RNA–Protein interactions for RNA: ENST00000532602.1

PCDHA9-202, Transcript of protocadherin alpha 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA9, Length 6,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-202ENST00000532602 ST5P78524 1137 aa17.26■□□□□ 0.35
PCDHA9-202ENST00000532602 ABCC10Q5T3U5 1492 aa17.26■□□□□ 0.35
PCDHA9-202ENST00000532602 ZNF213O14771 459 aa17.26■□□□□ 0.35
PCDHA9-202ENST00000532602 MTHFSDQ2M296 383 aaKnown RBP17.26■□□□□ 0.35
PCDHA9-202ENST00000532602 DDX17Q92841 729 aaKnown RBP17.26■□□□□ 0.35
PCDHA9-202ENST00000532602 HMGB1P09429 215 aaKnown RBP17.26■□□□□ 0.35
PCDHA9-202ENST00000532602 COPS6Q7L5N1 327 aa17.26■□□□□ 0.35
PCDHA9-202ENST00000532602 NFATC2IPQ8NCF5 419 aa17.26■□□□□ 0.35
PCDHA9-202ENST00000532602 LMTK3Q96Q04 1460 aa17.26■□□□□ 0.35
PCDHA9-202ENST00000532602 HAND2P61296 217 aa17.25■□□□□ 0.35
PCDHA9-202ENST00000532602 CCT2P78371 535 aaKnown RBP17.25■□□□□ 0.35
PCDHA9-202ENST00000532602 ANKRD18AQ8IVF6 992 aa17.25■□□□□ 0.35
PCDHA9-202ENST00000532602 RAB34Q9BZG1 259 aa17.25■□□□□ 0.35
PCDHA9-202ENST00000532602 MAPKBP1O60336 1514 aa17.25■□□□□ 0.35
PCDHA9-202ENST00000532602 CAMK4Q16566 473 aa17.25■□□□□ 0.35
PCDHA9-202ENST00000532602 SKIDA1Q1XH10 827 aa17.25■□□□□ 0.35
PCDHA9-202ENST00000532602 RALGAPBQ86X10 1494 aa17.25■□□□□ 0.35
PCDHA9-202ENST00000532602 F8W031 263 aaPredicted RBP17.25■□□□□ 0.35
PCDHA9-202ENST00000532602 WDR78Q5VTH9 848 aa17.24■□□□□ 0.35
PCDHA9-202ENST00000532602 POTEJP0CG39 1038 aa17.24■□□□□ 0.35
PCDHA9-202ENST00000532602 CCDC181Q5TID7 509 aa17.24■□□□□ 0.35
PCDHA9-202ENST00000532602 PHAXQ9H814 394 aaKnown RBP17.24■□□□□ 0.35
PCDHA9-202ENST00000532602 MYCNP04198 464 aaPredicted RBP17.24■□□□□ 0.35
PCDHA9-202ENST00000532602 C8orf58Q8NAV2 365 aa17.24■□□□□ 0.35
PCDHA9-202ENST00000532602 NPATQ14207 1427 aa17.24■□□□□ 0.35
PCDHA9-202ENST00000532602 ZRSR2Q15696 482 aaKnown RBP17.24■□□□□ 0.35
PCDHA9-202ENST00000532602 CUL5Q93034 780 aa17.24■□□□□ 0.35
PCDHA9-202ENST00000532602 EHMT1Q9H9B1 1298 aa17.24■□□□□ 0.35
PCDHA9-202ENST00000532602 HMGN5P82970 282 aaKnown RBP17.23■□□□□ 0.35
PCDHA9-202ENST00000532602 KAT6BQ8WYB5 2073 aa17.23■□□□□ 0.35
PCDHA9-202ENST00000532602 ABCC2Q92887 1545 aa17.23■□□□□ 0.35
PCDHA9-202ENST00000532602 SMTNL1A8MU46 457 aa17.23■□□□□ 0.35
