RNA–Protein interactions for RNA: ENST00000539847.1

CCDC60-204, Transcript of coiled-coil domain containing 60, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene CCDC60, Length 581 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60-204ENST00000539847 ANKRD36BQ8N2N9 1353 aa9.68□□□□□ -0.86
CCDC60-204ENST00000539847 GRIN3BO60391 1043 aa9.68□□□□□ -0.86
CCDC60-204ENST00000539847 FRAT2O75474 233 aaPredicted RBP9.68□□□□□ -0.86
CCDC60-204ENST00000539847 C7P10643 843 aa9.68□□□□□ -0.86
CCDC60-204ENST00000539847 PPP2R1AP30153 589 aa9.68□□□□□ -0.86
CCDC60-204ENST00000539847 GPR162Q16538 588 aa9.68□□□□□ -0.86
CCDC60-204ENST00000539847 NME9Q86XW9 330 aa9.68□□□□□ -0.86
CCDC60-204ENST00000539847 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.68□□□□□ -0.86
CCDC60-204ENST00000539847 KNSTRNQ9Y448 316 aa9.68□□□□□ -0.86
CCDC60-204ENST00000539847 COL24A1Q17RW2 1714 aa9.68□□□□□ -0.86
CCDC60-204ENST00000539847 PNPLA7Q6ZV29 1317 aa9.67□□□□□ -0.86
CCDC60-204ENST00000539847 SENP3-EIF4A1A0A087X0R7 540 aa9.67□□□□□ -0.86
CCDC60-204ENST00000539847 A6NJR5 290 aa9.67□□□□□ -0.86
CCDC60-204ENST00000539847 C20orf194Q5TEA3 1177 aa9.67□□□□□ -0.86
CCDC60-204ENST00000539847 TFCP2L1Q9NZI6 479 aa9.67□□□□□ -0.86
CCDC60-204ENST00000539847 BTAF1O14981 1849 aa9.67□□□□□ -0.86
CCDC60-204ENST00000539847 FAM208AQ9UK61 1670 aaKnown RBP9.67□□□□□ -0.86
CCDC60-204ENST00000539847 GIGYF1O75420 1035 aaPredicted RBP9.66□□□□□ -0.86
CCDC60-204ENST00000539847 PDIA4P13667 645 aaKnown RBP9.66□□□□□ -0.86
CCDC60-204ENST00000539847 C3orf67Q6ZVT6 689 aa9.66□□□□□ -0.86
CCDC60-204ENST00000539847 METRNQ9UJH8 293 aa9.66□□□□□ -0.86
CCDC60-204ENST00000539847 A0A1W2PP64 1363 aa9.65□□□□□ -0.86
CCDC60-204ENST00000539847 RTL1A6NKG5 1358 aa9.65□□□□□ -0.86
CCDC60-204ENST00000539847 POTEIP0CG38 1075 aa9.65□□□□□ -0.86
CCDC60-204ENST00000539847 GLIPR1L2Q4G1C9 344 aa9.65□□□□□ -0.86
CCDC60-204ENST00000539847 FLAD1Q8NFF5 587 aa9.65□□□□□ -0.86
CCDC60-204ENST00000539847 SLC12A5Q9H2X9 1139 aa9.65□□□□□ -0.86
CCDC60-204ENST00000539847 ANTXR1Q9H6X2 564 aa9.65□□□□□ -0.86
CCDC60-204ENST00000539847 CDHR5Q9HBB8 845 aa9.65□□□□□ -0.86
CCDC60-204ENST00000539847 GOLGB1Q14789 3259 aaKnown RBP9.64□□□□□ -0.87
CCDC60-204ENST00000539847 KAT6BQ8WYB5 2073 aa9.64□□□□□ -0.87
CCDC60-204ENST00000539847 FSD2A1L4K1 749 aa9.64□□□□□ -0.87
CCDC60-204ENST00000539847 CNGB1Q14028 1251 aaPredicted RBP9.64□□□□□ -0.87
CCDC60-204ENST00000539847 CC2D1BQ5T0F9 858 aaKnown RBP9.64□□□□□ -0.87
CCDC60-204ENST00000539847 ZCRB1Q8TBF4 217 aaKnown RBP9.64□□□□□ -0.87
CCDC60-204ENST00000539847 DDX54Q8TDD1 881 aaKnown RBP9.64□□□□□ -0.87
CCDC60-204ENST00000539847 UPF2Q9HAU5 1272 aaKnown RBP9.64□□□□□ -0.87
CCDC60-204ENST00000539847 CD2APQ9Y5K6 639 aa9.64□□□□□ -0.87
CCDC60-204ENST00000539847 LTN1O94822 1766 aa9.64□□□□□ -0.87
CCDC60-204ENST00000539847 NSD2O96028 1365 aa9.63□□□□□ -0.87
CCDC60-204ENST00000539847 TRAK2O60296 914 aa9.63□□□□□ -0.87
CCDC60-204ENST00000539847 SLC34A2O95436 690 aa9.63□□□□□ -0.87
CCDC60-204ENST00000539847 HOXC9P31274 260 aa9.63□□□□□ -0.87
CCDC60-204ENST00000539847 SLC4A3P48751 1232 aa9.63□□□□□ -0.87
CCDC60-204ENST00000539847 COG3Q96JB2 828 aa9.63□□□□□ -0.87
CCDC60-204ENST00000539847 NPDC1Q9NQX5 325 aaPredicted RBP9.63□□□□□ -0.87
CCDC60-204ENST00000539847 CCNL1Q9UK58 526 aaPredicted RBP9.63□□□□□ -0.87
CCDC60-204ENST00000539847 KIF24Q5T7B8 1368 aa9.63□□□□□ -0.87
CCDC60-204ENST00000539847 MAP3K19Q56UN5 1328 aa9.62□□□□□ -0.87
CCDC60-204ENST00000539847 CEP350Q5VT06 3117 aa9.62□□□□□ -0.87
CCDC60-204ENST00000539847 PTMSP20962 102 aa9.62□□□□□ -0.87
CCDC60-204ENST00000539847 CLCN1P35523 988 aa9.62□□□□□ -0.87
CCDC60-204ENST00000539847 TTLL12Q14166 644 aaPredicted RBP9.62□□□□□ -0.87
CCDC60-204ENST00000539847 CCDC82Q8N4S0 544 aa9.62□□□□□ -0.87
CCDC60-204ENST00000539847 CLUAP1Q96AJ1 413 aa9.62□□□□□ -0.87
CCDC60-204ENST00000539847 PCMTD1Q96MG8 357 aaPredicted RBP9.62□□□□□ -0.87
CCDC60-204ENST00000539847 CT47B1P0C2W7 299 aaPredicted RBP9.61□□□□□ -0.87
CCDC60-204ENST00000539847 AMPHP49418 695 aa9.61□□□□□ -0.87
CCDC60-204ENST00000539847 IFFO2Q5TF58 517 aa9.61□□□□□ -0.87
CCDC60-204ENST00000539847 SYTL4Q96C24 671 aaPredicted RBP9.61□□□□□ -0.87
CCDC60-204ENST00000539847 TBC1D32Q96NH3 1257 aa9.61□□□□□ -0.87
CCDC60-204ENST00000539847 REPIN1Q9BWE0 567 aaKnown RBP9.61□□□□□ -0.87
CCDC60-204ENST00000539847 LY75O60449 1722 aa9.61□□□□□ -0.87
CCDC60-204ENST00000539847 NSD3Q9BZ95 1437 aa9.6□□□□□ -0.87
CCDC60-204ENST00000539847 WDR63Q8IWG1 891 aa9.6□□□□□ -0.87
CCDC60-204ENST00000539847 NLGN2Q8NFZ4 835 aa9.6□□□□□ -0.87
