RNA–Protein interactions for RNA: ENST00000539041.5

SMPDL3A-203, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

TSL 2 BASIC

Gene SMPDL3A, Length 1,755 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-203ENST00000539041 NEURL1BA8MQ27 555 aa25.33■■□□□ 1.65
SMPDL3A-203ENST00000539041 MYD88Q99836 296 aa25.33■■□□□ 1.65
SMPDL3A-203ENST00000539041 ANTXR1Q9H6X2 564 aa25.33■■□□□ 1.65
SMPDL3A-203ENST00000539041 BTG4Q9NY30 223 aa25.33■■□□□ 1.65
SMPDL3A-203ENST00000539041 USP26Q9BXU7 913 aa25.32■■□□□ 1.64
SMPDL3A-203ENST00000539041 PIP4K2AP48426 406 aaPredicted RBP25.31■■□□□ 1.64
SMPDL3A-203ENST00000539041 AEBP2Q6ZN18 517 aaPredicted RBP25.31■■□□□ 1.64
SMPDL3A-203ENST00000539041 ERC2O15083 957 aa25.3■■□□□ 1.64
SMPDL3A-203ENST00000539041 REC8O95072 547 aa25.3■■□□□ 1.64
SMPDL3A-203ENST00000539041 OS9Q13438 667 aaPredicted RBP25.3■■□□□ 1.64
SMPDL3A-203ENST00000539041 GCKRQ14397 625 aa25.3■■□□□ 1.64
SMPDL3A-203ENST00000539041 NUTM1Q86Y26 1132 aa25.3■■□□□ 1.64
SMPDL3A-203ENST00000539041 KAZALD1Q96I82 304 aa25.29■■□□□ 1.64
SMPDL3A-203ENST00000539041 BICC1Q9H694 974 aaKnown RBP25.29■■□□□ 1.64
SMPDL3A-203ENST00000539041 DISP2A7MBM2 1401 aa25.29■■□□□ 1.64
SMPDL3A-203ENST00000539041 ERC1Q8IUD2 1116 aa25.28■■□□□ 1.64
SMPDL3A-203ENST00000539041 TJP1Q07157 1748 aa25.28■■□□□ 1.64
SMPDL3A-203ENST00000539041 TRIM6-TRIM34B2RNG4 842 aa25.28■■□□□ 1.64
SMPDL3A-203ENST00000539041 LRP6O75581 1613 aa25.28■■□□□ 1.64
SMPDL3A-203ENST00000539041 NRAPQ86VF7 1730 aa25.27■■□□□ 1.64
SMPDL3A-203ENST00000539041 PLBD2Q8NHP8 589 aa25.27■■□□□ 1.64
SMPDL3A-203ENST00000539041 RILPL2Q969X0 211 aa25.26■■□□□ 1.63
SMPDL3A-203ENST00000539041 USP42Q9H9J4 1324 aaKnown RBP25.26■■□□□ 1.63
SMPDL3A-203ENST00000539041 NBPF26B4DH59 902 aa25.25■■□□□ 1.63
SMPDL3A-203ENST00000539041 NBPF14Q5TI25 921 aa25.25■■□□□ 1.63
SMPDL3A-203ENST00000539041 NBPF10Q6P3W6 841 aaKnown RBP25.25■■□□□ 1.63
SMPDL3A-203ENST00000539041 NBPF15Q8N660 670 aa25.25■■□□□ 1.63
SMPDL3A-203ENST00000539041 SPRYD3Q8NCJ5 442 aa25.25■■□□□ 1.63
SMPDL3A-203ENST00000539041 PI4K2BQ8TCG2 481 aa25.25■■□□□ 1.63
SMPDL3A-203ENST00000539041 TMOD3Q9NYL9 352 aa25.25■■□□□ 1.63
SMPDL3A-203ENST00000539041 PA2G4Q9UQ80 394 aaKnown RBP25.25■■□□□ 1.63
SMPDL3A-203ENST00000539041 COL15A1P39059 1388 aa25.24■■□□□ 1.63
SMPDL3A-203ENST00000539041 KAT6BQ8WYB5 2073 aa25.24■■□□□ 1.63
SMPDL3A-203ENST00000539041 RABEP1Q15276 862 aa25.24■■□□□ 1.63
SMPDL3A-203ENST00000539041 CHMLP26374 656 aa25.23■■□□□ 1.63
SMPDL3A-203ENST00000539041 CLASRPQ8N2M8 674 aaKnown RBP25.23■■□□□ 1.63
SMPDL3A-203ENST00000539041 ESYT1Q9BSJ8 1104 aa25.23■■□□□ 1.63
SMPDL3A-203ENST00000539041 TNKS1BP1Q9C0C2 1729 aaKnown RBP25.23■■□□□ 1.63
SMPDL3A-203ENST00000539041 TTC41PQ6P2S7 1318 aa25.23■■□□□ 1.63
SMPDL3A-203ENST00000539041 RBM42Q9BTD8 480 aaKnown RBP25.23■■□□□ 1.63
SMPDL3A-203ENST00000539041 PTCD1O75127 700 aaKnown RBP25.22■■□□□ 1.63
SMPDL3A-203ENST00000539041 FRAT2O75474 233 aaPredicted RBP25.21■■□□□ 1.63
SMPDL3A-203ENST00000539041 UNC5CLQ8IV45 518 aa25.21■■□□□ 1.63
SMPDL3A-203ENST00000539041 G3BP1Q13283 466 aaKnown RBP eCLIP25.21■■□□□ 1.63
SMPDL3A-203ENST00000539041 CHMP5Q9NZZ3 219 aa25.21■■□□□ 1.63
SMPDL3A-203ENST00000539041 DOT1LQ8TEK3 1739 aa25.2■■□□□ 1.63
SMPDL3A-203ENST00000539041 K7ELQ4 463 aaPredicted RBP25.2■■□□□ 1.62
SMPDL3A-203ENST00000539041 CD2BP2O95400 341 aaKnown RBP25.19■■□□□ 1.62
SMPDL3A-203ENST00000539041 A1BGP04217 495 aa25.19■■□□□ 1.62
SMPDL3A-203ENST00000539041 EPHA10Q5JZY3 1008 aa25.18■■□□□ 1.62
SMPDL3A-203ENST00000539041 ATP5J2-PTCD1G3V325 749 aa25.18■■□□□ 1.62
SMPDL3A-203ENST00000539041 GLRX3O76003 335 aaKnown RBP25.18■■□□□ 1.62
SMPDL3A-203ENST00000539041 TTLL7Q6ZT98 887 aa25.18■■□□□ 1.62
SMPDL3A-203ENST00000539041 CNTROBQ8N137 903 aa25.18■■□□□ 1.62
SMPDL3A-203ENST00000539041 GPATCH3Q96I76 525 aa25.18■■□□□ 1.62
SMPDL3A-203ENST00000539041 NWD2Q9ULI1 1742 aa25.17■■□□□ 1.62
SMPDL3A-203ENST00000539041 IFIT2P09913 472 aaKnown RBP25.17■■□□□ 1.62
SMPDL3A-203ENST00000539041 UBE3BQ7Z3V4 1068 aa25.17■■□□□ 1.62
SMPDL3A-203ENST00000539041 A0A087WZG4 1122 aa25.16■■□□□ 1.62
SMPDL3A-203ENST00000539041 SASH1O94885 1247 aa25.16■■□□□ 1.62
SMPDL3A-203ENST00000539041 DEKP35659 375 aaKnown RBP25.16■■□□□ 1.62
SMPDL3A-203ENST00000539041 RABL6Q3YEC7 729 aaPredicted RBP25.16■■□□□ 1.62
SMPDL3A-203ENST00000539041 VSIG10Q8N0Z9 540 aa25.16■■□□□ 1.62
SMPDL3A-203ENST00000539041 PIGBQ92521 554 aa25.16■■□□□ 1.62
SMPDL3A-203ENST00000539041 TEX13AQ9BXU3 409 aaPredicted RBP25.16■■□□□ 1.62
SMPDL3A-203ENST00000539041 ECHDC1Q9NTX5 307 aa25.16■■□□□ 1.62
SMPDL3A-203ENST00000539041 ANKRD36CQ5JPF3 1778 aa25.15■■□□□ 1.62
SMPDL3A-203ENST00000539041 MAP4K4O95819 1239 aaPredicted RBP25.15■■□□□ 1.62
SMPDL3A-203ENST00000539041 CASP7P55210 303 aa25.15■■□□□ 1.62
SMPDL3A-203ENST00000539041 DDIT3P35638 169 aa25.14■■□□□ 1.62
SMPDL3A-203ENST00000539041 AACSQ86V21 672 aa25.14■■□□□ 1.62
SMPDL3A-203ENST00000539041 JARID2Q92833 1246 aaPredicted RBP25.14■■□□□ 1.62
SMPDL3A-203ENST00000539041 EPB41L2O43491 1005 aaKnown RBP25.13■■□□□ 1.61
SMPDL3A-203ENST00000539041 MCCP23508 829 aa25.13■■□□□ 1.61
SMPDL3A-203ENST00000539041 COPRSQ9NQ92 184 aa25.13■■□□□ 1.61
SMPDL3A-203ENST00000539041 ASAP1Q9ULH1 1129 aa25.13■■□□□ 1.61
SMPDL3A-203ENST00000539041 SIL1Q9H173 461 aa25.13■■□□□ 1.61
SMPDL3A-203ENST00000539041 ATG3Q9NT62 314 aa25.13■■□□□ 1.61
SMPDL3A-203ENST00000539041 CWC25Q9NXE8 425 aaPredicted RBP25.13■■□□□ 1.61
SMPDL3A-203ENST00000539041 BCL9O00512 1426 aa25.12■■□□□ 1.61
SMPDL3A-203ENST00000539041 H7C1W4 665 aa25.12■■□□□ 1.61
SMPDL3A-203ENST00000539041 EXOC5O00471 708 aa25.12■■□□□ 1.61
SMPDL3A-203ENST00000539041 RFX5P48382 616 aaPredicted RBP25.12■■□□□ 1.61
SMPDL3A-203ENST00000539041 ANO2Q9NQ90 1003 aa25.12■■□□□ 1.61
SMPDL3A-203ENST00000539041 CIZ1Q9ULV3 898 aaPredicted RBP25.12■■□□□ 1.61
SMPDL3A-203ENST00000539041 KLHDC4Q8TBB5 520 aa25.1■■□□□ 1.61
SMPDL3A-203ENST00000539041 EAF2Q96CJ1 260 aaPredicted RBP25.1■■□□□ 1.61
SMPDL3A-203ENST00000539041 ZBTB3Q9H5J0 574 aa25.1■■□□□ 1.61
SMPDL3A-203ENST00000539041 ST18O60284 1047 aa25.1■■□□□ 1.61
SMPDL3A-203ENST00000539041 HSP90AA1P07900 732 aaKnown RBP25.1■■□□□ 1.61
SMPDL3A-203ENST00000539041 DNAJC10Q8IXB1 793 aa25.1■■□□□ 1.61
SMPDL3A-203ENST00000539041 CCDC191Q8NCU4 936 aa25.1■■□□□ 1.61
SMPDL3A-203ENST00000539041 PTPN12Q05209 780 aaKnown RBP25.09■■□□□ 1.61
SMPDL3A-203ENST00000539041 CDCA7Q9BWT1 371 aaPredicted RBP25.09■■□□□ 1.61
SMPDL3A-203ENST00000539041 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.09■■□□□ 1.61
SMPDL3A-203ENST00000539041 ANAPC15P60006 121 aa25.08■■□□□ 1.61
SMPDL3A-203ENST00000539041 NUP98P52948 1817 aa25.08■■□□□ 1.61
SMPDL3A-203ENST00000539041 SGSM2O43147 1006 aa25.07■■□□□ 1.6
SMPDL3A-203ENST00000539041 STARD3NLO95772 234 aa25.07■■□□□ 1.6
SMPDL3A-203ENST00000539041 CCDC8Q9H0W5 538 aaPredicted RBP25.07■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms