RNA–Protein interactions for RNA: ENST00000515452.1

NR1I3-233, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 2 BASIC

Gene NR1I3, Length 1,093 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-233	ENST00000515452	BRCA1	P38398	1863 aa	Known RBP	10.3	□□□□□ -0.76
NR1I3-233	ENST00000515452	KCNQ3	O43525	872 aa		10.29	□□□□□ -0.76
NR1I3-233	ENST00000515452	NEFM	P07197	916 aa		10.29	□□□□□ -0.76
NR1I3-233	ENST00000515452	C4A	P0C0L4	1744 aa		10.29	□□□□□ -0.76
NR1I3-233	ENST00000515452	PASK	Q96RG2	1323 aa		10.29	□□□□□ -0.76
NR1I3-233	ENST00000515452	RTF1	Q92541	710 aa	Known RBP	10.28	□□□□□ -0.76
NR1I3-233	ENST00000515452	CFAP44	Q96MT7	982 aa		10.28	□□□□□ -0.76
NR1I3-233	ENST00000515452	HTATSF1	O43719	755 aa	Known RBP	10.27	□□□□□ -0.77
NR1I3-233	ENST00000515452	TEF	Q10587	303 aa		10.27	□□□□□ -0.77
NR1I3-233	ENST00000515452	TTLL6	Q8N841	843 aa		10.27	□□□□□ -0.77
NR1I3-233	ENST00000515452	BEGAIN	Q9BUH8	593 aa		10.27	□□□□□ -0.77
NR1I3-233	ENST00000515452	MIS18A	Q9NYP9	233 aa		10.27	□□□□□ -0.77
NR1I3-233	ENST00000515452	PTCD1	O75127	700 aa	Known RBP	10.26	□□□□□ -0.77
NR1I3-233	ENST00000515452	LDHD	Q86WU2	507 aa		10.26	□□□□□ -0.77
NR1I3-233	ENST00000515452	RBM42	Q9BTD8	480 aa	Known RBP	10.26	□□□□□ -0.77
NR1I3-233	ENST00000515452	WDR33	Q9C0J8	1336 aa	Known RBP	10.26	□□□□□ -0.77
NR1I3-233	ENST00000515452	IQCA1L	A6NCM1	817 aa		10.25	□□□□□ -0.77
NR1I3-233	ENST00000515452	RASSF10	A6NK89	507 aa		10.25	□□□□□ -0.77
NR1I3-233	ENST00000515452	BTBD11	A6QL63	1104 aa		10.25	□□□□□ -0.77
NR1I3-233	ENST00000515452	ITGBL1	O95965	494 aa	Predicted RBP	10.25	□□□□□ -0.77
NR1I3-233	ENST00000515452	TM4SF1	P30408	202 aa		10.25	□□□□□ -0.77
NR1I3-233	ENST00000515452	ERFE	Q4G0M1	354 aa		10.25	□□□□□ -0.77
NR1I3-233	ENST00000515452	ZNF496	Q96IT1	587 aa	Predicted RBP	10.25	□□□□□ -0.77
NR1I3-233	ENST00000515452	CNTNAP4	Q9C0A0	1308 aa		10.25	□□□□□ -0.77
NR1I3-233	ENST00000515452	PRAMEF22	A3QJZ6	481 aa		10.24	□□□□□ -0.77
NR1I3-233	ENST00000515452	POTEI	P0CG38	1075 aa		10.24	□□□□□ -0.77
NR1I3-233	ENST00000515452	POTEJ	P0CG39	1038 aa		10.24	□□□□□ -0.77
NR1I3-233	ENST00000515452	FKBP8	Q14318	412 aa		10.24	□□□□□ -0.77
NR1I3-233	ENST00000515452	TAF7	Q15545	349 aa	Predicted RBP	10.24	□□□□□ -0.77
NR1I3-233	ENST00000515452	ZNF790	Q6PG37	636 aa		10.24	□□□□□ -0.77
NR1I3-233	ENST00000515452	DNAJC10	Q8IXB1	793 aa		10.24	□□□□□ -0.77
NR1I3-233	ENST00000515452	SALL2	Q9Y467	1007 aa	Predicted RBP	10.24	□□□□□ -0.77
NR1I3-233	ENST00000515452	PDE4DIP	Q5VU43	2346 aa		10.24	□□□□□ -0.77
NR1I3-233	ENST00000515452	POLRMT	O00411	1230 aa	Known RBP	10.23	□□□□□ -0.77
NR1I3-233	ENST00000515452	DDN	O94850	711 aa	Predicted RBP	10.23	□□□□□ -0.77
NR1I3-233	ENST00000515452	DDR1	Q08345	913 aa		10.23	□□□□□ -0.77
NR1I3-233	ENST00000515452	LMOD3	Q0VAK6	560 aa		10.23	□□□□□ -0.77
NR1I3-233	ENST00000515452	HEG1	Q9ULI3	1381 aa		10.23	□□□□□ -0.77
NR1I3-233	ENST00000515452		H0YIN7	160 aa		10.22	□□□□□ -0.77
NR1I3-233	ENST00000515452	NFKBIE	O00221	500 aa		10.22	□□□□□ -0.77
NR1I3-233	ENST00000515452	WWC1	Q8IX03	1113 aa		10.22	□□□□□ -0.77
NR1I3-233	ENST00000515452	BCOR	Q6W2J9	1755 aa		10.21	□□□□□ -0.77
NR1I3-233	ENST00000515452	ECE1	P42892	770 aa		10.21	□□□□□ -0.77
NR1I3-233	ENST00000515452	KRT24	Q2M2I5	525 aa		10.21	□□□□□ -0.77
NR1I3-233	ENST00000515452	TTC5	Q8N0Z6	440 aa		10.21	□□□□□ -0.77
NR1I3-233	ENST00000515452	MCOLN1	Q9GZU1	580 aa		10.21	□□□□□ -0.77
NR1I3-233	ENST00000515452	SRP68	Q9UHB9	627 aa	Known RBP	10.21	□□□□□ -0.77
NR1I3-233	ENST00000515452	CLEC11A	Q9Y240	323 aa		10.21	□□□□□ -0.77
NR1I3-233	ENST00000515452	LAS1L	Q9Y4W2	734 aa	Known RBP	10.21	□□□□□ -0.77
NR1I3-233	ENST00000515452	USP42	Q9H9J4	1324 aa	Known RBP	10.21	□□□□□ -0.78
NR1I3-233	ENST00000515452	CHL1	O00533	1208 aa		10.2	□□□□□ -0.78
NR1I3-233	ENST00000515452	ZPR1	O75312	459 aa		10.2	□□□□□ -0.78
NR1I3-233	ENST00000515452	ZNF853	P0CG23	659 aa		10.2	□□□□□ -0.78
NR1I3-233	ENST00000515452	CYP19A1	P11511	503 aa	Predicted RBP	10.2	□□□□□ -0.78
NR1I3-233	ENST00000515452	EIF4A1	P60842	406 aa	Known RBP	10.2	□□□□□ -0.78
NR1I3-233	ENST00000515452	SCN7A	Q01118	1682 aa		10.2	□□□□□ -0.78
NR1I3-233	ENST00000515452	CCDC27	Q2M243	656 aa		10.2	□□□□□ -0.78
NR1I3-233	ENST00000515452	PRPF38B	Q5VTL8	546 aa	Known RBP	10.2	□□□□□ -0.78
NR1I3-233	ENST00000515452	INTS5	Q6P9B9	1019 aa	Known RBP	10.2	□□□□□ -0.78
NR1I3-233	ENST00000515452	C2CD5	Q86YS7	1000 aa		10.2	□□□□□ -0.78
NR1I3-233	ENST00000515452	ZNF521	Q96K83	1311 aa		10.2	□□□□□ -0.78
NR1I3-233	ENST00000515452	FMNL2	Q96PY5	1086 aa		10.2	□□□□□ -0.78
NR1I3-233	ENST00000515452	TAF1D	Q9H5J8	278 aa	Predicted RBP	10.2	□□□□□ -0.78
NR1I3-233	ENST00000515452	SPINK5	Q9NQ38	1064 aa	Predicted RBP	10.2	□□□□□ -0.78
NR1I3-233	ENST00000515452	MBIP	Q9NS73	344 aa		10.2	□□□□□ -0.78
NR1I3-233	ENST00000515452	TSPYL4	Q9UJ04	414 aa		10.2	□□□□□ -0.78
NR1I3-233	ENST00000515452	ABT1	Q9ULW3	272 aa	Known RBP	10.2	□□□□□ -0.78
NR1I3-233	ENST00000515452	PDZRN3	Q9UPQ7	1066 aa		10.2	□□□□□ -0.78
NR1I3-233	ENST00000515452	CCDC88A	Q3V6T2	1871 aa		10.19	□□□□□ -0.78
NR1I3-233	ENST00000515452	CRKL	P46109	303 aa	Known RBP	10.19	□□□□□ -0.78
NR1I3-233	ENST00000515452	PNMA8A	Q86V59	439 aa	Predicted RBP	10.19	□□□□□ -0.78
NR1I3-233	ENST00000515452	VSIG10	Q8N0Z9	540 aa		10.19	□□□□□ -0.78
NR1I3-233	ENST00000515452	CNTROB	Q8N137	903 aa		10.19	□□□□□ -0.78
NR1I3-233	ENST00000515452	GPR101	Q96P66	508 aa	Predicted RBP	10.19	□□□□□ -0.78
NR1I3-233	ENST00000515452	USP16	Q9Y5T5	823 aa		10.19	□□□□□ -0.78
NR1I3-233	ENST00000515452	CA12	O43570	354 aa		10.18	□□□□□ -0.78
NR1I3-233	ENST00000515452	SERPINB2	P05120	415 aa		10.18	□□□□□ -0.78
NR1I3-233	ENST00000515452	MAP2K2	P36507	400 aa		10.18	□□□□□ -0.78
NR1I3-233	ENST00000515452	PIP4K2A	P48426	406 aa	Predicted RBP	10.18	□□□□□ -0.78
NR1I3-233	ENST00000515452	EAPP	Q56P03	285 aa	Predicted RBP	10.18	□□□□□ -0.78
NR1I3-233	ENST00000515452	TSR2	Q969E8	191 aa	Known RBP	10.18	□□□□□ -0.78
NR1I3-233	ENST00000515452	L3MBTL3	Q96JM7	780 aa	Predicted RBP	10.18	□□□□□ -0.78
NR1I3-233	ENST00000515452	ZBTB1	Q9Y2K1	713 aa		10.18	□□□□□ -0.78
NR1I3-233	ENST00000515452	NUP98	P52948	1817 aa		10.18	□□□□□ -0.78
NR1I3-233	ENST00000515452	LTBP3	Q9NS15	1303 aa		10.17	□□□□□ -0.78
NR1I3-233	ENST00000515452	C21orf2	O43822	256 aa		10.17	□□□□□ -0.78
NR1I3-233	ENST00000515452	MYCN	P04198	464 aa	Predicted RBP	10.17	□□□□□ -0.78
NR1I3-233	ENST00000515452	A1BG	P04217	495 aa		10.17	□□□□□ -0.78
NR1I3-233	ENST00000515452	DGKZ	Q13574	1117 aa		10.17	□□□□□ -0.78
NR1I3-233	ENST00000515452	USPL1	Q5W0Q7	1092 aa		10.17	□□□□□ -0.78
NR1I3-233	ENST00000515452	CAPNS2	Q96L46	248 aa		10.17	□□□□□ -0.78
NR1I3-233	ENST00000515452	TAOK3	Q9H2K8	898 aa		10.17	□□□□□ -0.78
NR1I3-233	ENST00000515452	IFT57	Q9NWB7	429 aa		10.17	□□□□□ -0.78
NR1I3-233	ENST00000515452	BABAM1	Q9NWV8	329 aa		10.17	□□□□□ -0.78
NR1I3-233	ENST00000515452	AFDN	P55196	1824 aa	Known RBP	10.17	□□□□□ -0.78
NR1I3-233	ENST00000515452	SOS1	Q07889	1333 aa	Predicted RBP	10.16	□□□□□ -0.78
NR1I3-233	ENST00000515452	NBPF26	B4DH59	902 aa		10.16	□□□□□ -0.78
NR1I3-233	ENST00000515452	SNRPA1	P09661	255 aa	Known RBP	10.16	□□□□□ -0.78
NR1I3-233	ENST00000515452	NBPF10	Q6P3W6	841 aa	Known RBP	10.16	□□□□□ -0.78
NR1I3-233	ENST00000515452	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	10.16	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms