RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 ZBTB1Q9Y2K1 713 aa16.5■□□□□ 0.23
LIMCH1-220ENST00000514190 COG6Q9Y2V7 657 aa16.5■□□□□ 0.23
LIMCH1-220ENST00000514190 QSER1Q2KHR3 1735 aa16.5■□□□□ 0.23
LIMCH1-220ENST00000514190 CNTNAP4Q9C0A0 1308 aa16.49■□□□□ 0.23
LIMCH1-220ENST00000514190 CICQ96RK0 1608 aaPredicted RBP16.49■□□□□ 0.23
LIMCH1-220ENST00000514190 TJP1Q07157 1748 aa16.49■□□□□ 0.23
LIMCH1-220ENST00000514190 INTS3Q68E01 1043 aaKnown RBP16.49■□□□□ 0.23
LIMCH1-220ENST00000514190 ANKRD13DQ6ZTN6 518 aa16.49■□□□□ 0.23
LIMCH1-220ENST00000514190 EXOC6Q8TAG9 804 aa16.49■□□□□ 0.23
LIMCH1-220ENST00000514190 ZBTB7AO95365 584 aa16.48■□□□□ 0.23
LIMCH1-220ENST00000514190 EIF5P55010 431 aaKnown RBP16.48■□□□□ 0.23
LIMCH1-220ENST00000514190 MVPQ14764 893 aaKnown RBP16.48■□□□□ 0.23
LIMCH1-220ENST00000514190 TTLL7Q6ZT98 887 aa16.48■□□□□ 0.23
LIMCH1-220ENST00000514190 DNAAF4Q8WXU2 420 aa16.48■□□□□ 0.23
LIMCH1-220ENST00000514190 ADCY9O60503 1353 aa16.48■□□□□ 0.23
LIMCH1-220ENST00000514190 TUBGCP6Q96RT7 1819 aa16.47■□□□□ 0.23
LIMCH1-220ENST00000514190 CCT4P50991 539 aaKnown RBP16.47■□□□□ 0.23
LIMCH1-220ENST00000514190 RIC3Q7Z5B4 369 aa16.47■□□□□ 0.23
LIMCH1-220ENST00000514190 PLBD2Q8NHP8 589 aa16.47■□□□□ 0.23
LIMCH1-220ENST00000514190 MAP3K2Q9Y2U5 619 aa16.47■□□□□ 0.23
LIMCH1-220ENST00000514190 SLC4A10Q6U841 1118 aa16.46■□□□□ 0.23
LIMCH1-220ENST00000514190 NPM2Q86SE8 214 aaKnown RBP16.46■□□□□ 0.23
LIMCH1-220ENST00000514190 ITPRIPQ8IWB1 547 aa16.46■□□□□ 0.23
LIMCH1-220ENST00000514190 MTFR1LQ9H019 292 aa16.46■□□□□ 0.23
LIMCH1-220ENST00000514190 PPP1R1BQ9UD71 204 aaPredicted RBP16.46■□□□□ 0.23
LIMCH1-220ENST00000514190 DDX19BQ9UMR2 479 aa16.46■□□□□ 0.23
LIMCH1-220ENST00000514190 TAF1LQ8IZX4 1826 aa16.45■□□□□ 0.22
LIMCH1-220ENST00000514190 RPS6KA4O75676 772 aa16.45■□□□□ 0.22
LIMCH1-220ENST00000514190 METTL22Q9BUU2 404 aaPredicted RBP16.45■□□□□ 0.22
LIMCH1-220ENST00000514190 TFCP2L1Q9NZI6 479 aa16.45■□□□□ 0.22
LIMCH1-220ENST00000514190 ZNF330Q9Y3S2 320 aaPredicted RBP16.45■□□□□ 0.22
LIMCH1-220ENST00000514190 PNPLA7Q6ZV29 1317 aa16.45■□□□□ 0.22
LIMCH1-220ENST00000514190 PTGER2P43116 358 aa16.44■□□□□ 0.22
LIMCH1-220ENST00000514190 AAMPQ13685 434 aa16.44■□□□□ 0.22
LIMCH1-220ENST00000514190 BEND3Q5T5X7 828 aa16.44■□□□□ 0.22
LIMCH1-220ENST00000514190 KIF6Q6ZMV9 814 aa16.44■□□□□ 0.22
LIMCH1-220ENST00000514190 CHMP4BQ9H444 224 aaKnown RBP16.44■□□□□ 0.22
LIMCH1-220ENST00000514190 ATF5Q9Y2D1 282 aaPredicted RBP16.44■□□□□ 0.22
LIMCH1-220ENST00000514190 A0A087WZG4 1122 aa16.43■□□□□ 0.22
LIMCH1-220ENST00000514190 ERVV-1B6SEH8 477 aa16.43■□□□□ 0.22
LIMCH1-220ENST00000514190 ZBTB7BO15156 539 aaPredicted RBP16.43■□□□□ 0.22
LIMCH1-220ENST00000514190 DZIP3Q86Y13 1208 aaKnown RBP16.43■□□□□ 0.22
LIMCH1-220ENST00000514190 SRCIN1Q9C0H9 1055 aa16.43■□□□□ 0.22
LIMCH1-220ENST00000514190 MAP3K15Q6ZN16 1313 aa16.43■□□□□ 0.22
LIMCH1-220ENST00000514190 GNPATO15228 680 aa16.42■□□□□ 0.22
LIMCH1-220ENST00000514190 ALDH1L1O75891 902 aa16.42■□□□□ 0.22
LIMCH1-220ENST00000514190 NEXNQ0ZGT2 675 aa16.42■□□□□ 0.22
LIMCH1-220ENST00000514190 LINS1Q8NG48 757 aa16.42■□□□□ 0.22
LIMCH1-220ENST00000514190 ARXQ96QS3 562 aa16.42■□□□□ 0.22
LIMCH1-220ENST00000514190 ZBTB3Q9H5J0 574 aa16.42■□□□□ 0.22
LIMCH1-220ENST00000514190 TBC1D2BQ9UPU7 963 aa16.42■□□□□ 0.22
LIMCH1-220ENST00000514190 RTCBQ9Y3I0 505 aaKnown RBP16.42■□□□□ 0.22
LIMCH1-220ENST00000514190 ATP10DQ9P241 1426 aa16.42■□□□□ 0.22
LIMCH1-220ENST00000514190 COL5A3P25940 1745 aaPredicted RBP16.42■□□□□ 0.22
LIMCH1-220ENST00000514190 PXDNLA1KZ92 1463 aa16.42■□□□□ 0.22
LIMCH1-220ENST00000514190 MYH14Q7Z406 1995 aaKnown RBP16.41■□□□□ 0.22
LIMCH1-220ENST00000514190 SLC16A10Q8TF71 515 aa16.41■□□□□ 0.22
LIMCH1-220ENST00000514190 AK7Q96M32 723 aa16.41■□□□□ 0.22
LIMCH1-220ENST00000514190 SGIP1Q9BQI5 828 aa16.41■□□□□ 0.22
LIMCH1-220ENST00000514190 ZBTB40Q9NUA8 1239 aa16.41■□□□□ 0.22
LIMCH1-220ENST00000514190 C4BP0C0L5 1744 aa16.41■□□□□ 0.22
LIMCH1-220ENST00000514190 IGKV5-2P06315 115 aa16.4■□□□□ 0.22
LIMCH1-220ENST00000514190 TCIRG1Q13488 830 aa16.4■□□□□ 0.22
LIMCH1-220ENST00000514190 MYD88Q99836 296 aa16.4■□□□□ 0.22
LIMCH1-220ENST00000514190 PPP4R2Q9NY27 417 aa16.4■□□□□ 0.22
LIMCH1-220ENST00000514190 COL15A1P39059 1388 aa16.39■□□□□ 0.21
LIMCH1-220ENST00000514190 IBTKQ9P2D0 1353 aaPredicted RBP16.39■□□□□ 0.21
LIMCH1-220ENST00000514190 COL24A1Q17RW2 1714 aa16.39■□□□□ 0.21
LIMCH1-220ENST00000514190 CAMTA2O94983 1202 aa16.39■□□□□ 0.21
LIMCH1-220ENST00000514190 ADRA2BP18089 450 aa16.39■□□□□ 0.21
LIMCH1-220ENST00000514190 HSP90AB3PQ58FF7 597 aa16.39■□□□□ 0.21
LIMCH1-220ENST00000514190 GIGYF2Q6Y7W6 1299 aaKnown RBP16.39■□□□□ 0.21
LIMCH1-220ENST00000514190 USP44Q9H0E7 712 aa16.39■□□□□ 0.21
LIMCH1-220ENST00000514190 NEURL1BA8MQ27 555 aa16.38■□□□□ 0.21
LIMCH1-220ENST00000514190 RGL2O15211 777 aa16.38■□□□□ 0.21
LIMCH1-220ENST00000514190 TRIM28Q13263 835 aaKnown RBP16.38■□□□□ 0.21
LIMCH1-220ENST00000514190 HLFQ16534 295 aa16.38■□□□□ 0.21
LIMCH1-220ENST00000514190 CWF19L2Q2TBE0 894 aaKnown RBP16.38■□□□□ 0.21
LIMCH1-220ENST00000514190 TRAPPC3LQ5T215 181 aa16.38■□□□□ 0.21
LIMCH1-220ENST00000514190 AMIGO3Q86WK7 504 aa16.38■□□□□ 0.21
LIMCH1-220ENST00000514190 ISCA1Q9BUE6 129 aa16.38■□□□□ 0.21
LIMCH1-220ENST00000514190 ATP5J2-PTCD1G3V325 749 aa16.37■□□□□ 0.21
LIMCH1-220ENST00000514190 GNAI3P08754 354 aa16.37■□□□□ 0.21
LIMCH1-220ENST00000514190 SMIM5Q71RC9 77 aa16.37■□□□□ 0.21
LIMCH1-220ENST00000514190 COL23A1Q86Y22 540 aaPredicted RBP16.37■□□□□ 0.21
LIMCH1-220ENST00000514190 ARHGEF1Q92888 912 aaKnown RBP16.37■□□□□ 0.21
LIMCH1-220ENST00000514190 MEIS3Q99687 375 aa16.37■□□□□ 0.21
LIMCH1-220ENST00000514190 NARFQ9UHQ1 456 aa16.37■□□□□ 0.21
LIMCH1-220ENST00000514190 UBR3Q6ZT12 1888 aa16.36■□□□□ 0.21
LIMCH1-220ENST00000514190 MSH5O43196 834 aa16.36■□□□□ 0.21
LIMCH1-220ENST00000514190 SSFA2P28290 1259 aa16.36■□□□□ 0.21
LIMCH1-220ENST00000514190 GCKRQ14397 625 aa16.36■□□□□ 0.21
LIMCH1-220ENST00000514190 CLEC4GQ6UXB4 293 aa16.36■□□□□ 0.21
LIMCH1-220ENST00000514190 CCDC191Q8NCU4 936 aa16.36■□□□□ 0.21
LIMCH1-220ENST00000514190 FLAD1Q8NFF5 587 aa16.36■□□□□ 0.21
LIMCH1-220ENST00000514190 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP16.35■□□□□ 0.21
LIMCH1-220ENST00000514190 ZNF34Q8IZ26 560 aa16.35■□□□□ 0.21
LIMCH1-220ENST00000514190 C9orf78Q9NZ63 289 aaPredicted RBP16.35■□□□□ 0.21
LIMCH1-220ENST00000514190 GRM8O00222 908 aa16.34■□□□□ 0.21
LIMCH1-220ENST00000514190 ZPR1O75312 459 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms