RNA–Protein interactions for RNA: ENST00000524330.1

VPS13B-212, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 5

Gene VPS13B, Length 218 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-212ENST00000524330 ITGB4P16144 1822 aa12.31□□□□□ -0.44
VPS13B-212ENST00000524330 TOGARAM1Q9Y4F4 1720 aa12.31□□□□□ -0.44
VPS13B-212ENST00000524330 NBPF7P0C2Y1 421 aaPredicted RBP12.3□□□□□ -0.44
VPS13B-212ENST00000524330 HMGB2P26583 209 aaKnown RBP12.3□□□□□ -0.44
VPS13B-212ENST00000524330 PRIM1P49642 420 aaKnown RBP12.3□□□□□ -0.44
VPS13B-212ENST00000524330 GPATCH3Q96I76 525 aa12.3□□□□□ -0.44
VPS13B-212ENST00000524330 CWC25Q9NXE8 425 aaPredicted RBP12.3□□□□□ -0.44
VPS13B-212ENST00000524330 ASAP1Q9ULH1 1129 aa12.3□□□□□ -0.44
VPS13B-212ENST00000524330 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.3□□□□□ -0.44
VPS13B-212ENST00000524330 COL15A1P39059 1388 aa12.3□□□□□ -0.44
VPS13B-212ENST00000524330 CDC45O75419 566 aa12.29□□□□□ -0.44
VPS13B-212ENST00000524330 G3BP1Q13283 466 aaKnown RBP eCLIP12.29□□□□□ -0.44
VPS13B-212ENST00000524330 CWF19L2Q2TBE0 894 aaKnown RBP12.29□□□□□ -0.44
VPS13B-212ENST00000524330 CCDC191Q8NCU4 936 aa12.29□□□□□ -0.44
VPS13B-212ENST00000524330 AOX1Q06278 1338 aa12.29□□□□□ -0.44
VPS13B-212ENST00000524330 PNMA6EA0A0J9YXQ4 647 aa12.28□□□□□ -0.44
VPS13B-212ENST00000524330 APBB1O00213 710 aa12.28□□□□□ -0.44
VPS13B-212ENST00000524330 A1BGP04217 495 aa12.28□□□□□ -0.44
VPS13B-212ENST00000524330 TTC22Q5TAA0 569 aa12.28□□□□□ -0.44
VPS13B-212ENST00000524330 LRP10Q7Z4F1 713 aa12.28□□□□□ -0.44
VPS13B-212ENST00000524330 PLEKHM2Q8IWE5 1019 aa12.28□□□□□ -0.44
VPS13B-212ENST00000524330 DNAJC10Q8IXB1 793 aa12.28□□□□□ -0.44
VPS13B-212ENST00000524330 OSBPL3Q9H4L5 887 aa12.28□□□□□ -0.44
VPS13B-212ENST00000524330 EXOC6BQ9Y2D4 811 aa12.28□□□□□ -0.44
VPS13B-212ENST00000524330 NOP58Q9Y2X3 529 aaKnown RBP12.28□□□□□ -0.44
VPS13B-212ENST00000524330 KAT6BQ8WYB5 2073 aa12.27□□□□□ -0.45
VPS13B-212ENST00000524330 A0A087WZG4 1122 aa12.27□□□□□ -0.45
VPS13B-212ENST00000524330 NBPF26B4DH59 902 aa12.27□□□□□ -0.45
VPS13B-212ENST00000524330 IGKV5-2P06315 115 aa12.27□□□□□ -0.45
VPS13B-212ENST00000524330 HSP90B1P14625 803 aaKnown RBP12.27□□□□□ -0.45
VPS13B-212ENST00000524330 IL6STP40189 918 aaPredicted RBP12.27□□□□□ -0.45
VPS13B-212ENST00000524330 BECN1Q14457 450 aa12.27□□□□□ -0.45
VPS13B-212ENST00000524330 FAM98CQ17RN3 349 aaKnown RBP12.27□□□□□ -0.45
VPS13B-212ENST00000524330 NBPF14Q5TI25 921 aa12.27□□□□□ -0.45
VPS13B-212ENST00000524330 NBPF10Q6P3W6 841 aaKnown RBP12.27□□□□□ -0.45
VPS13B-212ENST00000524330 CLASRPQ8N2M8 674 aaKnown RBP12.27□□□□□ -0.45
VPS13B-212ENST00000524330 NBPF15Q8N660 670 aa12.27□□□□□ -0.45
VPS13B-212ENST00000524330 MARCH10Q8NA82 808 aaPredicted RBP12.27□□□□□ -0.45
VPS13B-212ENST00000524330 TRPC5Q9UL62 973 aaPredicted RBP12.27□□□□□ -0.45
VPS13B-212ENST00000524330 DOT1LQ8TEK3 1739 aa12.27□□□□□ -0.45
VPS13B-212ENST00000524330 BCL9LQ86UU0 1499 aa12.27□□□□□ -0.45
VPS13B-212ENST00000524330 GLI3P10071 1580 aa12.26□□□□□ -0.45
VPS13B-212ENST00000524330 ARFGEF2Q9Y6D5 1785 aa12.26□□□□□ -0.45
VPS13B-212ENST00000524330 AFDNP55196 1824 aaKnown RBP12.26□□□□□ -0.45
VPS13B-212ENST00000524330 ERC2O15083 957 aa12.26□□□□□ -0.45
VPS13B-212ENST00000524330 TRIM28Q13263 835 aaKnown RBP12.26□□□□□ -0.45
VPS13B-212ENST00000524330 TCIRG1Q13488 830 aa12.26□□□□□ -0.45
VPS13B-212ENST00000524330 RHPN1Q8TCX5 695 aa12.26□□□□□ -0.45
VPS13B-212ENST00000524330 ARXQ96QS3 562 aa12.26□□□□□ -0.45
VPS13B-212ENST00000524330 ZNF330Q9Y3S2 320 aaPredicted RBP12.26□□□□□ -0.45
VPS13B-212ENST00000524330 ERVV-1B6SEH8 477 aa12.25□□□□□ -0.45
VPS13B-212ENST00000524330 CYP19A1P11511 503 aaPredicted RBP12.25□□□□□ -0.45
VPS13B-212ENST00000524330 MX1P20591 662 aa12.25□□□□□ -0.45
VPS13B-212ENST00000524330 HSPA1LP34931 641 aa12.25□□□□□ -0.45
VPS13B-212ENST00000524330 ATP6V1AP38606 617 aa12.25□□□□□ -0.45
VPS13B-212ENST00000524330 SUCLG2Q96I99 432 aa12.25□□□□□ -0.45
VPS13B-212ENST00000524330 MAP3K15Q6ZN16 1313 aa12.25□□□□□ -0.45
VPS13B-212ENST00000524330 ATP5J2-PTCD1G3V325 749 aa12.24□□□□□ -0.45
VPS13B-212ENST00000524330 SMARCA5O60264 1052 aaPredicted RBP12.24□□□□□ -0.45
VPS13B-212ENST00000524330 IFIT2P09913 472 aaKnown RBP12.24□□□□□ -0.45
VPS13B-212ENST00000524330 PIP4K2AP48426 406 aaPredicted RBP12.24□□□□□ -0.45
VPS13B-212ENST00000524330 PDE1AP54750 535 aa12.24□□□□□ -0.45
VPS13B-212ENST00000524330 TTLL7Q6ZT98 887 aa12.24□□□□□ -0.45
VPS13B-212ENST00000524330 UBE3BQ7Z3V4 1068 aa12.24□□□□□ -0.45
VPS13B-212ENST00000524330 ACSBG1Q96GR2 724 aa12.24□□□□□ -0.45
VPS13B-212ENST00000524330 BCL11AQ9H165 835 aa12.24□□□□□ -0.45
VPS13B-212ENST00000524330 ZBTB3Q9H5J0 574 aa12.24□□□□□ -0.45
VPS13B-212ENST00000524330 BICC1Q9H694 974 aaKnown RBP12.24□□□□□ -0.45
VPS13B-212ENST00000524330 CCDC87Q9NVE4 849 aa12.24□□□□□ -0.45
VPS13B-212ENST00000524330 STAP2Q9UGK3 403 aa12.24□□□□□ -0.45
VPS13B-212ENST00000524330 PALLDQ8WX93 1383 aa12.23□□□□□ -0.45
VPS13B-212ENST00000524330 AFF2P51816 1311 aa12.23□□□□□ -0.45
VPS13B-212ENST00000524330 TTC41PQ6P2S7 1318 aa12.23□□□□□ -0.45
VPS13B-212ENST00000524330 LOC102724428A0A0B4J2F2 783 aa12.23□□□□□ -0.45
VPS13B-212ENST00000524330 H7C1W4 665 aa12.23□□□□□ -0.45
VPS13B-212ENST00000524330 MFAP1P55081 439 aaKnown RBP12.23□□□□□ -0.45
VPS13B-212ENST00000524330 SIK1P57059 783 aa12.23□□□□□ -0.45
VPS13B-212ENST00000524330 GIGYF2Q6Y7W6 1299 aaKnown RBP12.23□□□□□ -0.45
VPS13B-212ENST00000524330 GJD4Q96KN9 370 aaPredicted RBP12.23□□□□□ -0.45
VPS13B-212ENST00000524330 ISCA1Q9BUE6 129 aa12.23□□□□□ -0.45
VPS13B-212ENST00000524330 REC8O95072 547 aa12.22□□□□□ -0.45
VPS13B-212ENST00000524330 RABL6Q3YEC7 729 aaPredicted RBP12.22□□□□□ -0.45
VPS13B-212ENST00000524330 C22orf23Q9BZE7 217 aa12.22□□□□□ -0.45
VPS13B-212ENST00000524330 COPRSQ9NQ92 184 aa12.22□□□□□ -0.45
VPS13B-212ENST00000524330 ZNF652Q9Y2D9 606 aa12.22□□□□□ -0.45
VPS13B-212ENST00000524330 NUP188Q5SRE5 1749 aa12.22□□□□□ -0.45
VPS13B-212ENST00000524330 TRIM6-TRIM34B2RNG4 842 aa12.21□□□□□ -0.45
VPS13B-212ENST00000524330 RGL2O15211 777 aa12.21□□□□□ -0.45
VPS13B-212ENST00000524330 GLRX3O76003 335 aaKnown RBP12.21□□□□□ -0.45
VPS13B-212ENST00000524330 PCCAP05165 728 aaPredicted RBP12.21□□□□□ -0.45
VPS13B-212ENST00000524330 DZIP3Q86Y13 1208 aaKnown RBP12.21□□□□□ -0.45
VPS13B-212ENST00000524330 C16orf71Q8IYS4 520 aaPredicted RBP12.21□□□□□ -0.45
VPS13B-212ENST00000524330 CNTROBQ8N137 903 aa12.21□□□□□ -0.45
VPS13B-212ENST00000524330 TBC1D32Q96NH3 1257 aa12.21□□□□□ -0.45
VPS13B-212ENST00000524330 FBXO3Q9UK99 471 aa12.21□□□□□ -0.45
VPS13B-212ENST00000524330 CHMP3Q9Y3E7 222 aa12.21□□□□□ -0.45
VPS13B-212ENST00000524330 CICQ96RK0 1608 aaPredicted RBP12.21□□□□□ -0.46
VPS13B-212ENST00000524330 PARP10Q53GL7 1025 aa12.2□□□□□ -0.46
VPS13B-212ENST00000524330 TBC1D9Q6ZT07 1266 aa12.2□□□□□ -0.46
VPS13B-212ENST00000524330 AK7Q96M32 723 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms