RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 CCDC192P0DO97 292 aa16.54■□□□□ 0.24
USP3-204ENST00000540797 KRI1Q8N9T8 703 aaKnown RBP16.54■□□□□ 0.24
USP3-204ENST00000540797 POLR3AO14802 1390 aaPredicted RBP16.54■□□□□ 0.24
USP3-204ENST00000540797 MAP3K5Q99683 1374 aa16.54■□□□□ 0.24
USP3-204ENST00000540797 TNIP1Q15025 636 aa16.54■□□□□ 0.24
USP3-204ENST00000540797 GRM8O00222 908 aa16.53■□□□□ 0.24
USP3-204ENST00000540797 SERPINC1P01008 464 aa16.53■□□□□ 0.24
USP3-204ENST00000540797 ABCA5Q8WWZ7 1642 aa16.53■□□□□ 0.24
USP3-204ENST00000540797 TTLL5Q6EMB2 1281 aa16.53■□□□□ 0.24
USP3-204ENST00000540797 TANGO6Q9C0B7 1094 aa16.53■□□□□ 0.24
USP3-204ENST00000540797 NYXQ9GZU5 481 aa16.53■□□□□ 0.24
USP3-204ENST00000540797 LMBR1LQ6UX01 489 aa16.53■□□□□ 0.24
USP3-204ENST00000540797 CCDC82Q8N4S0 544 aa16.53■□□□□ 0.24
USP3-204ENST00000540797 MEIS3Q99687 375 aa16.53■□□□□ 0.24
USP3-204ENST00000540797 CARD14Q9BXL6 1004 aa16.53■□□□□ 0.24
USP3-204ENST00000540797 ZFYVE9O95405 1425 aa16.53■□□□□ 0.24
USP3-204ENST00000540797 WDR78Q5VTH9 848 aa16.53■□□□□ 0.24
USP3-204ENST00000540797 CEP57L1Q8IYX8 460 aa16.52■□□□□ 0.24
USP3-204ENST00000540797 MNS1Q8NEH6 495 aa16.52■□□□□ 0.24
USP3-204ENST00000540797 PDCL3Q9H2J4 239 aa16.52■□□□□ 0.24
USP3-204ENST00000540797 NEO1Q92859 1461 aa16.52■□□□□ 0.24
USP3-204ENST00000540797 RHPN1Q8TCX5 695 aa16.52■□□□□ 0.24
USP3-204ENST00000540797 CCDC39Q9UFE4 941 aa16.52■□□□□ 0.24
USP3-204ENST00000540797 MYO1BO43795 1136 aa16.52■□□□□ 0.24
USP3-204ENST00000540797 HLA-DOAP06340 250 aa16.52■□□□□ 0.24
USP3-204ENST00000540797 GSTO1P78417 241 aa16.52■□□□□ 0.24
USP3-204ENST00000540797 NBPF14Q5TI25 921 aa16.52■□□□□ 0.24
USP3-204ENST00000540797 TPTE2Q6XPS3 522 aa16.52■□□□□ 0.24
USP3-204ENST00000540797 FEZ1Q99689 392 aa16.52■□□□□ 0.24
USP3-204ENST00000540797 UTP3Q9NQZ2 479 aaKnown RBP eCLIP16.52■□□□□ 0.242e-22■■■■■ 279.5
USP3-204ENST00000540797 CDCA7Q9BWT1 371 aaPredicted RBP16.52■□□□□ 0.23
USP3-204ENST00000540797 DNMT1P26358 1616 aaKnown RBP16.52■□□□□ 0.23
USP3-204ENST00000540797 MAST1Q9Y2H9 1570 aa16.52■□□□□ 0.23
USP3-204ENST00000540797 CATIPQ7Z7H3 387 aa16.52■□□□□ 0.23
USP3-204ENST00000540797 CCDC173Q0VFZ6 552 aa16.51■□□□□ 0.23
USP3-204ENST00000540797 ATP2B3Q16720 1220 aa16.51■□□□□ 0.23
USP3-204ENST00000540797 CABP5Q9NP86 173 aa16.51■□□□□ 0.23
USP3-204ENST00000540797 SH2B1Q9NRF2 756 aaPredicted RBP16.51■□□□□ 0.23
USP3-204ENST00000540797 CIZ1Q9ULV3 898 aaPredicted RBP16.51■□□□□ 0.23
USP3-204ENST00000540797 RNMTO43148 476 aaKnown RBP16.51■□□□□ 0.23
USP3-204ENST00000540797 PDE4BQ07343 736 aa16.51■□□□□ 0.23
USP3-204ENST00000540797 ZNHIT6Q9NWK9 470 aaKnown RBP16.51■□□□□ 0.23
USP3-204ENST00000540797 FERMT3Q86UX7 667 aa16.51■□□□□ 0.23
USP3-204ENST00000540797 CUL5Q93034 780 aa16.51■□□□□ 0.23
USP3-204ENST00000540797 GOLGA8AA7E2F4 631 aa16.51■□□□□ 0.23
USP3-204ENST00000540797 GOLGA8BA8MQT2 603 aa16.51■□□□□ 0.23
USP3-204ENST00000540797 PARP3Q9Y6F1 533 aa16.51■□□□□ 0.23
USP3-204ENST00000540797 MRPL50Q8N5N7 158 aaKnown RBP16.5■□□□□ 0.23
USP3-204ENST00000540797 C8orf76Q96K31 380 aa16.5■□□□□ 0.23
USP3-204ENST00000540797 CRNKL1Q9BZJ0 848 aaKnown RBP16.5■□□□□ 0.23
USP3-204ENST00000540797 POLD1P28340 1107 aa16.5■□□□□ 0.23
USP3-204ENST00000540797 TSHZ3Q63HK5 1081 aa16.5■□□□□ 0.23
USP3-204ENST00000540797 TSPY2A6NKD2 308 aa16.49■□□□□ 0.23
USP3-204ENST00000540797 PARD3Q8TEW0 1356 aa16.49■□□□□ 0.23
USP3-204ENST00000540797 MATR3P43243 847 aaKnown RBP eCLIP16.49■□□□□ 0.236e-9■■□□□ 14.1
USP3-204ENST00000540797 CAGE1Q8TC20 777 aa16.49■□□□□ 0.23
USP3-204ENST00000540797 ZFYVE16Q7Z3T8 1539 aa16.49■□□□□ 0.23
USP3-204ENST00000540797 ARHGEF12Q9NZN5 1544 aa16.49■□□□□ 0.23
USP3-204ENST00000540797 SSRP1Q08945 709 aaKnown RBP16.49■□□□□ 0.23
USP3-204ENST00000540797 LINS1Q8NG48 757 aa16.49■□□□□ 0.23
USP3-204ENST00000540797 SLAIN2Q9P270 581 aa16.49■□□□□ 0.23
USP3-204ENST00000540797 IQSEC3Q9UPP2 1182 aaPredicted RBP16.49■□□□□ 0.23
USP3-204ENST00000540797 IL15P40933 162 aaPredicted RBP16.49■□□□□ 0.23
USP3-204ENST00000540797 PHACTR3Q96KR7 559 aa16.49■□□□□ 0.23
USP3-204ENST00000540797 MFSD6Q6ZSS7 791 aa16.48■□□□□ 0.23
USP3-204ENST00000540797 SKAP1Q86WV1 359 aa16.48■□□□□ 0.23
USP3-204ENST00000540797 PZPP20742 1482 aa16.48■□□□□ 0.23
USP3-204ENST00000540797 HAND2P61296 217 aa16.48■□□□□ 0.23
USP3-204ENST00000540797 SLC4A8Q2Y0W8 1093 aa16.48■□□□□ 0.23
USP3-204ENST00000540797 PPFIBP1Q86W92 1011 aa16.48■□□□□ 0.23
USP3-204ENST00000540797 ZGPATQ8N5A5 531 aaKnown RBP16.48■□□□□ 0.23
USP3-204ENST00000540797 TMEM2Q9UHN6 1383 aa16.48■□□□□ 0.23
USP3-204ENST00000540797 HDAC9Q9UKV0 1011 aa16.48■□□□□ 0.23
USP3-204ENST00000540797 NUP62CLQ9H1M0 184 aa16.48■□□□□ 0.23
USP3-204ENST00000540797 TMEM67Q5HYA8 995 aa16.47■□□□□ 0.23
USP3-204ENST00000540797 LIMCH1Q9UPQ0 1083 aa16.47■□□□□ 0.23
USP3-204ENST00000540797 NLRP5P59047 1200 aa16.47■□□□□ 0.23
USP3-204ENST00000540797 HMGN5P82970 282 aaKnown RBP16.47■□□□□ 0.23
USP3-204ENST00000540797 GNPATO15228 680 aa16.47■□□□□ 0.23
USP3-204ENST00000540797 CYP7A1P22680 504 aa16.47■□□□□ 0.23
USP3-204ENST00000540797 CHMP4BP1P59074 171 aa16.47■□□□□ 0.23
USP3-204ENST00000540797 KAT14Q9H8E8 782 aa16.46■□□□□ 0.23
USP3-204ENST00000540797 PLEKHH1Q9ULM0 1364 aa16.46■□□□□ 0.23
USP3-204ENST00000540797 CCDC194A0A1B0GVG4 234 aa16.46■□□□□ 0.23
USP3-204ENST00000540797 F8W031 263 aaPredicted RBP16.46■□□□□ 0.23
USP3-204ENST00000540797 IRS4O14654 1257 aaPredicted RBP16.46■□□□□ 0.23
USP3-204ENST00000540797 CCT2P78371 535 aaKnown RBP16.46■□□□□ 0.23
USP3-204ENST00000540797 PAF1Q8N7H5 531 aa16.46■□□□□ 0.23
USP3-204ENST00000540797 ADGRL2O95490 1459 aa16.46■□□□□ 0.23
USP3-204ENST00000540797 KIF5BP33176 963 aa16.46■□□□□ 0.23
USP3-204ENST00000540797 RDXP35241 583 aaKnown RBP16.46■□□□□ 0.23
USP3-204ENST00000540797 ATP8B2P98198 1209 aa16.46■□□□□ 0.23
USP3-204ENST00000540797 GUCY1B3Q02153 619 aa16.46■□□□□ 0.23
USP3-204ENST00000540797 BMP2KLQ5H9B9 411 aa16.46■□□□□ 0.23
USP3-204ENST00000540797 TTC22Q5TAA0 569 aa16.46■□□□□ 0.23
USP3-204ENST00000540797 ZNF804AQ7Z570 1209 aa16.46■□□□□ 0.23
USP3-204ENST00000540797 OGFOD1Q8N543 542 aa16.46■□□□□ 0.23
USP3-204ENST00000540797 TRAPPC3LQ5T215 181 aa16.46■□□□□ 0.23
USP3-204ENST00000540797 EHMT1Q9H9B1 1298 aa16.46■□□□□ 0.23
USP3-204ENST00000540797 EDC4Q6P2E9 1401 aaKnown RBP16.46■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms