RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 TJP1Q07157 1748 aa23.63■■□□□ 1.37
VPS28-207ENST00000526977 IL6STP40189 918 aaPredicted RBP23.62■■□□□ 1.37
VPS28-207ENST00000526977 NEXNQ0ZGT2 675 aa23.61■■□□□ 1.37
VPS28-207ENST00000526977 NPM2Q86SE8 214 aaKnown RBP23.61■■□□□ 1.37
VPS28-207ENST00000526977 CCDC87Q9NVE4 849 aa23.61■■□□□ 1.37
VPS28-207ENST00000526977 ALDH1L1O75891 902 aa23.6■■□□□ 1.37
VPS28-207ENST00000526977 TRIM37O94972 964 aa23.6■■□□□ 1.37
VPS28-207ENST00000526977 CRKLP46109 303 aaKnown RBP23.6■■□□□ 1.37
VPS28-207ENST00000526977 LINS1Q8NG48 757 aa23.6■■□□□ 1.37
VPS28-207ENST00000526977 METTL22Q9BUU2 404 aaPredicted RBP23.6■■□□□ 1.37
VPS28-207ENST00000526977 ZBTB1Q9Y2K1 713 aa23.6■■□□□ 1.37
VPS28-207ENST00000526977 INTS5Q6P9B9 1019 aaKnown RBP23.6■■□□□ 1.37
VPS28-207ENST00000526977 SIRT2Q8IXJ6 389 aa23.6■■□□□ 1.37
VPS28-207ENST00000526977 GNAI3P08754 354 aa23.59■■□□□ 1.37
VPS28-207ENST00000526977 IPO9Q96P70 1041 aaKnown RBP23.59■■□□□ 1.37
VPS28-207ENST00000526977 TTLL7Q6ZT98 887 aa23.59■■□□□ 1.37
VPS28-207ENST00000526977 CCNL1Q9UK58 526 aaPredicted RBP23.59■■□□□ 1.37
VPS28-207ENST00000526977 MEIS3Q99687 375 aa23.58■■□□□ 1.37
VPS28-207ENST00000526977 ZNF330Q9Y3S2 320 aaPredicted RBP23.58■■□□□ 1.37
VPS28-207ENST00000526977 KIF6Q6ZMV9 814 aa23.57■■□□□ 1.36
VPS28-207ENST00000526977 ILDR1Q86SU0 546 aaPredicted RBP23.57■■□□□ 1.36
VPS28-207ENST00000526977 IBTKQ9P2D0 1353 aaPredicted RBP23.57■■□□□ 1.36
VPS28-207ENST00000526977 HMGB2P26583 209 aaKnown RBP23.57■■□□□ 1.36
VPS28-207ENST00000526977 EIF5P55010 431 aaKnown RBP23.57■■□□□ 1.36
VPS28-207ENST00000526977 NUCB1Q02818 461 aa23.57■■□□□ 1.36
VPS28-207ENST00000526977 RC3H1Q5TC82 1133 aaKnown RBP23.56■■□□□ 1.36
VPS28-207ENST00000526977 USP44Q9H0E7 712 aa23.56■■□□□ 1.36
VPS28-207ENST00000526977 N4BP2Q86UW6 1770 aaPredicted RBP23.56■■□□□ 1.36
VPS28-207ENST00000526977 CNTNAP4Q9C0A0 1308 aa23.56■■□□□ 1.36
VPS28-207ENST00000526977 LINC00116Q8NCU8 138 aa23.55■■□□□ 1.36
VPS28-207ENST00000526977 MYD88Q99836 296 aa23.55■■□□□ 1.36
VPS28-207ENST00000526977 GCC1Q96CN9 775 aa23.54■■□□□ 1.36
VPS28-207ENST00000526977 GNAI2P04899 355 aa23.54■■□□□ 1.36
VPS28-207ENST00000526977 IGKV5-2P06315 115 aa23.54■■□□□ 1.36
VPS28-207ENST00000526977 SLC27A3Q5K4L6 730 aa23.54■■□□□ 1.36
VPS28-207ENST00000526977 HDAC5Q9UQL6 1122 aa23.54■■□□□ 1.36
VPS28-207ENST00000526977 LY75O60449 1722 aa23.53■■□□□ 1.36
VPS28-207ENST00000526977 MAP3K15Q6ZN16 1313 aa23.53■■□□□ 1.36
VPS28-207ENST00000526977 CWF19L2Q2TBE0 894 aaKnown RBP23.53■■□□□ 1.36
VPS28-207ENST00000526977 ARXQ96QS3 562 aa23.53■■□□□ 1.36
VPS28-207ENST00000526977 ANP32EQ9BTT0 268 aa23.53■■□□□ 1.36
VPS28-207ENST00000526977 ZBTB3Q9H5J0 574 aa23.53■■□□□ 1.36
VPS28-207ENST00000526977 NEURL1BA8MQ27 555 aa23.52■■□□□ 1.36
VPS28-207ENST00000526977 UBTFL1P0CB47 393 aaPredicted RBP23.52■■□□□ 1.36
VPS28-207ENST00000526977 KCNQ4P56696 695 aa23.52■■□□□ 1.36
VPS28-207ENST00000526977 RPAP2Q8IXW5 612 aaPredicted RBP23.52■■□□□ 1.36
VPS28-207ENST00000526977 C9orf78Q9NZ63 289 aaPredicted RBP23.52■■□□□ 1.36
VPS28-207ENST00000526977 COL5A3P25940 1745 aaPredicted RBP23.52■■□□□ 1.36
VPS28-207ENST00000526977 RREB1Q92766 1687 aa23.52■■□□□ 1.36
VPS28-207ENST00000526977 ERVV-1B6SEH8 477 aa23.52■■□□□ 1.36
VPS28-207ENST00000526977 PLSCR1O15162 318 aa23.52■■□□□ 1.36
VPS28-207ENST00000526977 CHD1LQ86WJ1 897 aa23.52■■□□□ 1.36
VPS28-207ENST00000526977 EP400Q96L91 3159 aa23.51■■□□□ 1.35
VPS28-207ENST00000526977 DZIP3Q86Y13 1208 aaKnown RBP23.51■■□□□ 1.35
VPS28-207ENST00000526977 A0A087WZG4 1122 aa23.5■■□□□ 1.35
VPS28-207ENST00000526977 TCIRG1Q13488 830 aa23.5■■□□□ 1.35
VPS28-207ENST00000526977 GCKRQ14397 625 aa23.5■■□□□ 1.35
VPS28-207ENST00000526977 GIGYF2Q6Y7W6 1299 aaKnown RBP23.5■■□□□ 1.35
VPS28-207ENST00000526977 ANKRD44Q8N8A2 993 aa23.5■■□□□ 1.35
VPS28-207ENST00000526977 HSP90AB3PQ58FF7 597 aa23.49■■□□□ 1.35
VPS28-207ENST00000526977 ANKRD45Q5TZF3 282 aa23.49■■□□□ 1.35
VPS28-207ENST00000526977 LNPKQ9C0E8 428 aa23.49■■□□□ 1.35
VPS28-207ENST00000526977 UTYO14607 1347 aa23.49■■□□□ 1.35
VPS28-207ENST00000526977 ARFGEF2Q9Y6D5 1785 aa23.49■■□□□ 1.35
VPS28-207ENST00000526977 GRM8O00222 908 aa23.49■■□□□ 1.35
VPS28-207ENST00000526977 APBA3O96018 575 aa23.49■■□□□ 1.35
VPS28-207ENST00000526977 NBPF7P0C2Y1 421 aaPredicted RBP23.49■■□□□ 1.35
VPS28-207ENST00000526977 MYH14Q7Z406 1995 aaKnown RBP23.48■■□□□ 1.35
VPS28-207ENST00000526977 RPS6KA4O75676 772 aa23.48■■□□□ 1.35
VPS28-207ENST00000526977 TRIM28Q13263 835 aaKnown RBP23.48■■□□□ 1.35
VPS28-207ENST00000526977 TBC1D2BQ9UPU7 963 aa23.48■■□□□ 1.35
VPS28-207ENST00000526977 ATP5J2-PTCD1G3V325 749 aa23.47■■□□□ 1.35
VPS28-207ENST00000526977 SEC24BO95487 1268 aa23.47■■□□□ 1.35
VPS28-207ENST00000526977 CCDC191Q8NCU4 936 aa23.47■■□□□ 1.35
VPS28-207ENST00000526977 LRRC4BQ9NT99 713 aa23.47■■□□□ 1.35
VPS28-207ENST00000526977 CEP85Q6P2H3 762 aa23.47■■□□□ 1.35
VPS28-207ENST00000526977 DCTPP1Q9H773 170 aa23.47■■□□□ 1.35
VPS28-207ENST00000526977 NOP58Q9Y2X3 529 aaKnown RBP23.47■■□□□ 1.35
VPS28-207ENST00000526977 ISCA1Q9BUE6 129 aa23.46■■□□□ 1.35
VPS28-207ENST00000526977 ZBTB47Q9UFB7 747 aaPredicted RBP23.46■■□□□ 1.35
VPS28-207ENST00000526977 NUP188Q5SRE5 1749 aa23.46■■□□□ 1.35
VPS28-207ENST00000526977 COL15A1P39059 1388 aa23.46■■□□□ 1.35
VPS28-207ENST00000526977 TXNRD1Q16881 649 aa23.45■■□□□ 1.35
VPS28-207ENST00000526977 CWC25Q9NXE8 425 aaPredicted RBP23.45■■□□□ 1.35
VPS28-207ENST00000526977 RTCBQ9Y3I0 505 aaKnown RBP23.45■■□□□ 1.35
VPS28-207ENST00000526977 LRRFIP2Q9Y608 721 aaKnown RBP23.45■■□□□ 1.35
VPS28-207ENST00000526977 GNPATO15228 680 aa23.44■■□□□ 1.34
VPS28-207ENST00000526977 HMMRO75330 724 aa23.44■■□□□ 1.34
VPS28-207ENST00000526977 HLFQ16534 295 aa23.44■■□□□ 1.34
VPS28-207ENST00000526977 RGL2O15211 777 aa23.43■■□□□ 1.34
VPS28-207ENST00000526977 ATP8B2P98198 1209 aa23.43■■□□□ 1.34
VPS28-207ENST00000526977 PROM2Q8N271 834 aa23.43■■□□□ 1.34
VPS28-207ENST00000526977 AK7Q96M32 723 aa23.43■■□□□ 1.34
VPS28-207ENST00000526977 TAF1LQ8IZX4 1826 aa23.42■■□□□ 1.34
VPS28-207ENST00000526977 CAMTA2O94983 1202 aa23.42■■□□□ 1.34
VPS28-207ENST00000526977 CLEC4GQ6UXB4 293 aa23.42■■□□□ 1.34
VPS28-207ENST00000526977 ERICH6Q7L0X2 663 aa23.42■■□□□ 1.34
VPS28-207ENST00000526977 ZNF652Q9Y2D9 606 aa23.42■■□□□ 1.34
VPS28-207ENST00000526977 H7C1W4 665 aa23.41■■□□□ 1.34
VPS28-207ENST00000526977 C4BP0C0L5 1744 aa23.4■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 157.4 ms