RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 CRYBG1Q9Y4K1 1723 aa25.66■■□□□ 1.7
VPS28-205ENST00000526204 CWF19L2Q2TBE0 894 aaKnown RBP25.65■■□□□ 1.7
VPS28-205ENST00000526204 CWC27Q6UX04 472 aaKnown RBP25.65■■□□□ 1.7
VPS28-205ENST00000526204 KIF1AQ12756 1690 aa25.65■■□□□ 1.7
VPS28-205ENST00000526204 ADAMTS7Q9UKP4 1686 aa25.65■■□□□ 1.7
VPS28-205ENST00000526204 C1orf167Q5SNV9 1468 aa25.65■■□□□ 1.7
VPS28-205ENST00000526204 RAPGEF4Q8WZA2 1011 aa25.64■■□□□ 1.7
VPS28-205ENST00000526204 C19orf44Q9H6X5 657 aa25.64■■□□□ 1.7
VPS28-205ENST00000526204 WDR33Q9C0J8 1336 aaKnown RBP25.64■■□□□ 1.7
VPS28-205ENST00000526204 PRAMEF22A3QJZ6 481 aa25.63■■□□□ 1.69
VPS28-205ENST00000526204 TTC14Q96N46 770 aa25.63■■□□□ 1.69
VPS28-205ENST00000526204 SIPA1L3O60292 1781 aaPredicted RBP25.63■■□□□ 1.69
VPS28-205ENST00000526204 FOXD4L5Q5VV16 416 aaPredicted RBP25.63■■□□□ 1.69
VPS28-205ENST00000526204 FOXD4L4Q8WXT5 416 aaPredicted RBP25.63■■□□□ 1.69
VPS28-205ENST00000526204 EVI5LQ96CN4 794 aa25.63■■□□□ 1.69
VPS28-205ENST00000526204 ZNF790Q6PG37 636 aa25.62■■□□□ 1.69
VPS28-205ENST00000526204 PDIA6Q15084 440 aa25.61■■□□□ 1.69
VPS28-205ENST00000526204 LARP1Q6PKG0 1096 aaKnown RBP25.61■■□□□ 1.69
VPS28-205ENST00000526204 SLC52A2Q9HAB3 445 aa25.61■■□□□ 1.69
VPS28-205ENST00000526204 LIMCH1Q9UPQ0 1083 aa25.61■■□□□ 1.69
VPS28-205ENST00000526204 PA2G4Q9UQ80 394 aaKnown RBP25.61■■□□□ 1.69
VPS28-205ENST00000526204 G3BP1Q13283 466 aaKnown RBP eCLIP25.6■■□□□ 1.69
VPS28-205ENST00000526204 SUCLG2Q96I99 432 aa25.6■■□□□ 1.69
VPS28-205ENST00000526204 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.6■■□□□ 1.69
VPS28-205ENST00000526204 SPG7Q9UQ90 795 aa25.6■■□□□ 1.69
VPS28-205ENST00000526204 RASEFQ8IZ41 740 aa25.6■■□□□ 1.69
VPS28-205ENST00000526204 HIP1O00291 1037 aa25.59■■□□□ 1.69
VPS28-205ENST00000526204 ZC3H6P61129 1189 aaKnown RBP25.59■■□□□ 1.69
VPS28-205ENST00000526204 NEXNQ0ZGT2 675 aa25.59■■□□□ 1.69
VPS28-205ENST00000526204 LRSAM1Q6UWE0 723 aa25.59■■□□□ 1.69
VPS28-205ENST00000526204 RIC3Q7Z5B4 369 aa25.59■■□□□ 1.69
VPS28-205ENST00000526204 AACSQ86V21 672 aa25.59■■□□□ 1.69
VPS28-205ENST00000526204 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.59■■□□□ 1.69
VPS28-205ENST00000526204 ZSCAN21Q9Y5A6 473 aaPredicted RBP25.59■■□□□ 1.69
VPS28-205ENST00000526204 NPHP3Q7Z494 1330 aa25.59■■□□□ 1.69
VPS28-205ENST00000526204 TATP17735 454 aaPredicted RBP25.58■■□□□ 1.69
VPS28-205ENST00000526204 PRIM1P49642 420 aaKnown RBP25.58■■□□□ 1.69
VPS28-205ENST00000526204 AIMP1Q12904 312 aaKnown RBP25.58■■□□□ 1.69
VPS28-205ENST00000526204 KAZALD1Q96I82 304 aa25.58■■□□□ 1.69
VPS28-205ENST00000526204 BICC1Q9H694 974 aaKnown RBP25.58■■□□□ 1.69
VPS28-205ENST00000526204 TMEM63CQ9P1W3 806 aa25.58■■□□□ 1.69
VPS28-205ENST00000526204 RBM27Q9P2N5 1060 aaKnown RBP25.58■■□□□ 1.69
VPS28-205ENST00000526204 CHAMP1Q96JM3 812 aa25.58■■□□□ 1.69
VPS28-205ENST00000526204 PLEKHG2Q9H7P9 1386 aa25.58■■□□□ 1.68
VPS28-205ENST00000526204 AK2P54819 239 aa25.57■■□□□ 1.68
VPS28-205ENST00000526204 SYAP1Q96A49 352 aaPredicted RBP25.57■■□□□ 1.68
VPS28-205ENST00000526204 NLRP2Q9NX02 1062 aa25.57■■□□□ 1.68
VPS28-205ENST00000526204 KCNB2Q92953 911 aa25.57■■□□□ 1.68
VPS28-205ENST00000526204 TM6SF1Q9BZW5 370 aa25.57■■□□□ 1.68
VPS28-205ENST00000526204 RBSNQ9H1K0 784 aa25.57■■□□□ 1.68
VPS28-205ENST00000526204 PHKG2P15735 406 aa25.56■■□□□ 1.68
VPS28-205ENST00000526204 SASH1O94885 1247 aa25.55■■□□□ 1.68
VPS28-205ENST00000526204 ERBB4Q15303 1308 aa25.55■■□□□ 1.68
VPS28-205ENST00000526204 IGKV5-2P06315 115 aa25.55■■□□□ 1.68
VPS28-205ENST00000526204 RUFY3Q7L099 469 aa25.55■■□□□ 1.68
VPS28-205ENST00000526204 CASTP20810 708 aaKnown RBP25.54■■□□□ 1.68
VPS28-205ENST00000526204 VPS53Q5VIR6 699 aa25.54■■□□□ 1.68
VPS28-205ENST00000526204 NSFL1CQ9UNZ2 370 aaKnown RBP25.54■■□□□ 1.68
VPS28-205ENST00000526204 ALS2Q96Q42 1657 aa25.54■■□□□ 1.68
VPS28-205ENST00000526204 KDM6AO15550 1401 aaPredicted RBP25.54■■□□□ 1.68
VPS28-205ENST00000526204 SLC39A6Q13433 755 aa25.54■■□□□ 1.68
VPS28-205ENST00000526204 IFNL2Q8IZJ0 200 aa25.54■■□□□ 1.68
VPS28-205ENST00000526204 ABCC6O95255 1503 aa25.53■■□□□ 1.68
VPS28-205ENST00000526204 NEURL1BA8MQ27 555 aa25.53■■□□□ 1.68
VPS28-205ENST00000526204 HS1BP3Q53T59 392 aa25.53■■□□□ 1.68
VPS28-205ENST00000526204 NFATC2IPQ8NCF5 419 aa25.53■■□□□ 1.68
VPS28-205ENST00000526204 EAF2Q96CJ1 260 aaPredicted RBP25.53■■□□□ 1.68
VPS28-205ENST00000526204 ZSCAN31Q96LW9 406 aaPredicted RBP25.53■■□□□ 1.68
VPS28-205ENST00000526204 SYCE3A1L190 88 aa25.52■■□□□ 1.68
VPS28-205ENST00000526204 ZKSCAN1P17029 563 aaPredicted RBP25.52■■□□□ 1.68
VPS28-205ENST00000526204 PTH1RQ03431 593 aa25.52■■□□□ 1.68
VPS28-205ENST00000526204 GCKRQ14397 625 aa25.52■■□□□ 1.68
VPS28-205ENST00000526204 METTL22Q9BUU2 404 aaPredicted RBP25.52■■□□□ 1.68
VPS28-205ENST00000526204 ATF3P18847 181 aa25.52■■□□□ 1.68
VPS28-205ENST00000526204 ZSWIM6Q9HCJ5 1215 aa25.52■■□□□ 1.68
VPS28-205ENST00000526204 SH2B1Q9NRF2 756 aaPredicted RBP25.52■■□□□ 1.68
VPS28-205ENST00000526204 CYP46A1Q9Y6A2 500 aa25.52■■□□□ 1.68
VPS28-205ENST00000526204 RPAP1Q9BWH6 1393 aaPredicted RBP25.51■■□□□ 1.68
VPS28-205ENST00000526204 CCDC171Q6TFL3 1326 aa25.51■■□□□ 1.67
VPS28-205ENST00000526204 PHF14O94880 888 aa25.51■■□□□ 1.67
VPS28-205ENST00000526204 NECTIN1Q15223 517 aa25.51■■□□□ 1.67
VPS28-205ENST00000526204 TMEM87AQ8NBN3 555 aa25.51■■□□□ 1.67
VPS28-205ENST00000526204 XAGE3Q8WTP9 111 aa25.51■■□□□ 1.67
VPS28-205ENST00000526204 SNRKQ9NRH2 765 aa25.51■■□□□ 1.67
VPS28-205ENST00000526204 SMC3Q9UQE7 1217 aa25.51■■□□□ 1.67
VPS28-205ENST00000526204 ZSCAN22P10073 491 aaPredicted RBP25.51■■□□□ 1.67
VPS28-205ENST00000526204 MYL6BP14649 208 aa25.51■■□□□ 1.67
VPS28-205ENST00000526204 PRPF40BQ6NWY9 871 aaKnown RBP25.51■■□□□ 1.67
VPS28-205ENST00000526204 DCAF5Q96JK2 942 aa25.51■■□□□ 1.67
VPS28-205ENST00000526204 PDRG1Q9NUG6 133 aa25.51■■□□□ 1.67
VPS28-205ENST00000526204 ATP6V1DQ9Y5K8 247 aa25.51■■□□□ 1.67
VPS28-205ENST00000526204 SNRPA1P09661 255 aaKnown RBP25.5■■□□□ 1.67
VPS28-205ENST00000526204 COPS6Q7L5N1 327 aa25.5■■□□□ 1.67
VPS28-205ENST00000526204 ZSCAN30Q86W11 494 aa25.5■■□□□ 1.67
VPS28-205ENST00000526204 JAKMIP1Q96N16 626 aaKnown RBP25.5■■□□□ 1.67
VPS28-205ENST00000526204 RGPD5Q99666 1765 aa25.5■■□□□ 1.67
VPS28-205ENST00000526204 PDLIM2Q96JY6 352 aa25.49■■□□□ 1.67
VPS28-205ENST00000526204 SCN11AQ9UI33 1791 aa25.49■■□□□ 1.67
VPS28-205ENST00000526204 STX6O43752 255 aa25.49■■□□□ 1.67
VPS28-205ENST00000526204 USP48Q86UV5 1035 aa25.49■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms