RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 PRIM1P49642 420 aaKnown RBP14.81□□□□□ -0.04
USP53-209ENST00000514665 ARHGEF12Q9NZN5 1544 aa14.81□□□□□ -0.04
USP53-209ENST00000514665 SETQ01105 290 aaPredicted RBP14.81□□□□□ -0.04
USP53-209ENST00000514665 ISM2Q6H9L7 571 aa14.81□□□□□ -0.04
USP53-209ENST00000514665 LRSAM1Q6UWE0 723 aa14.81□□□□□ -0.04
USP53-209ENST00000514665 USP48Q86UV5 1035 aa14.81□□□□□ -0.04
USP53-209ENST00000514665 ANKRD24Q8TF21 1146 aa14.81□□□□□ -0.04
USP53-209ENST00000514665 PRDM10Q9NQV6 1147 aa14.81□□□□□ -0.04
USP53-209ENST00000514665 DDX19AQ9NUU7 478 aaKnown RBP14.81□□□□□ -0.04
USP53-209ENST00000514665 HMGB1P09429 215 aaKnown RBP14.81□□□□□ -0.04
USP53-209ENST00000514665 AXDND1Q5T1B0 1012 aaPredicted RBP14.81□□□□□ -0.04
USP53-209ENST00000514665 RBM8AQ9Y5S9 174 aaKnown RBP14.81□□□□□ -0.04
USP53-209ENST00000514665 STIM1Q13586 685 aa14.8□□□□□ -0.04
USP53-209ENST00000514665 RAB3GAP1Q15042 981 aa14.8□□□□□ -0.04
USP53-209ENST00000514665 ANKRD13DQ6ZTN6 518 aa14.8□□□□□ -0.04
USP53-209ENST00000514665 CCDC144CPQ8IYA2 1237 aa14.8□□□□□ -0.04
USP53-209ENST00000514665 TRMT112Q9UI30 125 aaKnown RBP14.8□□□□□ -0.04
USP53-209ENST00000514665 USP16Q9Y5T5 823 aa14.8□□□□□ -0.04
USP53-209ENST00000514665 CBX1P83916 185 aa14.8□□□□□ -0.04
USP53-209ENST00000514665 COPS6Q7L5N1 327 aa14.8□□□□□ -0.04
USP53-209ENST00000514665 G2E3Q7L622 706 aa14.8□□□□□ -0.04
USP53-209ENST00000514665 KRT28Q7Z3Y7 464 aa14.8□□□□□ -0.04
USP53-209ENST00000514665 XAGE3Q8WTP9 111 aa14.8□□□□□ -0.04
USP53-209ENST00000514665 ITSN2Q9NZM3 1697 aa14.8□□□□□ -0.04
USP53-209ENST00000514665 CTTNBP2Q8WZ74 1663 aa14.79□□□□□ -0.04
USP53-209ENST00000514665 TNNT1P13805 278 aa14.79□□□□□ -0.04
USP53-209ENST00000514665 LDHAL6AQ6ZMR3 332 aa14.79□□□□□ -0.04
USP53-209ENST00000514665 DEF6Q9H4E7 631 aa14.79□□□□□ -0.04
USP53-209ENST00000514665 UHRF1BP1Q6BDS2 1440 aa14.79□□□□□ -0.04
USP53-209ENST00000514665 SOGA3Q5TF21 947 aa14.79□□□□□ -0.04
USP53-209ENST00000514665 ERCC4Q92889 916 aaPredicted RBP14.79□□□□□ -0.04
USP53-209ENST00000514665 TANGO6Q9C0B7 1094 aa14.79□□□□□ -0.04
USP53-209ENST00000514665 ORC3Q9UBD5 711 aaPredicted RBP14.79□□□□□ -0.04
USP53-209ENST00000514665 CLCN1P35523 988 aa14.79□□□□□ -0.04
USP53-209ENST00000514665 DHX8Q14562 1220 aaKnown RBP14.79□□□□□ -0.04
USP53-209ENST00000514665 TRIM35Q9UPQ4 493 aa14.79□□□□□ -0.04
USP53-209ENST00000514665 DNM1Q05193 864 aaKnown RBP14.78□□□□□ -0.04
USP53-209ENST00000514665 WASF1Q92558 559 aa14.78□□□□□ -0.04
USP53-209ENST00000514665 IFIT3O14879 490 aaKnown RBP14.78□□□□□ -0.04
USP53-209ENST00000514665 MICU3Q86XE3 530 aa14.78□□□□□ -0.04
USP53-209ENST00000514665 IFNL2Q8IZJ0 200 aa14.78□□□□□ -0.04
USP53-209ENST00000514665 LRRC59Q96AG4 307 aaKnown RBP14.78□□□□□ -0.04
USP53-209ENST00000514665 EYA1Q99502 592 aa14.78□□□□□ -0.04
USP53-209ENST00000514665 CCDC66A2RUB6 948 aa14.78□□□□□ -0.04
USP53-209ENST00000514665 URI1O94763 535 aaPredicted RBP14.78□□□□□ -0.04
USP53-209ENST00000514665 ARHGAP29Q52LW3 1261 aa14.78□□□□□ -0.04
USP53-209ENST00000514665 ZFYVE27Q5T4F4 411 aa14.78□□□□□ -0.04
USP53-209ENST00000514665 ASXL2Q76L83 1435 aa14.78□□□□□ -0.04
USP53-209ENST00000514665 KIAA0556O60303 1618 aa14.77□□□□□ -0.04
USP53-209ENST00000514665 CWF19L2Q2TBE0 894 aaKnown RBP14.77□□□□□ -0.04
USP53-209ENST00000514665 KIF18AQ8NI77 898 aa14.77□□□□□ -0.04
USP53-209ENST00000514665 RANBP6O60518 1105 aaKnown RBP14.77□□□□□ -0.04
USP53-209ENST00000514665 ANAPC15P60006 121 aa14.77□□□□□ -0.04
USP53-209ENST00000514665 PUS7Q96PZ0 661 aaKnown RBP14.77□□□□□ -0.04
USP53-209ENST00000514665 TTC12Q9H892 705 aaPredicted RBP14.77□□□□□ -0.04
USP53-209ENST00000514665 GRM8O00222 908 aa14.77□□□□□ -0.05
USP53-209ENST00000514665 CPA1P15085 419 aa14.77□□□□□ -0.05
USP53-209ENST00000514665 NOM1Q5C9Z4 860 aaKnown RBP14.77□□□□□ -0.05
USP53-209ENST00000514665 PHAXQ9H814 394 aaKnown RBP14.77□□□□□ -0.05
USP53-209ENST00000514665 MAP3K12Q12852 859 aa14.77□□□□□ -0.05
USP53-209ENST00000514665 USP26Q9BXU7 913 aa14.77□□□□□ -0.05
USP53-209ENST00000514665 EPB41L2O43491 1005 aaKnown RBP14.76□□□□□ -0.05
USP53-209ENST00000514665 DTNBO60941 627 aa14.76□□□□□ -0.05
USP53-209ENST00000514665 PKNOX2Q96KN3 472 aa14.76□□□□□ -0.05
USP53-209ENST00000514665 LMBR1LQ6UX01 489 aa14.76□□□□□ -0.05
USP53-209ENST00000514665 SLC12A7Q9Y666 1083 aa14.76□□□□□ -0.05
USP53-209ENST00000514665 SNRPA1P09661 255 aaKnown RBP14.76□□□□□ -0.05
USP53-209ENST00000514665 TOP1P11387 765 aaKnown RBP14.76□□□□□ -0.05
USP53-209ENST00000514665 EIF5P55010 431 aaKnown RBP14.76□□□□□ -0.05
USP53-209ENST00000514665 CPLX3Q8WVH0 158 aa14.76□□□□□ -0.05
USP53-209ENST00000514665 CWC25Q9NXE8 425 aaPredicted RBP14.76□□□□□ -0.05
USP53-209ENST00000514665 DACT1Q9NYF0 836 aa14.76□□□□□ -0.05
USP53-209ENST00000514665 GOLGA8AA7E2F4 631 aa14.75□□□□□ -0.05
USP53-209ENST00000514665 CTAGE5O15320 804 aa14.75□□□□□ -0.05
USP53-209ENST00000514665 KLHL34Q8N239 644 aa14.75□□□□□ -0.05
USP53-209ENST00000514665 CNNM3Q8NE01 707 aa14.75□□□□□ -0.05
USP53-209ENST00000514665 MAP3K19Q56UN5 1328 aa14.75□□□□□ -0.05
USP53-209ENST00000514665 CHMLP26374 656 aa14.75□□□□□ -0.05
USP53-209ENST00000514665 ERICH4A6NGS2 130 aa14.75□□□□□ -0.05
USP53-209ENST00000514665 AK2P54819 239 aa14.75□□□□□ -0.05
USP53-209ENST00000514665 KSR2Q6VAB6 950 aa14.75□□□□□ -0.05
USP53-209ENST00000514665 SPATA31E1Q6ZUB1 1445 aa14.75□□□□□ -0.05
USP53-209ENST00000514665 ANKRD18BA2A2Z9 1011 aa14.74□□□□□ -0.05
USP53-209ENST00000514665 USP5P45974 858 aa14.74□□□□□ -0.05
USP53-209ENST00000514665 TMC6Q7Z403 805 aa14.74□□□□□ -0.05
USP53-209ENST00000514665 TMX1Q9H3N1 280 aa14.74□□□□□ -0.05
USP53-209ENST00000514665 HMG20BQ9P0W2 317 aa14.74□□□□□ -0.05
USP53-209ENST00000514665 CCDC196A0A1B0GTZ2 297 aa14.74□□□□□ -0.05
USP53-209ENST00000514665 CDR1P51861 262 aa14.74□□□□□ -0.05
USP53-209ENST00000514665 TTC21AQ8NDW8 1320 aa14.74□□□□□ -0.05
USP53-209ENST00000514665 NPATQ14207 1427 aa14.74□□□□□ -0.05
USP53-209ENST00000514665 TNRQ92752 1358 aa14.74□□□□□ -0.05
USP53-209ENST00000514665 H0YHG0 523 aa14.74□□□□□ -0.05
USP53-209ENST00000514665 MCM5P33992 734 aa14.74□□□□□ -0.05
USP53-209ENST00000514665 IARSP41252 1262 aaKnown RBP14.74□□□□□ -0.05
USP53-209ENST00000514665 F13A1P00488 732 aa14.73□□□□□ -0.05
USP53-209ENST00000514665 DNMT1P26358 1616 aaKnown RBP14.73□□□□□ -0.05
USP53-209ENST00000514665 NPC1L1Q9UHC9 1359 aa14.73□□□□□ -0.05
USP53-209ENST00000514665 NMIQ13287 307 aaPredicted RBP14.73□□□□□ -0.05
USP53-209ENST00000514665 CCDC181Q5TID7 509 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms