RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 GOLGA6L1Q8N7Z2 621 aa11.89□□□□□ -0.51
PDGFRB-207ENST00000520579 ZNF397Q8NF99 534 aaPredicted RBP11.89□□□□□ -0.51
PDGFRB-207ENST00000520579 SLC26A8Q96RN1 970 aa11.89□□□□□ -0.51
PDGFRB-207ENST00000520579 MRVI1Q9Y6F6 885 aa11.89□□□□□ -0.51
PDGFRB-207ENST00000520579 EIF2S2P20042 333 aaKnown RBP11.88□□□□□ -0.51
PDGFRB-207ENST00000520579 ANAPC15P60006 121 aa11.88□□□□□ -0.51
PDGFRB-207ENST00000520579 E2F4Q16254 413 aa11.88□□□□□ -0.51
PDGFRB-207ENST00000520579 ATP6V1DQ9Y5K8 247 aa11.88□□□□□ -0.51
PDGFRB-207ENST00000520579 CCDC69A6NI79 296 aa11.88□□□□□ -0.51
PDGFRB-207ENST00000520579 FOXO3O43524 673 aa11.88□□□□□ -0.51
PDGFRB-207ENST00000520579 FCHSD2O94868 740 aa11.88□□□□□ -0.51
PDGFRB-207ENST00000520579 ZNF75DP51815 510 aa11.88□□□□□ -0.51
PDGFRB-207ENST00000520579 ARHGAP29Q52LW3 1261 aa11.88□□□□□ -0.51
PDGFRB-207ENST00000520579 LRRC2Q9BYS8 371 aa11.88□□□□□ -0.51
PDGFRB-207ENST00000520579 PDRG1Q9NUG6 133 aa11.88□□□□□ -0.51
PDGFRB-207ENST00000520579 ABCC4O15439 1325 aa11.88□□□□□ -0.51
PDGFRB-207ENST00000520579 ITSN2Q9NZM3 1697 aa11.88□□□□□ -0.51
PDGFRB-207ENST00000520579 PPP2R5AQ15172 486 aa11.88□□□□□ -0.51
PDGFRB-207ENST00000520579 ADCK5Q3MIX3 580 aa11.88□□□□□ -0.51
PDGFRB-207ENST00000520579 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.88□□□□□ -0.51
PDGFRB-207ENST00000520579 GOLGA8FQ08AF8 430 aa11.87□□□□□ -0.51
PDGFRB-207ENST00000520579 GOLGA8DPQ0D2H9 430 aa11.87□□□□□ -0.51
PDGFRB-207ENST00000520579 KRBA2Q6ZNG9 492 aa11.87□□□□□ -0.51
PDGFRB-207ENST00000520579 A0A1W2PP64 1363 aa11.87□□□□□ -0.51
PDGFRB-207ENST00000520579 TCHHQ07283 1943 aa11.87□□□□□ -0.51
PDGFRB-207ENST00000520579 IBSPP21815 317 aaPredicted RBP11.87□□□□□ -0.51
PDGFRB-207ENST00000520579 KRT85P78386 507 aa11.87□□□□□ -0.51
PDGFRB-207ENST00000520579 CUL4AQ13619 759 aa11.87□□□□□ -0.51
PDGFRB-207ENST00000520579 LIMCH1Q9UPQ0 1083 aa11.87□□□□□ -0.51
PDGFRB-207ENST00000520579 COL9A3Q14050 684 aaPredicted RBP11.87□□□□□ -0.51
PDGFRB-207ENST00000520579 WAPLQ7Z5K2 1190 aa11.87□□□□□ -0.51
PDGFRB-207ENST00000520579 FTOQ9C0B1 505 aaKnown RBP eCLIP11.87□□□□□ -0.51
PDGFRB-207ENST00000520579 POLKQ9UBT6 870 aa11.87□□□□□ -0.51
PDGFRB-207ENST00000520579 NR1I2O75469 434 aa11.86□□□□□ -0.51
PDGFRB-207ENST00000520579 URI1O94763 535 aaPredicted RBP11.86□□□□□ -0.51
PDGFRB-207ENST00000520579 ZRSR1Q15695 479 aaKnown RBP11.86□□□□□ -0.51
PDGFRB-207ENST00000520579 LRCH2Q5VUJ6 765 aa11.86□□□□□ -0.51
PDGFRB-207ENST00000520579 MNS1Q8NEH6 495 aa11.86□□□□□ -0.51
PDGFRB-207ENST00000520579 SNX14Q9Y5W7 946 aa11.86□□□□□ -0.51
PDGFRB-207ENST00000520579 ANKRD36BQ8N2N9 1353 aa11.86□□□□□ -0.51
PDGFRB-207ENST00000520579 GNAI2P04899 355 aa11.86□□□□□ -0.51
PDGFRB-207ENST00000520579 LMAN1P49257 510 aa11.86□□□□□ -0.51
PDGFRB-207ENST00000520579 LTV1Q96GA3 475 aaPredicted RBP11.86□□□□□ -0.51
PDGFRB-207ENST00000520579 SIL1Q9H173 461 aa11.86□□□□□ -0.51
PDGFRB-207ENST00000520579 TSPYL4Q9UJ04 414 aa11.86□□□□□ -0.51
PDGFRB-207ENST00000520579 IQSEC2Q5JU85 1478 aa11.86□□□□□ -0.51
PDGFRB-207ENST00000520579 H3BQV1 296 aa11.86□□□□□ -0.51
PDGFRB-207ENST00000520579 CTIFO43310 598 aaKnown RBP11.86□□□□□ -0.51
PDGFRB-207ENST00000520579 BRPF1P55201 1214 aaPredicted RBP11.86□□□□□ -0.51
PDGFRB-207ENST00000520579 RBM6P78332 1123 aaKnown RBP11.86□□□□□ -0.51
PDGFRB-207ENST00000520579 IFFO2Q5TF58 517 aa11.86□□□□□ -0.51
PDGFRB-207ENST00000520579 ANXA1P04083 346 aa11.86□□□□□ -0.51
PDGFRB-207ENST00000520579 RAD51AP2Q09MP3 1159 aa11.86□□□□□ -0.51
PDGFRB-207ENST00000520579 MTMR6Q9Y217 621 aa11.86□□□□□ -0.51
PDGFRB-207ENST00000520579 EIF2AK4Q9P2K8 1649 aaKnown RBP11.85□□□□□ -0.51
PDGFRB-207ENST00000520579 TPM3P06753 285 aa11.85□□□□□ -0.51
PDGFRB-207ENST00000520579 ST5P78524 1137 aa11.85□□□□□ -0.51
PDGFRB-207ENST00000520579 DNAI1Q9UI46 699 aa11.85□□□□□ -0.51
PDGFRB-207ENST00000520579 CHD1O14646 1710 aa11.85□□□□□ -0.51
PDGFRB-207ENST00000520579 ABCC10Q5T3U5 1492 aa11.85□□□□□ -0.51
PDGFRB-207ENST00000520579 TEX35Q5T0J7 233 aa11.85□□□□□ -0.51
PDGFRB-207ENST00000520579 TTLL5Q6EMB2 1281 aa11.85□□□□□ -0.51
PDGFRB-207ENST00000520579 CCDC191Q8NCU4 936 aa11.85□□□□□ -0.51
PDGFRB-207ENST00000520579 CDK19Q9BWU1 502 aa11.85□□□□□ -0.51
PDGFRB-207ENST00000520579 PLEKHA4Q9H4M7 779 aa11.85□□□□□ -0.51
PDGFRB-207ENST00000520579 PRDM16Q9HAZ2 1276 aa11.85□□□□□ -0.51
PDGFRB-207ENST00000520579 TRAPPC8Q9Y2L5 1435 aa11.85□□□□□ -0.51
PDGFRB-207ENST00000520579 ZNF853P0CG23 659 aa11.85□□□□□ -0.51
PDGFRB-207ENST00000520579 STK31Q9BXU1 1019 aa11.85□□□□□ -0.51
PDGFRB-207ENST00000520579 IL16Q14005 1332 aa11.84□□□□□ -0.51
PDGFRB-207ENST00000520579 RPAP1Q9BWH6 1393 aaPredicted RBP11.84□□□□□ -0.51
PDGFRB-207ENST00000520579 HTATSF1O43719 755 aaKnown RBP11.84□□□□□ -0.51
PDGFRB-207ENST00000520579 SLU7O95391 586 aaKnown RBP11.84□□□□□ -0.51
PDGFRB-207ENST00000520579 CTR9Q6PD62 1173 aa11.84□□□□□ -0.51
PDGFRB-207ENST00000520579 C11orf57Q6ZUT1 292 aaPredicted RBP11.84□□□□□ -0.51
PDGFRB-207ENST00000520579 TMC6Q7Z403 805 aa11.84□□□□□ -0.51
PDGFRB-207ENST00000520579 INTS4Q96HW7 963 aaKnown RBP11.84□□□□□ -0.51
PDGFRB-207ENST00000520579 RAD50Q92878 1312 aa11.84□□□□□ -0.51
PDGFRB-207ENST00000520579 PHACTR2O75167 634 aa11.84□□□□□ -0.51
PDGFRB-207ENST00000520579 NBPF20Q3BBV1 942 aa11.84□□□□□ -0.51
PDGFRB-207ENST00000520579 UBXN4Q92575 508 aa11.84□□□□□ -0.51
PDGFRB-207ENST00000520579 ARHGAP45Q92619 1136 aa11.84□□□□□ -0.51
PDGFRB-207ENST00000520579 SUFUQ9UMX1 484 aa11.84□□□□□ -0.51
PDGFRB-207ENST00000520579 PAXBP1Q9Y5B6 917 aa11.84□□□□□ -0.51
PDGFRB-207ENST00000520579 CFAP74Q9C0B2 1584 aa11.83□□□□□ -0.51
PDGFRB-207ENST00000520579 CDC42BPAQ5VT25 1732 aa11.83□□□□□ -0.52
PDGFRB-207ENST00000520579 RAB11FIP3O75154 756 aa11.83□□□□□ -0.52
PDGFRB-207ENST00000520579 PTH1RQ03431 593 aa11.83□□□□□ -0.52
PDGFRB-207ENST00000520579 FAM69CQ0P6D2 419 aa11.83□□□□□ -0.52
PDGFRB-207ENST00000520579 SNW1Q13573 536 aaKnown RBP11.83□□□□□ -0.52
PDGFRB-207ENST00000520579 LARP1Q6PKG0 1096 aaKnown RBP11.83□□□□□ -0.52
PDGFRB-207ENST00000520579 AOPEPQ8N6M6 819 aa11.83□□□□□ -0.52
PDGFRB-207ENST00000520579 SGSM3Q96HU1 749 aa11.83□□□□□ -0.52
PDGFRB-207ENST00000520579 SRRTQ9BXP5 876 aaKnown RBP11.83□□□□□ -0.52
PDGFRB-207ENST00000520579 RABEP2Q9H5N1 569 aa11.83□□□□□ -0.52
PDGFRB-207ENST00000520579 RTL1A6NKG5 1358 aa11.83□□□□□ -0.52
PDGFRB-207ENST00000520579 KDM5AP29375 1690 aaKnown RBP11.83□□□□□ -0.52
PDGFRB-207ENST00000520579 JAK2O60674 1132 aa11.83□□□□□ -0.52
PDGFRB-207ENST00000520579 ME3Q16798 604 aa11.83□□□□□ -0.52
PDGFRB-207ENST00000520579 MORC2Q9Y6X9 1032 aaPredicted RBP11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms