RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 JDP2Q8WYK2 163 aa12.76□□□□□ -0.37
USP28-205ENST00000537706 ADAMTSL1Q8N6G6 1762 aa12.76□□□□□ -0.37
USP28-205ENST00000537706 USP50Q70EL3 339 aaPredicted RBP12.75□□□□□ -0.37
USP28-205ENST00000537706 AFDNP55196 1824 aaKnown RBP12.74□□□□□ -0.37
USP28-205ENST00000537706 NFATC2IPQ8NCF5 419 aa12.74□□□□□ -0.37
USP28-205ENST00000537706 BCL2L12Q9HB09 334 aa12.74□□□□□ -0.37
USP28-205ENST00000537706 SAGE1Q9NXZ1 904 aa12.74□□□□□ -0.37
USP28-205ENST00000537706 FZD9O00144 591 aa12.74□□□□□ -0.37
USP28-205ENST00000537706 CELF2O95319 508 aaKnown RBP12.74□□□□□ -0.37
USP28-205ENST00000537706 AKAP4Q5JQC9 854 aa12.74□□□□□ -0.37
USP28-205ENST00000537706 CST9Q5W186 159 aa12.74□□□□□ -0.37
USP28-205ENST00000537706 SAPCD2Q86UD0 394 aa12.74□□□□□ -0.37
USP28-205ENST00000537706 CNBD1Q8NA66 436 aa12.74□□□□□ -0.37
USP28-205ENST00000537706 ZNF277Q9NRM2 450 aaPredicted RBP12.74□□□□□ -0.37
USP28-205ENST00000537706 GJA3Q9Y6H8 435 aa12.74□□□□□ -0.37
USP28-205ENST00000537706 IARSP41252 1262 aaKnown RBP12.73□□□□□ -0.37
USP28-205ENST00000537706 PRR5LQ6MZQ0 368 aa12.73□□□□□ -0.37
USP28-205ENST00000537706 CTU1Q7Z7A3 348 aaKnown RBP12.73□□□□□ -0.37
USP28-205ENST00000537706 NPM2Q86SE8 214 aaKnown RBP12.73□□□□□ -0.37
USP28-205ENST00000537706 CYP19A1P11511 503 aaPredicted RBP12.72□□□□□ -0.37
USP28-205ENST00000537706 SRGNP10124 158 aa12.72□□□□□ -0.37
USP28-205ENST00000537706 ZBTB1Q9Y2K1 713 aa12.72□□□□□ -0.37
USP28-205ENST00000537706 TRAF5O00463 557 aa12.71□□□□□ -0.37
USP28-205ENST00000537706 FMR1Q06787 632 aaKnown RBP eCLIP12.71□□□□□ -0.37
USP28-205ENST00000537706 TBC1D9BQ66K14 1250 aa12.71□□□□□ -0.37
USP28-205ENST00000537706 SETDB2Q96T68 719 aa12.71□□□□□ -0.37
USP28-205ENST00000537706 CANXP27824 592 aaKnown RBP12.7□□□□□ -0.38
USP28-205ENST00000537706 PKN2Q16513 984 aaKnown RBP12.7□□□□□ -0.38
USP28-205ENST00000537706 CCDC24Q8N4L8 307 aa12.7□□□□□ -0.38
USP28-205ENST00000537706 CASP8AP2Q9UKL3 1982 aa12.7□□□□□ -0.38
USP28-205ENST00000537706 NPR1P16066 1061 aa12.7□□□□□ -0.38
USP28-205ENST00000537706 SYNE4Q8N205 404 aa12.7□□□□□ -0.38
USP28-205ENST00000537706 ADAMTS7Q9UKP4 1686 aa12.69□□□□□ -0.38
USP28-205ENST00000537706 TJP1Q07157 1748 aa12.69□□□□□ -0.38
USP28-205ENST00000537706 ZNF408Q9H9D4 720 aa12.69□□□□□ -0.38
USP28-205ENST00000537706 DLL1O00548 723 aa12.68□□□□□ -0.38
USP28-205ENST00000537706 STARD3NLO95772 234 aa12.68□□□□□ -0.38
USP28-205ENST00000537706 NEUROD1Q13562 356 aa12.68□□□□□ -0.38
USP28-205ENST00000537706 ANKRD26Q9UPS8 1709 aa12.68□□□□□ -0.38
USP28-205ENST00000537706 EIF4A2Q14240 407 aaKnown RBP12.68□□□□□ -0.38
USP28-205ENST00000537706 VSIG10Q8N0Z9 540 aa12.68□□□□□ -0.38
USP28-205ENST00000537706 C7orf43Q8WVR3 580 aa12.68□□□□□ -0.38
USP28-205ENST00000537706 HPS5Q9UPZ3 1129 aa12.68□□□□□ -0.38
USP28-205ENST00000537706 EPS15P42566 896 aa12.67□□□□□ -0.38
USP28-205ENST00000537706 ADARB2Q9NS39 739 aaKnown RBP12.67□□□□□ -0.38
USP28-205ENST00000537706 CCDC102AQ96A19 550 aa12.66□□□□□ -0.38
USP28-205ENST00000537706 HDAC9Q9UKV0 1011 aa12.66□□□□□ -0.38
USP28-205ENST00000537706 ALDH1B1P30837 517 aa12.66□□□□□ -0.38
USP28-205ENST00000537706 CDCA8Q53HL2 280 aa12.66□□□□□ -0.38
USP28-205ENST00000537706 ZNF330Q9Y3S2 320 aaPredicted RBP12.66□□□□□ -0.38
USP28-205ENST00000537706 TRPM7Q96QT4 1865 aa12.65□□□□□ -0.38
USP28-205ENST00000537706 TRPA1O75762 1119 aa12.65□□□□□ -0.38
USP28-205ENST00000537706 SCNN1DP51172 638 aa12.65□□□□□ -0.38
USP28-205ENST00000537706 EIF5P55010 431 aaKnown RBP12.65□□□□□ -0.38
USP28-205ENST00000537706 HUNKP57058 714 aa12.65□□□□□ -0.38
USP28-205ENST00000537706 CC2D2BQ6DHV5 1058 aa12.65□□□□□ -0.38
USP28-205ENST00000537706 PSMD1Q99460 953 aa12.65□□□□□ -0.38
USP28-205ENST00000537706 SLC52A2Q9HAB3 445 aa12.65□□□□□ -0.38
USP28-205ENST00000537706 SLX4Q8IY92 1834 aa12.65□□□□□ -0.38
USP28-205ENST00000537706 KIF20BQ96Q89 1820 aa12.65□□□□□ -0.38
USP28-205ENST00000537706 COL11A2P13942 1736 aaPredicted RBP12.65□□□□□ -0.39
USP28-205ENST00000537706 GRIPAP1Q4V328 841 aa12.64□□□□□ -0.39
USP28-205ENST00000537706 NBPF5PQ86XG9 351 aaPredicted RBP12.64□□□□□ -0.39
USP28-205ENST00000537706 TESK2Q96S53 571 aa12.64□□□□□ -0.39
USP28-205ENST00000537706 RNF186Q9NXI6 227 aa12.64□□□□□ -0.39
USP28-205ENST00000537706 FXR1P51114 621 aaKnown RBP eCLIP12.64□□□□□ -0.39
USP28-205ENST00000537706 CDC37L1Q7L3B6 337 aa12.64□□□□□ -0.39
USP28-205ENST00000537706 REM2Q8IYK8 340 aaPredicted RBP12.64□□□□□ -0.39
USP28-205ENST00000537706 LARGE2Q8N3Y3 721 aa12.64□□□□□ -0.39
USP28-205ENST00000537706 ANKRD31Q8N7Z5 1873 aa12.63□□□□□ -0.39
USP28-205ENST00000537706 RGMBQ6NW40 437 aa12.63□□□□□ -0.39
USP28-205ENST00000537706 NIM1KQ8IY84 436 aa12.63□□□□□ -0.39
USP28-205ENST00000537706 SIN3AQ96ST3 1273 aa12.63□□□□□ -0.39
USP28-205ENST00000537706 GLIS2Q9BZE0 524 aaPredicted RBP12.63□□□□□ -0.39
USP28-205ENST00000537706 POLKQ9UBT6 870 aa12.63□□□□□ -0.39
USP28-205ENST00000537706 TTC5Q8N0Z6 440 aa12.62□□□□□ -0.39
USP28-205ENST00000537706 ZC3H15Q8WU90 426 aaKnown RBP12.62□□□□□ -0.39
USP28-205ENST00000537706 TEX13AQ9BXU3 409 aaPredicted RBP12.62□□□□□ -0.39
USP28-205ENST00000537706 TBC1D2BQ9UPU7 963 aa12.62□□□□□ -0.39
USP28-205ENST00000537706 ARFGEF2Q9Y6D5 1785 aa12.62□□□□□ -0.39
USP28-205ENST00000537706 KIF23Q02241 960 aaPredicted RBP12.62□□□□□ -0.39
USP28-205ENST00000537706 SLC39A6Q13433 755 aa12.62□□□□□ -0.39
USP28-205ENST00000537706 C2orf69Q8N8R5 385 aa12.61□□□□□ -0.39
USP28-205ENST00000537706 SLC17A8Q8NDX2 589 aa12.61□□□□□ -0.39
USP28-205ENST00000537706 GPRC5DQ9NZD1 345 aa12.61□□□□□ -0.39
USP28-205ENST00000537706 ZNF652Q9Y2D9 606 aa12.61□□□□□ -0.39
USP28-205ENST00000537706 IL6STP40189 918 aaPredicted RBP12.6□□□□□ -0.39
USP28-205ENST00000537706 TPTE2Q6XPS3 522 aa12.6□□□□□ -0.39
USP28-205ENST00000537706 ZIC5Q96T25 663 aa12.6□□□□□ -0.39
USP28-205ENST00000537706 ZNF157P51786 506 aaPredicted RBP12.6□□□□□ -0.39
USP28-205ENST00000537706 TMX4Q9H1E5 349 aaPredicted RBP12.6□□□□□ -0.39
USP28-205ENST00000537706 PGAP2Q9UHJ9 254 aa12.59□□□□□ -0.39
USP28-205ENST00000537706 KLRG2A4D1S0 409 aaPredicted RBP12.58□□□□□ -0.39
USP28-205ENST00000537706 GTF2E1P29083 439 aaPredicted RBP12.58□□□□□ -0.39
USP28-205ENST00000537706 FBXO46Q6PJ61 603 aaPredicted RBP12.58□□□□□ -0.39
USP28-205ENST00000537706 OLFM4Q6UX06 510 aa12.58□□□□□ -0.39
USP28-205ENST00000537706 BCL2L13Q9BXK5 485 aa12.58□□□□□ -0.4
USP28-205ENST00000537706 GBA2Q9HCG7 927 aaPredicted RBP12.58□□□□□ -0.4
USP28-205ENST00000537706 TNRC18O15417 2968 aaPredicted RBP12.58□□□□□ -0.4
USP28-205ENST00000537706 CDHR2Q9BYE9 1310 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 72.8 ms