PCDHA9-202ENST00000532602 POLKQ9UBT6 870 aa17.23■□□□□ 0.35
PCDHA9-202ENST00000532602 NEFHP12036 1026 aa17.23■□□□□ 0.35
PCDHA9-202ENST00000532602 NUP62CLQ9H1M0 184 aa17.23■□□□□ 0.35
PCDHA9-202ENST00000532602 SETDB2Q96T68 719 aa17.22■□□□□ 0.35
PCDHA9-202ENST00000532602 IL2RBP14784 551 aa17.22■□□□□ 0.35
PCDHA9-202ENST00000532602 AKAP4Q5JQC9 854 aa17.22■□□□□ 0.35
PCDHA9-202ENST00000532602 SIRT1Q96EB6 747 aa17.22■□□□□ 0.35
PCDHA9-202ENST00000532602 IGHDP01880 384 aa17.22■□□□□ 0.35
PCDHA9-202ENST00000532602 SCLT1Q96NL6 688 aa17.22■□□□□ 0.35
PCDHA9-202ENST00000532602 C19orf44Q9H6X5 657 aa17.22■□□□□ 0.35
PCDHA9-202ENST00000532602 VAT1LQ9HCJ6 419 aa17.22■□□□□ 0.35
PCDHA9-202ENST00000532602 TTF1Q15361 905 aaPredicted RBP17.22■□□□□ 0.35
PCDHA9-202ENST00000532602 KRT24Q2M2I5 525 aa17.22■□□□□ 0.35
PCDHA9-202ENST00000532602 MEIS3Q99687 375 aa17.22■□□□□ 0.35
PCDHA9-202ENST00000532602 BTG4Q9NY30 223 aa17.22■□□□□ 0.35
PCDHA9-202ENST00000532602 SLC12A7Q9Y666 1083 aa17.22■□□□□ 0.35
PCDHA9-202ENST00000532602 NIP7Q9Y221 180 aaKnown RBP eCLIP17.21■□□□□ 0.35
PCDHA9-202ENST00000532602 IFIT3O14879 490 aaKnown RBP17.21■□□□□ 0.35
PCDHA9-202ENST00000532602 NEBLO76041 1014 aa17.21■□□□□ 0.35
PCDHA9-202ENST00000532602 SEPT11Q9NVA2 429 aaKnown RBP17.21■□□□□ 0.35
PCDHA9-202ENST00000532602 TRMT1LQ7Z2T5 733 aaKnown RBP17.21■□□□□ 0.35
PCDHA9-202ENST00000532602 MTERF4Q7Z6M4 381 aaKnown RBP17.21■□□□□ 0.35
PCDHA9-202ENST00000532602 CCDC152Q4G0S7 254 aa17.2■□□□□ 0.34
PCDHA9-202ENST00000532602 SH2B1Q9NRF2 756 aaPredicted RBP17.2■□□□□ 0.34
PCDHA9-202ENST00000532602 GOLGA6L10A6NI86 522 aa17.2■□□□□ 0.34
PCDHA9-202ENST00000532602 SPTY2D1Q68D10 685 aaPredicted RBP17.2■□□□□ 0.34
PCDHA9-202ENST00000532602 BAG3O95817 575 aa17.2■□□□□ 0.34
PCDHA9-202ENST00000532602 EIF5P55010 431 aaKnown RBP17.2■□□□□ 0.34
PCDHA9-202ENST00000532602 CETN2P41208 172 aa17.2■□□□□ 0.34
PCDHA9-202ENST00000532602 TMEM266Q2M3C6 531 aa17.2■□□□□ 0.34
PCDHA9-202ENST00000532602 KIF20AO95235 890 aa17.19■□□□□ 0.34
PCDHA9-202ENST00000532602 GCP02774 474 aa17.19■□□□□ 0.34
PCDHA9-202ENST00000532602 IQCEQ6IPM2 695 aa17.19■□□□□ 0.34
PCDHA9-202ENST00000532602 EVI5LQ96CN4 794 aa17.19■□□□□ 0.34
PCDHA9-202ENST00000532602 CCDC191Q8NCU4 936 aa17.19■□□□□ 0.34
PCDHA9-202ENST00000532602 EIF2AK4Q9P2K8 1649 aaKnown RBP17.19■□□□□ 0.34
PCDHA9-202ENST00000532602 A0A1W2PP64 1363 aa17.19■□□□□ 0.34
PCDHA9-202ENST00000532602 SEPT7Q16181 437 aaKnown RBP17.19■□□□□ 0.34
PCDHA9-202ENST00000532602 GOLGA8BA8MQT2 603 aa17.18■□□□□ 0.34
PCDHA9-202ENST00000532602 ECHDC1Q9NTX5 307 aa17.18■□□□□ 0.34
PCDHA9-202ENST00000532602 GOLGA8AA7E2F4 631 aa17.18■□□□□ 0.34
PCDHA9-202ENST00000532602 FAM177A1Q8N128 213 aaPredicted RBP17.18■□□□□ 0.34
PCDHA9-202ENST00000532602 CABP5Q9NP86 173 aa17.18■□□□□ 0.34
PCDHA9-202ENST00000532602 CCDC12Q8WUD4 166 aaPredicted RBP17.18■□□□□ 0.34
PCDHA9-202ENST00000532602 HOXC9P31274 260 aa17.18■□□□□ 0.34
PCDHA9-202ENST00000532602 DZIP3Q86Y13 1208 aaKnown RBP17.18■□□□□ 0.34
PCDHA9-202ENST00000532602 ORAI2Q96SN7 254 aa17.18■□□□□ 0.34
PCDHA9-202ENST00000532602 PA2G4Q9UQ80 394 aaKnown RBP17.18■□□□□ 0.34
PCDHA9-202ENST00000532602 FEZ1Q99689 392 aa17.17■□□□□ 0.34
PCDHA9-202ENST00000532602 TNNQ9UQP3 1299 aa17.17■□□□□ 0.34
PCDHA9-202ENST00000532602 ZNF397Q8NF99 534 aaPredicted RBP17.17■□□□□ 0.34
PCDHA9-202ENST00000532602 EYA1Q99502 592 aa17.17■□□□□ 0.34
PCDHA9-202ENST00000532602 HLA-DOAP06340 250 aa17.17■□□□□ 0.34
PCDHA9-202ENST00000532602 SSRP1Q08945 709 aaKnown RBP17.17■□□□□ 0.34
PCDHA9-202ENST00000532602 AXDND1Q5T1B0 1012 aaPredicted RBP17.17■□□□□ 0.34
PCDHA9-202ENST00000532602 CCDC194A0A1B0GVG4 234 aa17.17■□□□□ 0.34
PCDHA9-202ENST00000532602 CATIPQ7Z7H3 387 aa17.17■□□□□ 0.34
PCDHA9-202ENST00000532602 TSG101Q99816 390 aa17.17■□□□□ 0.34
PCDHA9-202ENST00000532602 CARD14Q9BXL6 1004 aa17.17■□□□□ 0.34
PCDHA9-202ENST00000532602 TFCP2L1Q9NZI6 479 aa17.17■□□□□ 0.34
PCDHA9-202ENST00000532602 DISP1Q96F81 1524 aa17.16■□□□□ 0.34
PCDHA9-202ENST00000532602 C8orf76Q96K31 380 aa17.16■□□□□ 0.34
PCDHA9-202ENST00000532602 SCAND2PQ9GZW5 306 aaPredicted RBP17.16■□□□□ 0.34
PCDHA9-202ENST00000532602 TCOF1Q13428 1488 aaKnown RBP17.16■□□□□ 0.34
PCDHA9-202ENST00000532602 YTHDC2Q9H6S0 1430 aaKnown RBP17.16■□□□□ 0.34
PCDHA9-202ENST00000532602 TBC1D9Q6ZT07 1266 aa17.16■□□□□ 0.34
PCDHA9-202ENST00000532602 TAF4BQ92750 862 aa17.16■□□□□ 0.34
PCDHA9-202ENST00000532602 TSPYL6Q8N831 410 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms