RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 FAM161AQ3B820 660 aa14.19□□□□□ -0.14
CPSF1-203ENST00000527916 PRPF40BQ6NWY9 871 aaKnown RBP14.19□□□□□ -0.14
CPSF1-203ENST00000527916 MASTLQ96GX5 879 aa14.19□□□□□ -0.14
CPSF1-203ENST00000527916 TEX13AQ9BXU3 409 aaPredicted RBP14.19□□□□□ -0.14
CPSF1-203ENST00000527916 ZNF330Q9Y3S2 320 aaPredicted RBP14.19□□□□□ -0.14
CPSF1-203ENST00000527916 PNMA8AQ86V59 439 aaPredicted RBP14.18□□□□□ -0.14
CPSF1-203ENST00000527916 CCDC24Q8N4L8 307 aa14.18□□□□□ -0.14
CPSF1-203ENST00000527916 HACL1Q9UJ83 578 aa14.18□□□□□ -0.14
CPSF1-203ENST00000527916 RASSF10A6NK89 507 aa14.17□□□□□ -0.14
CPSF1-203ENST00000527916 SRGNP10124 158 aa14.17□□□□□ -0.14
CPSF1-203ENST00000527916 HSPA8P11142 646 aaKnown RBP14.17□□□□□ -0.14
CPSF1-203ENST00000527916 PCDH10Q9P2E7 1040 aa14.17□□□□□ -0.14
CPSF1-203ENST00000527916 TBC1D2BQ9UPU7 963 aa14.17□□□□□ -0.14
CPSF1-203ENST00000527916 VIRMAQ69YN4 1812 aaKnown RBP14.17□□□□□ -0.14
CPSF1-203ENST00000527916 SLX4Q8IY92 1834 aa14.17□□□□□ -0.14
CPSF1-203ENST00000527916 COL11A2P13942 1736 aaPredicted RBP14.16□□□□□ -0.14
CPSF1-203ENST00000527916 EPHX2P34913 555 aa14.16□□□□□ -0.14
CPSF1-203ENST00000527916 IL6STP40189 918 aaPredicted RBP14.16□□□□□ -0.14
CPSF1-203ENST00000527916 MLLT1Q03111 559 aaPredicted RBP14.16□□□□□ -0.14
CPSF1-203ENST00000527916 CCDC93Q567U6 631 aa14.16□□□□□ -0.14
CPSF1-203ENST00000527916 CC2D1BQ5T0F9 858 aaKnown RBP14.16□□□□□ -0.14
CPSF1-203ENST00000527916 BEGAINQ9BUH8 593 aa14.16□□□□□ -0.14
CPSF1-203ENST00000527916 WDR33Q9C0J8 1336 aaKnown RBP14.15□□□□□ -0.14
CPSF1-203ENST00000527916 CNTROBQ8N137 903 aa14.15□□□□□ -0.14
CPSF1-203ENST00000527916 ABT1Q9ULW3 272 aaKnown RBP14.15□□□□□ -0.14
CPSF1-203ENST00000527916 CCDC85CA6NKD9 419 aa14.14□□□□□ -0.15
CPSF1-203ENST00000527916 DIAPH1O60610 1272 aaKnown RBP14.14□□□□□ -0.15
CPSF1-203ENST00000527916 HMOX1P09601 288 aa14.14□□□□□ -0.15
CPSF1-203ENST00000527916 FKBP4Q02790 459 aaKnown RBP eCLIP14.14□□□□□ -0.15
CPSF1-203ENST00000527916 MTHFSDQ2M296 383 aaKnown RBP14.14□□□□□ -0.15
CPSF1-203ENST00000527916 CACNA1SQ13698 1873 aa14.14□□□□□ -0.15
CPSF1-203ENST00000527916 UBR2Q8IWV8 1755 aa14.14□□□□□ -0.15
CPSF1-203ENST00000527916 SCN7AQ01118 1682 aa14.14□□□□□ -0.15
CPSF1-203ENST00000527916 NPR1P16066 1061 aa14.13□□□□□ -0.15
CPSF1-203ENST00000527916 TEFQ10587 303 aa14.13□□□□□ -0.15
CPSF1-203ENST00000527916 MAP1SQ66K74 1059 aaPredicted RBP14.13□□□□□ -0.15
CPSF1-203ENST00000527916 NBPF5PQ86XG9 351 aaPredicted RBP14.13□□□□□ -0.15
CPSF1-203ENST00000527916 RTKN2Q8IZC4 609 aa14.13□□□□□ -0.15
CPSF1-203ENST00000527916 ZNF496Q96IT1 587 aaPredicted RBP14.13□□□□□ -0.15
CPSF1-203ENST00000527916 ARFGEF2Q9Y6D5 1785 aa14.13□□□□□ -0.15
CPSF1-203ENST00000527916 HEG1Q9ULI3 1381 aa14.12□□□□□ -0.15
CPSF1-203ENST00000527916 ECE1P42892 770 aa14.12□□□□□ -0.15
CPSF1-203ENST00000527916 ZNF790Q6PG37 636 aa14.12□□□□□ -0.15
CPSF1-203ENST00000527916 C7orf43Q8WVR3 580 aa14.12□□□□□ -0.15
CPSF1-203ENST00000527916 ZNF277Q9NRM2 450 aaPredicted RBP14.12□□□□□ -0.15
CPSF1-203ENST00000527916 ZNF541Q9H0D2 1346 aa14.12□□□□□ -0.15
CPSF1-203ENST00000527916 CAMTA2O94983 1202 aa14.11□□□□□ -0.15
CPSF1-203ENST00000527916 RGS19P49795 217 aa14.11□□□□□ -0.15
CPSF1-203ENST00000527916 PAXIP1Q6ZW49 1069 aaPredicted RBP14.11□□□□□ -0.15
CPSF1-203ENST00000527916 DZIP3Q86Y13 1208 aaKnown RBP14.11□□□□□ -0.15
CPSF1-203ENST00000527916 GPC2Q8N158 579 aa14.11□□□□□ -0.15
CPSF1-203ENST00000527916 FMNL2Q96PY5 1086 aa14.11□□□□□ -0.15
CPSF1-203ENST00000527916 ZNF652Q9Y2D9 606 aa14.11□□□□□ -0.15
CPSF1-203ENST00000527916 RNF123Q5XPI4 1314 aa14.11□□□□□ -0.15
CPSF1-203ENST00000527916 CLEC4GQ6UXB4 293 aa14.1□□□□□ -0.15
CPSF1-203ENST00000527916 JDP2Q8WYK2 163 aa14.1□□□□□ -0.15
CPSF1-203ENST00000527916 DDX21Q9NR30 783 aaKnown RBP eCLIP14.1□□□□□ -0.15
CPSF1-203ENST00000527916 FZD9O00144 591 aa14.09□□□□□ -0.15
CPSF1-203ENST00000527916 A1BGP04217 495 aa14.09□□□□□ -0.15
CPSF1-203ENST00000527916 LMOD1P29536 600 aaPredicted RBP14.09□□□□□ -0.15
CPSF1-203ENST00000527916 IARSP41252 1262 aaKnown RBP14.09□□□□□ -0.15
CPSF1-203ENST00000527916 TPTE2Q6XPS3 522 aa14.09□□□□□ -0.15
CPSF1-203ENST00000527916 CAPNS2Q96L46 248 aa14.09□□□□□ -0.15
CPSF1-203ENST00000527916 GPR101Q96P66 508 aaPredicted RBP14.09□□□□□ -0.15
CPSF1-203ENST00000527916 COL3A1P02461 1466 aaPredicted RBP14.09□□□□□ -0.15
CPSF1-203ENST00000527916 ADAMTSL1Q8N6G6 1762 aa14.09□□□□□ -0.15
CPSF1-203ENST00000527916 PDE4DIPQ5VU43 2346 aa14.08□□□□□ -0.16
CPSF1-203ENST00000527916 GNAT3A8MTJ3 354 aa14.08□□□□□ -0.16
CPSF1-203ENST00000527916 ALDH1B1P30837 517 aa14.08□□□□□ -0.16
CPSF1-203ENST00000527916 KLRG2A4D1S0 409 aaPredicted RBP14.07□□□□□ -0.16
CPSF1-203ENST00000527916 EIF6P56537 245 aaKnown RBP14.07□□□□□ -0.16
CPSF1-203ENST00000527916 GRM1Q13255 1194 aa14.07□□□□□ -0.16
CPSF1-203ENST00000527916 SYNE4Q8N205 404 aa14.07□□□□□ -0.16
CPSF1-203ENST00000527916 GAS2L2Q8NHY3 880 aa14.07□□□□□ -0.16
CPSF1-203ENST00000527916 CA12O43570 354 aa14.06□□□□□ -0.16
CPSF1-203ENST00000527916 IL17REQ8NFR9 667 aa14.06□□□□□ -0.16
CPSF1-203ENST00000527916 CFAP53Q96M91 514 aa14.06□□□□□ -0.16
CPSF1-203ENST00000527916 CFAP44Q96MT7 982 aa14.06□□□□□ -0.16
CPSF1-203ENST00000527916 GJA3Q9Y6H8 435 aa14.06□□□□□ -0.16
CPSF1-203ENST00000527916 RGL2O15211 777 aa14.05□□□□□ -0.16
CPSF1-203ENST00000527916 GTF2E1P29083 439 aaPredicted RBP14.05□□□□□ -0.16
CPSF1-203ENST00000527916 MAP2K2P36507 400 aa14.05□□□□□ -0.16
CPSF1-203ENST00000527916 CC2D2BQ6DHV5 1058 aa14.05□□□□□ -0.16
CPSF1-203ENST00000527916 CYP4F22Q6NT55 531 aa14.05□□□□□ -0.16
CPSF1-203ENST00000527916 OLFM4Q6UX06 510 aa14.05□□□□□ -0.16
CPSF1-203ENST00000527916 PSMD1Q99460 953 aa14.05□□□□□ -0.16
CPSF1-203ENST00000527916 BCORQ6W2J9 1755 aa14.04□□□□□ -0.16
CPSF1-203ENST00000527916 BTBD11A6QL63 1104 aa14.04□□□□□ -0.16
CPSF1-203ENST00000527916 U2SURPO15042 1029 aaKnown RBP14.04□□□□□ -0.16
CPSF1-203ENST00000527916 CNGB1Q14028 1251 aaPredicted RBP14.04□□□□□ -0.16
CPSF1-203ENST00000527916 GRIPAP1Q4V328 841 aa14.04□□□□□ -0.16
CPSF1-203ENST00000527916 NIP7Q9Y221 180 aaKnown RBP eCLIP14.04□□□□□ -0.16
CPSF1-203ENST00000527916 NUDCQ9Y266 331 aa14.04□□□□□ -0.16
CPSF1-203ENST00000527916 TNRC18O15417 2968 aaPredicted RBP14.03□□□□□ -0.16
CPSF1-203ENST00000527916 PPP2R1AP30153 589 aa14.03□□□□□ -0.16
CPSF1-203ENST00000527916 USP50Q70EL3 339 aaPredicted RBP14.03□□□□□ -0.16
CPSF1-203ENST00000527916 THSD7BQ9C0I4 1608 aa14.03□□□□□ -0.16
CPSF1-203ENST00000527916 TRPM7Q96QT4 1865 aa14.02□□□□□ -0.16
CPSF1-203ENST00000527916 USP16Q9Y5T5 823 aa14.02□□□□□ -0.17
CPSF1-203ENST00000527916 TLL2Q9Y6L7 1015 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms