RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 LARGE1O95461 756 aa20.51■□□□□ 0.87
USP28-208ENST00000540438 A0A0G2JS52 829 aa20.51■□□□□ 0.87
USP28-208ENST00000540438 CYP27B1O15528 508 aa20.51■□□□□ 0.87
USP28-208ENST00000540438 SASH1O94885 1247 aa20.51■□□□□ 0.87
USP28-208ENST00000540438 CASTP20810 708 aaKnown RBP20.51■□□□□ 0.87
USP28-208ENST00000540438 STAP2Q9UGK3 403 aa20.51■□□□□ 0.87
USP28-208ENST00000540438 GRM8O00222 908 aa20.5■□□□□ 0.87
USP28-208ENST00000540438 KIAA1211Q6ZU35 1233 aa20.5■□□□□ 0.87
USP28-208ENST00000540438 NFAT5O94916 1531 aa20.5■□□□□ 0.87
USP28-208ENST00000540438 TATP17735 454 aaPredicted RBP20.5■□□□□ 0.87
USP28-208ENST00000540438 MRE11P49959 708 aa20.5■□□□□ 0.87
USP28-208ENST00000540438 NUCB2P80303 420 aa20.49■□□□□ 0.87
USP28-208ENST00000540438 NECAB1Q8N987 351 aa20.49■□□□□ 0.87
USP28-208ENST00000540438 TAOK2Q9UL54 1235 aa20.49■□□□□ 0.87
USP28-208ENST00000540438 SNX14Q9Y5W7 946 aa20.49■□□□□ 0.87
USP28-208ENST00000540438 TMEM94Q12767 1356 aa20.49■□□□□ 0.87
USP28-208ENST00000540438 SYCE3A1L190 88 aa20.49■□□□□ 0.87
USP28-208ENST00000540438 CNTROBQ8N137 903 aa20.49■□□□□ 0.87
USP28-208ENST00000540438 GADD45BO75293 160 aaPredicted RBP20.48■□□□□ 0.87
USP28-208ENST00000540438 G3BP1Q13283 466 aaKnown RBP eCLIP20.48■□□□□ 0.87
USP28-208ENST00000540438 TTC5Q8N0Z6 440 aa20.48■□□□□ 0.87
USP28-208ENST00000540438 ERBB4Q15303 1308 aa20.48■□□□□ 0.87
USP28-208ENST00000540438 SGSM2O43147 1006 aa20.48■□□□□ 0.87
USP28-208ENST00000540438 AK2P54819 239 aa20.48■□□□□ 0.87
USP28-208ENST00000540438 PRIM1P49642 420 aaKnown RBP20.47■□□□□ 0.87
USP28-208ENST00000540438 JAKMIP1Q96N16 626 aaKnown RBP20.47■□□□□ 0.87
USP28-208ENST00000540438 NPHP3Q7Z494 1330 aa20.47■□□□□ 0.87
USP28-208ENST00000540438 PHKG2P15735 406 aa20.47■□□□□ 0.87
USP28-208ENST00000540438 SLC52A2Q9HAB3 445 aa20.47■□□□□ 0.87
USP28-208ENST00000540438 FAM208AQ9UK61 1670 aaKnown RBP20.47■□□□□ 0.87
USP28-208ENST00000540438 ZSCAN23Q3MJ62 389 aa20.46■□□□□ 0.87
USP28-208ENST00000540438 RAB11FIP3O75154 756 aa20.46■□□□□ 0.87
USP28-208ENST00000540438 CYP2E1P05181 493 aaPredicted RBP20.46■□□□□ 0.87
USP28-208ENST00000540438 CCDC83Q8IWF9 413 aa20.46■□□□□ 0.87
USP28-208ENST00000540438 DNAJC2Q99543 621 aaKnown RBP20.46■□□□□ 0.87
USP28-208ENST00000540438 ZBTB3Q9H5J0 574 aa20.46■□□□□ 0.87
USP28-208ENST00000540438 TMEM63CQ9P1W3 806 aa20.46■□□□□ 0.87
USP28-208ENST00000540438 STK3Q13188 491 aa20.45■□□□□ 0.87
USP28-208ENST00000540438 DDX21Q9NR30 783 aaKnown RBP eCLIP20.45■□□□□ 0.87
USP28-208ENST00000540438 A1BGP04217 495 aa20.45■□□□□ 0.86
USP28-208ENST00000540438 CABP4P57796 275 aa20.45■□□□□ 0.86
USP28-208ENST00000540438 CCDC129Q6ZRS4 1044 aa20.45■□□□□ 0.86
USP28-208ENST00000540438 LSG1Q9H089 658 aaKnown RBP20.45■□□□□ 0.86
USP28-208ENST00000540438 ECHDC1Q9NTX5 307 aa20.45■□□□□ 0.86
USP28-208ENST00000540438 TOM1L2Q6ZVM7 507 aa20.44■□□□□ 0.86
USP28-208ENST00000540438 SEC62Q99442 399 aaKnown RBP20.44■□□□□ 0.86
USP28-208ENST00000540438 FSD1Q9BTV5 496 aa20.44■□□□□ 0.86
USP28-208ENST00000540438 HSPA4P34932 840 aa20.44■□□□□ 0.86
USP28-208ENST00000540438 NASPP49321 788 aaPredicted RBP20.44■□□□□ 0.86
USP28-208ENST00000540438 FOSBP53539 338 aa20.44■□□□□ 0.86
USP28-208ENST00000540438 NMIQ13287 307 aaPredicted RBP20.44■□□□□ 0.86
USP28-208ENST00000540438 LINS1Q8NG48 757 aa20.44■□□□□ 0.86
USP28-208ENST00000540438 RBSNQ9H1K0 784 aa20.44■□□□□ 0.86
USP28-208ENST00000540438 HYPKQ9NX55 129 aa20.44■□□□□ 0.86
USP28-208ENST00000540438 GOLGB1Q14789 3259 aaKnown RBP20.44■□□□□ 0.86
USP28-208ENST00000540438 CHD2O14647 1828 aaKnown RBP20.44■□□□□ 0.86
USP28-208ENST00000540438 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.43■□□□□ 0.86
USP28-208ENST00000540438 FAM173BQ6P4H8 233 aa20.43■□□□□ 0.86
USP28-208ENST00000540438 ANKRD13DQ6ZTN6 518 aa20.43■□□□□ 0.86
USP28-208ENST00000540438 C1orf167Q5SNV9 1468 aa20.43■□□□□ 0.86
USP28-208ENST00000540438 A0A0D9SFI3 127 aa20.43■□□□□ 0.86
USP28-208ENST00000540438 NEXNQ0ZGT2 675 aa20.43■□□□□ 0.86
USP28-208ENST00000540438 KLHL40Q2TBA0 621 aa20.43■□□□□ 0.86
USP28-208ENST00000540438 RUFY3Q7L099 469 aa20.43■□□□□ 0.86
USP28-208ENST00000540438 BABAM1Q9NWV8 329 aa20.43■□□□□ 0.86
USP28-208ENST00000540438 A0A087WZG4 1122 aa20.43■□□□□ 0.86
USP28-208ENST00000540438 NEURL1BA8MQ27 555 aa20.43■□□□□ 0.86
USP28-208ENST00000540438 TTLL7Q6ZT98 887 aa20.43■□□□□ 0.86
USP28-208ENST00000540438 FERMT3Q86UX7 667 aa20.43■□□□□ 0.86
USP28-208ENST00000540438 TRIM44Q96DX7 344 aaPredicted RBP20.43■□□□□ 0.86
USP28-208ENST00000540438 DDX58O95786 925 aaKnown RBP20.42■□□□□ 0.86
USP28-208ENST00000540438 FAM43AQ8N2R8 423 aa20.42■□□□□ 0.86
USP28-208ENST00000540438 ZNF594Q96JF6 807 aaPredicted RBP20.42■□□□□ 0.86
USP28-208ENST00000540438 RGPD5Q99666 1765 aa20.42■□□□□ 0.86
USP28-208ENST00000540438 PRDM11Q9NQV5 511 aa20.42■□□□□ 0.86
USP28-208ENST00000540438 GLRX3O76003 335 aaKnown RBP20.42■□□□□ 0.86
USP28-208ENST00000540438 TFCP2Q12800 502 aa20.42■□□□□ 0.86
USP28-208ENST00000540438 NEUROD6Q96NK8 337 aa20.42■□□□□ 0.86
USP28-208ENST00000540438 LRRC2Q9BYS8 371 aa20.42■□□□□ 0.86
USP28-208ENST00000540438 SKOR2Q2VWA4 1001 aaPredicted RBP20.41■□□□□ 0.86
USP28-208ENST00000540438 FIBPO43427 364 aa20.41■□□□□ 0.86
USP28-208ENST00000540438 GCKRQ14397 625 aa20.41■□□□□ 0.86
USP28-208ENST00000540438 ZNF589Q86UQ0 364 aaPredicted RBP20.41■□□□□ 0.86
USP28-208ENST00000540438 IFNL2Q8IZJ0 200 aa20.41■□□□□ 0.86
USP28-208ENST00000540438 CNPY2Q9Y2B0 182 aa20.41■□□□□ 0.86
USP28-208ENST00000540438 MEGF6O75095 1541 aa20.41■□□□□ 0.86
USP28-208ENST00000540438 DDX46Q7L014 1031 aaKnown RBP20.4■□□□□ 0.86
USP28-208ENST00000540438 CWC22Q9HCG8 908 aaKnown RBP20.4■□□□□ 0.86
USP28-208ENST00000540438 KDM6AO15550 1401 aaPredicted RBP20.4■□□□□ 0.86
USP28-208ENST00000540438 RAD50Q92878 1312 aa20.4■□□□□ 0.86
USP28-208ENST00000540438 VPS37CA5D8V6 355 aaPredicted RBP20.39■□□□□ 0.85
USP28-208ENST00000540438 NAP1L5Q96NT1 182 aaPredicted RBP20.39■□□□□ 0.85
USP28-208ENST00000540438 LRRC37A3O60309 1634 aa20.38■□□□□ 0.85
USP28-208ENST00000540438 HOXB7P09629 217 aa20.38■□□□□ 0.85
USP28-208ENST00000540438 TIMM10P62072 90 aa20.38■□□□□ 0.85
USP28-208ENST00000540438 RBM8AQ9Y5S9 174 aaKnown RBP20.38■□□□□ 0.85
USP28-208ENST00000540438 LMBR1LQ6UX01 489 aa20.38■□□□□ 0.85
USP28-208ENST00000540438 DBNDD2Q9BQY9 259 aa20.38■□□□□ 0.85
USP28-208ENST00000540438 LARP1Q6PKG0 1096 aaKnown RBP20.37■□□□□ 0.85
USP28-208ENST00000540438 ALDH1L1O75891 902 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms