RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-209ENST00000538654 MAP4K4O95819 1239 aaPredicted RBP10.72□□□□□ -0.69
SNHG1-209ENST00000538654 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.72□□□□□ -0.696e-32■□□□□ 8.9
SNHG1-209ENST00000538654 UPF3BQ9BZI7 483 aaKnown RBP10.72□□□□□ -0.69
SNHG1-209ENST00000538654 TMEM51Q9NW97 253 aa10.72□□□□□ -0.69
SNHG1-209ENST00000538654 SMC3Q9UQE7 1217 aa10.72□□□□□ -0.69
SNHG1-209ENST00000538654 ATP7BP35670 1465 aa10.72□□□□□ -0.69
SNHG1-209ENST00000538654 TRIM6-TRIM34B2RNG4 842 aa10.72□□□□□ -0.69
SNHG1-209ENST00000538654 KRT222Q8N1A0 295 aa10.72□□□□□ -0.69
SNHG1-209ENST00000538654 STAP2Q9UGK3 403 aa10.72□□□□□ -0.69
SNHG1-209ENST00000538654 FIBPO43427 364 aa10.71□□□□□ -0.69
SNHG1-209ENST00000538654 SLFN14P0C7P3 912 aa10.71□□□□□ -0.69
SNHG1-209ENST00000538654 SYT1P21579 422 aa10.71□□□□□ -0.69
SNHG1-209ENST00000538654 RILPL2Q969X0 211 aa10.71□□□□□ -0.69
SNHG1-209ENST00000538654 KLHL42Q9P2K6 505 aa10.71□□□□□ -0.69
SNHG1-209ENST00000538654 LIMCH1Q9UPQ0 1083 aa10.71□□□□□ -0.69
SNHG1-209ENST00000538654 AP5Z1O43299 807 aa10.71□□□□□ -0.69
SNHG1-209ENST00000538654 TNNT1P13805 278 aa10.71□□□□□ -0.69
SNHG1-209ENST00000538654 PTGS1P23219 599 aa10.71□□□□□ -0.69
SNHG1-209ENST00000538654 KIF18AQ8NI77 898 aa10.71□□□□□ -0.69
SNHG1-209ENST00000538654 MINK1Q8N4C8 1332 aaPredicted RBP10.71□□□□□ -0.7
SNHG1-209ENST00000538654 GNAI2P04899 355 aa10.71□□□□□ -0.7
SNHG1-209ENST00000538654 CHRM1P11229 460 aaPredicted RBP10.71□□□□□ -0.7
SNHG1-209ENST00000538654 MAP3K11Q16584 847 aa10.71□□□□□ -0.7
SNHG1-209ENST00000538654 SPTY2D1Q68D10 685 aaPredicted RBP10.71□□□□□ -0.7
SNHG1-209ENST00000538654 ZNF397Q8NF99 534 aaPredicted RBP10.71□□□□□ -0.7
SNHG1-209ENST00000538654 RTF1Q92541 710 aaKnown RBP10.71□□□□□ -0.7
SNHG1-209ENST00000538654 AATKQ6ZMQ8 1374 aa10.7□□□□□ -0.7
SNHG1-209ENST00000538654 TERF2Q15554 542 aa10.7□□□□□ -0.7
SNHG1-209ENST00000538654 STK26Q9P289 416 aa10.7□□□□□ -0.7
SNHG1-209ENST00000538654 DRC7Q8IY82 874 aa10.7□□□□□ -0.7
SNHG1-209ENST00000538654 CALCOCO1Q9P1Z2 691 aa10.7□□□□□ -0.7
SNHG1-209ENST00000538654 CCDC171Q6TFL3 1326 aa10.69□□□□□ -0.7
SNHG1-209ENST00000538654 CHL1O00533 1208 aa10.69□□□□□ -0.7
SNHG1-209ENST00000538654 C16orf45Q96MC5 204 aaPredicted RBP10.69□□□□□ -0.7
SNHG1-209ENST00000538654 TIGD1Q96MW7 591 aa10.69□□□□□ -0.7
SNHG1-209ENST00000538654 PRAM1Q96QH2 718 aa10.69□□□□□ -0.7
SNHG1-209ENST00000538654 CABP1Q9NZU7 370 aa10.69□□□□□ -0.7
SNHG1-209ENST00000538654 NEMFO60524 1076 aa10.69□□□□□ -0.7
SNHG1-209ENST00000538654 CAVIN2O95810 425 aa10.69□□□□□ -0.7
SNHG1-209ENST00000538654 SLC20A2Q08357 652 aa10.69□□□□□ -0.7
SNHG1-209ENST00000538654 MKRN4PQ13434 485 aaPredicted RBP10.69□□□□□ -0.7
SNHG1-209ENST00000538654 RNF20Q5VTR2 975 aa10.69□□□□□ -0.7
SNHG1-209ENST00000538654 CCDC186Q7Z3E2 898 aa10.69□□□□□ -0.7
SNHG1-209ENST00000538654 ZSCAN31Q96LW9 406 aaPredicted RBP10.69□□□□□ -0.7
SNHG1-209ENST00000538654 TTC14Q96N46 770 aa10.69□□□□□ -0.7
SNHG1-209ENST00000538654 CDK19Q9BWU1 502 aa10.69□□□□□ -0.7
SNHG1-209ENST00000538654 NUP62CLQ9H1M0 184 aa10.69□□□□□ -0.7
SNHG1-209ENST00000538654 GNAI3P08754 354 aa10.68□□□□□ -0.7
SNHG1-209ENST00000538654 FOXD4Q12950 439 aaPredicted RBP10.68□□□□□ -0.7
SNHG1-209ENST00000538654 TPD52L1Q16890 204 aaPredicted RBP10.68□□□□□ -0.7
SNHG1-209ENST00000538654 MRRFQ96E11 262 aaKnown RBP10.68□□□□□ -0.7
SNHG1-209ENST00000538654 RAD50Q92878 1312 aa10.68□□□□□ -0.7
SNHG1-209ENST00000538654 ARHGEF10O15013 1369 aa10.68□□□□□ -0.7
SNHG1-209ENST00000538654 TYRO3Q06418 890 aa10.68□□□□□ -0.7
SNHG1-209ENST00000538654 KRT24Q2M2I5 525 aa10.68□□□□□ -0.7
SNHG1-209ENST00000538654 SLFNL1Q499Z3 407 aa10.68□□□□□ -0.7
SNHG1-209ENST00000538654 ZSCAN25Q6NSZ9 544 aa10.68□□□□□ -0.7
SNHG1-209ENST00000538654 SH2B1Q9NRF2 756 aaPredicted RBP10.68□□□□□ -0.7
SNHG1-209ENST00000538654 ELP1O95163 1332 aa10.68□□□□□ -0.7
SNHG1-209ENST00000538654 FAM83GA6ND36 823 aa10.67□□□□□ -0.7
SNHG1-209ENST00000538654 CDC25BP30305 580 aa10.67□□□□□ -0.7
SNHG1-209ENST00000538654 CEP135Q66GS9 1140 aa10.67□□□□□ -0.7
SNHG1-209ENST00000538654 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.67□□□□□ -0.7
SNHG1-209ENST00000538654 TSPYL1Q9H0U9 437 aa10.67□□□□□ -0.7
SNHG1-209ENST00000538654 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.67□□□□□ -0.7
SNHG1-209ENST00000538654 EXOC6BQ9Y2D4 811 aa10.67□□□□□ -0.7
SNHG1-209ENST00000538654 IVNS1ABPQ9Y6Y0 642 aa10.67□□□□□ -0.7
SNHG1-209ENST00000538654 ZNF75DP51815 510 aa10.67□□□□□ -0.7
SNHG1-209ENST00000538654 AK2P54819 239 aa10.67□□□□□ -0.7
SNHG1-209ENST00000538654 KRT85P78386 507 aa10.67□□□□□ -0.7
SNHG1-209ENST00000538654 DNM1Q05193 864 aaKnown RBP10.67□□□□□ -0.7
SNHG1-209ENST00000538654 PLA2G4DQ86XP0 818 aa10.67□□□□□ -0.7
SNHG1-209ENST00000538654 IPO4Q8TEX9 1081 aaKnown RBP10.67□□□□□ -0.7
SNHG1-209ENST00000538654 TRIM5Q9C035 493 aa10.67□□□□□ -0.7
SNHG1-209ENST00000538654 MRVI1Q9Y6F6 885 aa10.67□□□□□ -0.7
SNHG1-209ENST00000538654 EDC4Q6P2E9 1401 aaKnown RBP10.67□□□□□ -0.7
SNHG1-209ENST00000538654 SIGLEC1Q9BZZ2 1709 aa10.67□□□□□ -0.7
SNHG1-209ENST00000538654 SKIV2LQ15477 1246 aaKnown RBP10.66□□□□□ -0.7
SNHG1-209ENST00000538654 NUTM2DQ5VT03 806 aaPredicted RBP10.66□□□□□ -0.7
SNHG1-209ENST00000538654 FAM53CQ9NYF3 392 aa10.66□□□□□ -0.7
SNHG1-209ENST00000538654 MTMR6Q9Y217 621 aa10.66□□□□□ -0.7
SNHG1-209ENST00000538654 SNX14Q9Y5W7 946 aa10.66□□□□□ -0.7
SNHG1-209ENST00000538654 KCNJ4P48050 445 aa10.66□□□□□ -0.7
SNHG1-209ENST00000538654 ATP8B2P98198 1209 aa10.66□□□□□ -0.7
SNHG1-209ENST00000538654 PDE4DQ08499 809 aa10.66□□□□□ -0.7
SNHG1-209ENST00000538654 TDRD7Q8NHU6 1098 aaKnown RBP10.66□□□□□ -0.7
SNHG1-209ENST00000538654 ERO1AQ96HE7 468 aa10.66□□□□□ -0.7
SNHG1-209ENST00000538654 TNMDQ9H2S6 317 aa10.66□□□□□ -0.7
SNHG1-209ENST00000538654 DDX19AQ9NUU7 478 aaKnown RBP10.66□□□□□ -0.7
SNHG1-209ENST00000538654 EMILIN1Q9Y6C2 1016 aa10.66□□□□□ -0.7
SNHG1-209ENST00000538654 KIF2AO00139 706 aaPredicted RBP10.65□□□□□ -0.7
SNHG1-209ENST00000538654 DCTN1Q14203 1278 aa10.65□□□□□ -0.7
SNHG1-209ENST00000538654 RBM26Q5T8P6 1007 aaKnown RBP10.65□□□□□ -0.7
SNHG1-209ENST00000538654 TSHZ3Q63HK5 1081 aa10.65□□□□□ -0.7
SNHG1-209ENST00000538654 GGT6Q6P531 493 aa10.65□□□□□ -0.7
SNHG1-209ENST00000538654 RUFY3Q7L099 469 aa10.65□□□□□ -0.7
SNHG1-209ENST00000538654 GPATCH3Q96I76 525 aa10.65□□□□□ -0.7
SNHG1-209ENST00000538654 SGSM2O43147 1006 aa10.65□□□□□ -0.7
SNHG1-209ENST00000538654 GJB2P29033 226 aa10.65□□□□□ -0.7
SNHG1-209ENST00000538654 SLC4A10Q6U841 1118 aa10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms