RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 CEP83Q9Y592 693 aa12.63□□□□□ -0.39
RTN3-208ENST00000537981 AATKQ6ZMQ8 1374 aa12.63□□□□□ -0.39
RTN3-208ENST00000537981 PLEKHG2Q9H7P9 1386 aa12.63□□□□□ -0.39
RTN3-208ENST00000537981 GTPBP6O43824 516 aaPredicted RBP12.62□□□□□ -0.39
RTN3-208ENST00000537981 CCDC172P0C7W6 258 aa12.62□□□□□ -0.39
RTN3-208ENST00000537981 ZSCAN22P10073 491 aaPredicted RBP12.62□□□□□ -0.39
RTN3-208ENST00000537981 LMAN1P49257 510 aa12.62□□□□□ -0.39
RTN3-208ENST00000537981 CREBRFQ8IUR6 639 aa12.62□□□□□ -0.39
RTN3-208ENST00000537981 PLEKHA4Q9H4M7 779 aa12.62□□□□□ -0.39
RTN3-208ENST00000537981 POGZQ7Z3K3 1410 aa12.62□□□□□ -0.39
RTN3-208ENST00000537981 IFIT2P09913 472 aaKnown RBP12.62□□□□□ -0.39
RTN3-208ENST00000537981 SKILP12757 684 aa12.62□□□□□ -0.39
RTN3-208ENST00000537981 DNAJC25Q9H1X3 360 aa12.62□□□□□ -0.39
RTN3-208ENST00000537981 FRMPD1Q5SYB0 1578 aa12.61□□□□□ -0.39
RTN3-208ENST00000537981 RTL1A6NKG5 1358 aa12.61□□□□□ -0.39
RTN3-208ENST00000537981 ATP2B1P20020 1258 aa12.61□□□□□ -0.39
RTN3-208ENST00000537981 CCZ1BP86790 482 aa12.61□□□□□ -0.39
RTN3-208ENST00000537981 CCZ1P86791 482 aaPredicted RBP12.61□□□□□ -0.39
RTN3-208ENST00000537981 FILIP1Q7Z7B0 1213 aa12.61□□□□□ -0.39
RTN3-208ENST00000537981 INTS4Q96HW7 963 aaKnown RBP12.61□□□□□ -0.39
RTN3-208ENST00000537981 DCTPP1Q9H773 170 aa12.61□□□□□ -0.39
RTN3-208ENST00000537981 STK26Q9P289 416 aa12.61□□□□□ -0.39
RTN3-208ENST00000537981 FANCGO15287 622 aa12.61□□□□□ -0.39
RTN3-208ENST00000537981 LARGE1O95461 756 aa12.61□□□□□ -0.39
RTN3-208ENST00000537981 CPA1P15085 419 aa12.61□□□□□ -0.39
RTN3-208ENST00000537981 TTC31Q49AM3 519 aaPredicted RBP12.61□□□□□ -0.39
RTN3-208ENST00000537981 FBXO18Q8NFZ0 1043 aa12.61□□□□□ -0.39
RTN3-208ENST00000537981 UBXN6Q9BZV1 441 aa12.61□□□□□ -0.39
RTN3-208ENST00000537981 SHANK2Q9UPX8 1470 aa12.61□□□□□ -0.39
RTN3-208ENST00000537981 H3BQF6 201 aa12.6□□□□□ -0.39
RTN3-208ENST00000537981 TBC1D8O95759 1140 aa12.6□□□□□ -0.39
RTN3-208ENST00000537981 F13A1P00488 732 aa12.6□□□□□ -0.39
RTN3-208ENST00000537981 CFAP70Q5T0N1 1121 aa12.6□□□□□ -0.39
RTN3-208ENST00000537981 CCAR2Q8N163 923 aaKnown RBP12.6□□□□□ -0.39
RTN3-208ENST00000537981 MRPL50Q8N5N7 158 aaKnown RBP12.6□□□□□ -0.39
RTN3-208ENST00000537981 ZNF622Q969S3 477 aaKnown RBP eCLIP12.6□□□□□ -0.393e-7■■■■□ 19.7
RTN3-208ENST00000537981 STX6O43752 255 aa12.6□□□□□ -0.39
RTN3-208ENST00000537981 TEX35Q5T0J7 233 aa12.6□□□□□ -0.39
RTN3-208ENST00000537981 CXorf56Q9H5V9 222 aa12.6□□□□□ -0.39
RTN3-208ENST00000537981 ANO2Q9NQ90 1003 aa12.6□□□□□ -0.39
RTN3-208ENST00000537981 ARHGEF5Q12774 1597 aa12.6□□□□□ -0.39
RTN3-208ENST00000537981 REREQ9P2R6 1566 aa12.6□□□□□ -0.39
RTN3-208ENST00000537981 ABCC1P33527 1531 aa12.6□□□□□ -0.39
RTN3-208ENST00000537981 CASTP20810 708 aaKnown RBP12.59□□□□□ -0.39
RTN3-208ENST00000537981 HS6ST3Q8IZP7 471 aa12.59□□□□□ -0.39
RTN3-208ENST00000537981 RGS12O14924 1447 aa12.59□□□□□ -0.39
RTN3-208ENST00000537981 A0A1B0GUL7 405 aa12.59□□□□□ -0.39
RTN3-208ENST00000537981 CCDC69A6NI79 296 aa12.59□□□□□ -0.39
RTN3-208ENST00000537981 TTC6Q86TZ1 520 aa12.59□□□□□ -0.39
RTN3-208ENST00000537981 ARHGEF40Q8TER5 1519 aa12.58□□□□□ -0.39
RTN3-208ENST00000537981 SMC1AQ14683 1233 aaKnown RBP12.58□□□□□ -0.4
RTN3-208ENST00000537981 AXDND1Q5T1B0 1012 aaPredicted RBP12.58□□□□□ -0.4
RTN3-208ENST00000537981 NBPF6Q5VWK0 638 aa12.58□□□□□ -0.4
RTN3-208ENST00000537981 CASC1Q6TDU7 716 aa12.58□□□□□ -0.4
RTN3-208ENST00000537981 CWC27Q6UX04 472 aaKnown RBP12.58□□□□□ -0.4
RTN3-208ENST00000537981 NBPF4Q96M43 638 aa12.58□□□□□ -0.4
RTN3-208ENST00000537981 BRMS1Q9HCU9 246 aa12.58□□□□□ -0.4
RTN3-208ENST00000537981 ORC3Q9UBD5 711 aaPredicted RBP12.58□□□□□ -0.4
RTN3-208ENST00000537981 ADAM21Q9UKJ8 722 aa12.58□□□□□ -0.4
RTN3-208ENST00000537981 CCDC171Q6TFL3 1326 aa12.58□□□□□ -0.4
RTN3-208ENST00000537981 MAP3K11Q16584 847 aa12.58□□□□□ -0.4
RTN3-208ENST00000537981 CCDC93Q567U6 631 aa12.58□□□□□ -0.4
RTN3-208ENST00000537981 FERMT3Q86UX7 667 aa12.58□□□□□ -0.4
RTN3-208ENST00000537981 PDRG1Q9NUG6 133 aa12.58□□□□□ -0.4
RTN3-208ENST00000537981 SUFUQ9UMX1 484 aa12.58□□□□□ -0.4
RTN3-208ENST00000537981 RICTORQ6R327 1708 aa12.58□□□□□ -0.4
RTN3-208ENST00000537981 EIF3CLB5ME19 914 aaKnown RBP12.57□□□□□ -0.4
RTN3-208ENST00000537981 TPM4P67936 248 aa12.57□□□□□ -0.4
RTN3-208ENST00000537981 CTR9Q6PD62 1173 aa12.57□□□□□ -0.4
RTN3-208ENST00000537981 TMCO3Q6UWJ1 677 aa12.57□□□□□ -0.4
RTN3-208ENST00000537981 EIF3CQ99613 913 aaKnown RBP12.57□□□□□ -0.4
RTN3-208ENST00000537981 ESYT1Q9BSJ8 1104 aa12.57□□□□□ -0.4
RTN3-208ENST00000537981 L2HGDHQ9H9P8 463 aa12.57□□□□□ -0.4
RTN3-208ENST00000537981 DACT1Q9NYF0 836 aa12.57□□□□□ -0.4
RTN3-208ENST00000537981 ABCC4O15439 1325 aa12.57□□□□□ -0.4
RTN3-208ENST00000537981 VAMP4O75379 141 aa12.57□□□□□ -0.4
RTN3-208ENST00000537981 PLEKHO1Q53GL0 409 aaPredicted RBP12.57□□□□□ -0.4
RTN3-208ENST00000537981 E4F1Q66K89 784 aaPredicted RBP12.57□□□□□ -0.4
RTN3-208ENST00000537981 UNC5CLQ8IV45 518 aa12.57□□□□□ -0.4
RTN3-208ENST00000537981 GOLGA5Q8TBA6 731 aa12.57□□□□□ -0.4
RTN3-208ENST00000537981 NUP62CLQ9H1M0 184 aa12.57□□□□□ -0.4
RTN3-208ENST00000537981 ATP10DQ9P241 1426 aa12.56□□□□□ -0.4
RTN3-208ENST00000537981 ALDH1L2Q3SY69 923 aa12.56□□□□□ -0.4
RTN3-208ENST00000537981 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.56□□□□□ -0.43e-6■■■□□ 16.3
RTN3-208ENST00000537981 PTPRTO14522 1441 aa12.56□□□□□ -0.4
RTN3-208ENST00000537981 HTATSF1O43719 755 aaKnown RBP12.56□□□□□ -0.4
RTN3-208ENST00000537981 MCCP23508 829 aa12.56□□□□□ -0.4
RTN3-208ENST00000537981 ZNF165P49910 485 aa12.56□□□□□ -0.4
RTN3-208ENST00000537981 C11orf57Q6ZUT1 292 aaPredicted RBP12.56□□□□□ -0.4
RTN3-208ENST00000537981 TDRD7Q8NHU6 1098 aaKnown RBP12.56□□□□□ -0.4
RTN3-208ENST00000537981 CFAP53Q96M91 514 aa12.56□□□□□ -0.4
RTN3-208ENST00000537981 PIK3R4Q99570 1358 aa12.56□□□□□ -0.4
RTN3-208ENST00000537981 PTCH1Q13635 1447 aa12.56□□□□□ -0.4
RTN3-208ENST00000537981 GNAI3P08754 354 aa12.55□□□□□ -0.4
RTN3-208ENST00000537981 SKIDA1Q1XH10 827 aa12.55□□□□□ -0.4
RTN3-208ENST00000537981 TTLL5Q6EMB2 1281 aa12.55□□□□□ -0.4
RTN3-208ENST00000537981 EGFL6Q8IUX8 553 aa12.55□□□□□ -0.4
RTN3-208ENST00000537981 KDM4FA0A1W2PPD8 638 aa12.55□□□□□ -0.4
RTN3-208ENST00000537981 VPS37CA5D8V6 355 aaPredicted RBP12.55□□□□□ -0.4
RTN3-208ENST00000537981 MAGEA9P43362 315 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 122.8 ms