CCDC60-204ENST00000539847 PCDHGA10Q9Y5H3 936 aa9.6□□□□□ -0.87
CCDC60-204ENST00000539847 MEGF6O75095 1541 aa9.6□□□□□ -0.87
CCDC60-204ENST00000539847 SHANK3Q9BYB0 1731 aa9.59□□□□□ -0.87
CCDC60-204ENST00000539847 PCDH11XQ9BZA7 1347 aa9.59□□□□□ -0.87
CCDC60-204ENST00000539847 PCDH11YQ9BZA8 1340 aa9.59□□□□□ -0.87
CCDC60-204ENST00000539847 GOLGA6L3A6NEY3 463 aa9.59□□□□□ -0.87
CCDC60-204ENST00000539847 MAP3K7O43318 606 aa9.59□□□□□ -0.87
CCDC60-204ENST00000539847 RRP9O43818 475 aaKnown RBP9.59□□□□□ -0.87
CCDC60-204ENST00000539847 PHF14O94880 888 aa9.59□□□□□ -0.87
CCDC60-204ENST00000539847 IGHDP01880 384 aa9.59□□□□□ -0.87
CCDC60-204ENST00000539847 YBX3P16989 372 aaKnown RBP eCLIP9.59□□□□□ -0.87
CCDC60-204ENST00000539847 MRE11P49959 708 aa9.59□□□□□ -0.87
CCDC60-204ENST00000539847 CCDC27Q2M243 656 aa9.59□□□□□ -0.87
CCDC60-204ENST00000539847 TSR1Q2NL82 804 aaKnown RBP9.59□□□□□ -0.87
CCDC60-204ENST00000539847 COL23A1Q86Y22 540 aaPredicted RBP9.59□□□□□ -0.87
CCDC60-204ENST00000539847 RAPGEF4Q8WZA2 1011 aa9.59□□□□□ -0.87
CCDC60-204ENST00000539847 SMARCC1Q92922 1105 aaPredicted RBP9.59□□□□□ -0.87
CCDC60-204ENST00000539847 RWDD1Q9H446 243 aaPredicted RBP9.59□□□□□ -0.87
CCDC60-204ENST00000539847 CHMP5Q9NZZ3 219 aa9.59□□□□□ -0.87
CCDC60-204ENST00000539847 EIF5BO60841 1220 aaKnown RBP9.58□□□□□ -0.88
CCDC60-204ENST00000539847 MCM4P33991 863 aa9.58□□□□□ -0.88
CCDC60-204ENST00000539847 RGS3P49796 1198 aa9.58□□□□□ -0.88
CCDC60-204ENST00000539847 GIGYF2Q6Y7W6 1299 aaKnown RBP9.58□□□□□ -0.88
CCDC60-204ENST00000539847 LTV1Q96GA3 475 aaPredicted RBP9.58□□□□□ -0.88
CCDC60-204ENST00000539847 EPAS1Q99814 870 aa9.58□□□□□ -0.88
CCDC60-204ENST00000539847 PCDHGA4Q9Y5G9 962 aa9.58□□□□□ -0.88
CCDC60-204ENST00000539847 ADCY9O60503 1353 aa9.58□□□□□ -0.88
CCDC60-204ENST00000539847 PLEKHG2Q9H7P9 1386 aa9.58□□□□□ -0.88
CCDC60-204ENST00000539847 ATP10DQ9P241 1426 aa9.57□□□□□ -0.88
CCDC60-204ENST00000539847 TATP17735 454 aaPredicted RBP9.57□□□□□ -0.88
CCDC60-204ENST00000539847 NBPF6Q5VWK0 638 aa9.57□□□□□ -0.88
CCDC60-204ENST00000539847 NBPF4Q96M43 638 aa9.57□□□□□ -0.88
CCDC60-204ENST00000539847 DOT1LQ8TEK3 1739 aa9.56□□□□□ -0.88
CCDC60-204ENST00000539847 TUBGCP6Q96RT7 1819 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms