-215ENST00000541108 COL15A1P39059 1388 aa22.13■■□□□ 1.13
CLIP1-215ENST00000541108 MTX1Q13505 466 aa22.13■■□□□ 1.13
CLIP1-215ENST00000541108 ARXQ96QS3 562 aa22.13■■□□□ 1.13
CLIP1-215ENST00000541108 RGL2O15211 777 aa22.11■■□□□ 1.13
CLIP1-215ENST00000541108 PDZRN3Q9UPQ7 1066 aa22.11■■□□□ 1.13
CLIP1-215ENST00000541108 TBC1D2BQ9UPU7 963 aa22.11■■□□□ 1.13
CLIP1-215ENST00000541108 TAF1LQ8IZX4 1826 aa22.11■■□□□ 1.13
CLIP1-215ENST00000541108 EP400Q96L91 3159 aa22.11■■□□□ 1.13
CLIP1-215ENST00000541108 H7C1W4 665 aa22.11■■□□□ 1.13
CLIP1-215ENST00000541108 RPS6KA4O75676 772 aa22.11■■□□□ 1.13
CLIP1-215ENST00000541108 KCNQ4P56696 695 aa22.11■■□□□ 1.13
CLIP1-215ENST00000541108 SSH3Q8TE77 659 aa22.11■■□□□ 1.13
CLIP1-215ENST00000541108 PLSCR1O15162 318 aa22.1■■□□□ 1.13
CLIP1-215ENST00000541108 NUCB1Q02818 461 aa22.1■■□□□ 1.13
CLIP1-215ENST00000541108 HLFQ16534 295 aa22.1■■□□□ 1.13
CLIP1-215ENST00000541108 NUP98P52948 1817 aa22.09■■□□□ 1.13
CLIP1-215ENST00000541108 PNMA6EA0A0J9YXQ4 647 aa22.09■■□□□ 1.13
CLIP1-215ENST00000541108 POLA2Q14181 598 aa22.09■■□□□ 1.13
CLIP1-215ENST00000541108 CASP7P55210 303 aa22.08■■□□□ 1.13
CLIP1-215ENST00000541108 PPP1R42Q7Z4L9 355 aa22.08■■□□□ 1.13
CLIP1-215ENST00000541108 KAZALD1Q96I82 304 aa22.08■■□□□ 1.13
CLIP1-215ENST00000541108 SUCLG2Q96I99 432 aa22.08■■□□□ 1.13
CLIP1-215ENST00000541108 CAMTA2O94983 1202 aa22.07■■□□□ 1.12
CLIP1-215ENST00000541108 CLEC4GQ6UXB4 293 aa22.07■■□□□ 1.12
CLIP1-215ENST00000541108 UBE3BQ7Z3V4 1068 aa22.07■■□□□ 1.12
CLIP1-215ENST00000541108 ANKRD36CQ5JPF3 1778 aa22.07■■□□□ 1.12
CLIP1-215ENST00000541108 SRGAP3O43295 1099 aa22.07■■□□□ 1.12
CLIP1-215ENST00000541108 LRRC4BQ9NT99 713 aa22.07■■□□□ 1.12
CLIP1-215ENST00000541108 RTCBQ9Y3I0 505 aaKnown RBP22.07■■□□□ 1.12
CLIP1-215ENST00000541108 CHD1LQ86WJ1 897 aa22.06■■□□□ 1.12
CLIP1-215ENST00000541108 ZNF34Q8IZ26 560 aa22.06■■□□□ 1.12
CLIP1-215ENST00000541108 ZNF652Q9Y2D9 606 aa22.06■■□□□ 1.12
CLIP1-215ENST00000541108 C4BP0C0L5 1744 aa22.05■■□□□ 1.12
CLIP1-215ENST00000541108 ANKRD45Q5TZF3 282 aa22.05■■□□□ 1.12
CLIP1-215ENST00000541108 NLRP10Q86W26 655 aa22.05■■□□□ 1.12
CLIP1-215ENST00000541108 BICC1Q9H694 974 aaKnown RBP22.05■■□□□ 1.12
CLIP1-215ENST00000541108 GNPATO15228 680 aa22.04■■□□□ 1.12
CLIP1-215ENST00000541108 PCCAP05165 728 aaPredicted RBP22.04■■□□□ 1.12
CLIP1-215ENST00000541108 RABL6Q3YEC7 729 aaPredicted RBP22.04■■□□□ 1.12
CLIP1-215ENST00000541108 ZBTB38Q8NAP3 1195 aaPredicted RBP22.04■■□□□ 1.12
CLIP1-215ENST00000541108 TXNRD1Q16881 649 aa22.04■■□□□ 1.12
CLIP1-215ENST00000541108 APBA3O96018 575 aa22.03■■□□□ 1.12
CLIP1-215ENST00000541108 NARFQ9UHQ1 456 aa22.03■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms