RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 ERICH6Q7L0X2 663 aa25.63■■□□□ 1.69
VPS28-209ENST00000528142 CDCA7Q9BWT1 371 aaPredicted RBP25.63■■□□□ 1.69
VPS28-209ENST00000528142 RAB11FIP3O75154 756 aa25.62■■□□□ 1.69
VPS28-209ENST00000528142 MFAP1P55081 439 aaKnown RBP25.62■■□□□ 1.69
VPS28-209ENST00000528142 MEX3CQ5U5Q3 659 aaKnown RBP25.62■■□□□ 1.69
VPS28-209ENST00000528142 BARGINQ6ZT62 677 aa25.62■■□□□ 1.69
VPS28-209ENST00000528142 MYD88Q99836 296 aa25.62■■□□□ 1.69
VPS28-209ENST00000528142 BCL11AQ9H165 835 aa25.62■■□□□ 1.69
VPS28-209ENST00000528142 AFF2P51816 1311 aa25.61■■□□□ 1.69
VPS28-209ENST00000528142 PLBD2Q8NHP8 589 aa25.61■■□□□ 1.69
VPS28-209ENST00000528142 KAZALD1Q96I82 304 aa25.61■■□□□ 1.69
VPS28-209ENST00000528142 ATG3Q9NT62 314 aa25.61■■□□□ 1.69
VPS28-209ENST00000528142 ASAP1Q9ULH1 1129 aa25.61■■□□□ 1.69
VPS28-209ENST00000528142 GCKRQ14397 625 aa25.6■■□□□ 1.69
VPS28-209ENST00000528142 TBC1D9Q6ZT07 1266 aa25.6■■□□□ 1.69
VPS28-209ENST00000528142 SURF6O75683 361 aaKnown RBP25.6■■□□□ 1.69
VPS28-209ENST00000528142 A1BGP04217 495 aa25.6■■□□□ 1.69
VPS28-209ENST00000528142 PDE1AP54750 535 aa25.6■■□□□ 1.69
VPS28-209ENST00000528142 SUCLG2Q96I99 432 aa25.6■■□□□ 1.69
VPS28-209ENST00000528142 BCL9O00512 1426 aa25.59■■□□□ 1.69
VPS28-209ENST00000528142 VSIG10Q8N0Z9 540 aa25.59■■□□□ 1.69
VPS28-209ENST00000528142 CDC45O75419 566 aa25.58■■□□□ 1.69
VPS28-209ENST00000528142 C22orf23Q9BZE7 217 aa25.58■■□□□ 1.69
VPS28-209ENST00000528142 FAM98CQ17RN3 349 aaKnown RBP25.58■■□□□ 1.68
VPS28-209ENST00000528142 SDSP20132 328 aa25.56■■□□□ 1.68
VPS28-209ENST00000528142 RHPN1Q8TCX5 695 aa25.56■■□□□ 1.68
VPS28-209ENST00000528142 TEX13AQ9BXU3 409 aaPredicted RBP25.56■■□□□ 1.68
VPS28-209ENST00000528142 STAP2Q9UGK3 403 aa25.56■■□□□ 1.68
VPS28-209ENST00000528142 HSP90AB4PQ58FF6 505 aa25.55■■□□□ 1.68
VPS28-209ENST00000528142 TTLL7Q6ZT98 887 aa25.55■■□□□ 1.68
VPS28-209ENST00000528142 ANP32EQ9BTT0 268 aa25.55■■□□□ 1.68
VPS28-209ENST00000528142 BICC1Q9H694 974 aaKnown RBP25.55■■□□□ 1.68
VPS28-209ENST00000528142 MX1P20591 662 aa25.54■■□□□ 1.68
VPS28-209ENST00000528142 DDB1Q16531 1140 aa25.54■■□□□ 1.68
VPS28-209ENST00000528142 MARCH10Q8NA82 808 aaPredicted RBP25.54■■□□□ 1.68
VPS28-209ENST00000528142 KIF1BPQ96EK5 621 aa25.54■■□□□ 1.68
VPS28-209ENST00000528142 ATRNO75882 1429 aa25.53■■□□□ 1.68
VPS28-209ENST00000528142 ITGB4P16144 1822 aa25.53■■□□□ 1.68
VPS28-209ENST00000528142 DNAJC10Q8IXB1 793 aa25.53■■□□□ 1.68
VPS28-209ENST00000528142 ARFGEF2Q9Y6D5 1785 aa25.52■■□□□ 1.68
VPS28-209ENST00000528142 SLC4A3P48751 1232 aa25.52■■□□□ 1.68
VPS28-209ENST00000528142 RBM25P49756 843 aaKnown RBP25.52■■□□□ 1.68
VPS28-209ENST00000528142 IL1RAPL2Q9NP60 686 aa25.52■■□□□ 1.68
VPS28-209ENST00000528142 THSD7AQ9UPZ6 1657 aa25.52■■□□□ 1.68
VPS28-209ENST00000528142 COL15A1P39059 1388 aa25.52■■□□□ 1.68
VPS28-209ENST00000528142 ATP5J2-PTCD1G3V325 749 aa25.51■■□□□ 1.67
VPS28-209ENST00000528142 PRIM1P49642 420 aaKnown RBP25.5■■□□□ 1.67
VPS28-209ENST00000528142 GJD4Q96KN9 370 aaPredicted RBP25.5■■□□□ 1.67
VPS28-209ENST00000528142 AOX1Q06278 1338 aa25.5■■□□□ 1.67
VPS28-209ENST00000528142 CASP7P55210 303 aa25.49■■□□□ 1.67
VPS28-209ENST00000528142 EPHA10Q5JZY3 1008 aa25.49■■□□□ 1.67
VPS28-209ENST00000528142 SLC4A9Q96Q91 983 aa25.49■■□□□ 1.67
VPS28-209ENST00000528142 RBM42Q9BTD8 480 aaKnown RBP25.49■■□□□ 1.67
VPS28-209ENST00000528142 TSHZ3Q63HK5 1081 aa25.49■■□□□ 1.67
VPS28-209ENST00000528142 DOT1LQ8TEK3 1739 aa25.48■■□□□ 1.67
VPS28-209ENST00000528142 STARD3NLO95772 234 aa25.48■■□□□ 1.67
VPS28-209ENST00000528142 DAXXQ9UER7 740 aaPredicted RBP25.48■■□□□ 1.67
VPS28-209ENST00000528142 PA2G4Q9UQ80 394 aaKnown RBP25.48■■□□□ 1.67
VPS28-209ENST00000528142 A0A087WZG4 1122 aa25.47■■□□□ 1.67
VPS28-209ENST00000528142 EIF5BO60841 1220 aaKnown RBP25.47■■□□□ 1.67
VPS28-209ENST00000528142 NUP188Q5SRE5 1749 aa25.47■■□□□ 1.67
VPS28-209ENST00000528142 H7C1W4 665 aa25.47■■□□□ 1.67
VPS28-209ENST00000528142 UBE3BQ7Z3V4 1068 aa25.47■■□□□ 1.67
VPS28-209ENST00000528142 NUTM1Q86Y26 1132 aa25.47■■□□□ 1.67
VPS28-209ENST00000528142 SYTL4Q96C24 671 aaPredicted RBP25.47■■□□□ 1.67
VPS28-209ENST00000528142 RABL6Q3YEC7 729 aaPredicted RBP25.46■■□□□ 1.67
VPS28-209ENST00000528142 ERC1Q8IUD2 1116 aa25.46■■□□□ 1.67
VPS28-209ENST00000528142 JARID2Q92833 1246 aaPredicted RBP25.46■■□□□ 1.67
VPS28-209ENST00000528142 ZBTB3Q9H5J0 574 aa25.46■■□□□ 1.67
VPS28-209ENST00000528142 FBXO41Q8TF61 875 aa25.45■■□□□ 1.66
VPS28-209ENST00000528142 TRPC5Q9UL62 973 aaPredicted RBP25.45■■□□□ 1.66
VPS28-209ENST00000528142 CYP19A1P11511 503 aaPredicted RBP25.44■■□□□ 1.66
VPS28-209ENST00000528142 OS9Q13438 667 aaPredicted RBP25.44■■□□□ 1.66
VPS28-209ENST00000528142 QTRT2Q9H974 415 aaKnown RBP25.44■■□□□ 1.66
VPS28-209ENST00000528142 BECN1Q14457 450 aa25.44■■□□□ 1.66
VPS28-209ENST00000528142 CWC25Q9NXE8 425 aaPredicted RBP25.44■■□□□ 1.66
VPS28-209ENST00000528142 USP42Q9H9J4 1324 aaKnown RBP25.43■■□□□ 1.66
VPS28-209ENST00000528142 ONECUT3O60422 494 aaPredicted RBP25.43■■□□□ 1.66
VPS28-209ENST00000528142 CCDC191Q8NCU4 936 aa25.43■■□□□ 1.66
VPS28-209ENST00000528142 CASC1Q6TDU7 716 aa25.42■■□□□ 1.66
VPS28-209ENST00000528142 PI4K2BQ8TCG2 481 aa25.42■■□□□ 1.66
VPS28-209ENST00000528142 AFDNP55196 1824 aaKnown RBP25.42■■□□□ 1.66
VPS28-209ENST00000528142 RFX5P48382 616 aaPredicted RBP25.42■■□□□ 1.66
VPS28-209ENST00000528142 ISCA1Q9BUE6 129 aa25.42■■□□□ 1.66
VPS28-209ENST00000528142 KAT6BQ8WYB5 2073 aa25.41■■□□□ 1.66
VPS28-209ENST00000528142 SASH1O94885 1247 aa25.41■■□□□ 1.66
VPS28-209ENST00000528142 CLASRPQ8N2M8 674 aaKnown RBP25.41■■□□□ 1.66
VPS28-209ENST00000528142 ACSBG1Q96GR2 724 aa25.41■■□□□ 1.66
VPS28-209ENST00000528142 TUBGCP6Q96RT7 1819 aa25.4■■□□□ 1.66
VPS28-209ENST00000528142 G3BP1Q13283 466 aaKnown RBP eCLIP25.4■■□□□ 1.66
VPS28-209ENST00000528142 TCIRG1Q13488 830 aa25.4■■□□□ 1.66
VPS28-209ENST00000528142 TBC1D2Q9BYX2 928 aa25.4■■□□□ 1.66
VPS28-209ENST00000528142 COPRSQ9NQ92 184 aa25.4■■□□□ 1.66
VPS28-209ENST00000528142 KIF2CQ99661 725 aa25.4■■□□□ 1.66
VPS28-209ENST00000528142 FOXO4P98177 505 aa25.39■■□□□ 1.65
VPS28-209ENST00000528142 TRIM28Q13263 835 aaKnown RBP25.39■■□□□ 1.65
VPS28-209ENST00000528142 A0A0G2JS52 829 aa25.38■■□□□ 1.65
VPS28-209ENST00000528142 MYT1Q01538 1121 aa25.38■■□□□ 1.65
VPS28-209ENST00000528142 FAM182BQ5T319 152 aa25.38■■□□□ 1.65
VPS28-209ENST00000528142 KLHDC4Q8TBB5 520 aa25.38■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms