RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 RRAGCQ9HB90 399 aa15.33■□□□□ 0.04
HMGCS1-204ENST00000507293 NUP98P52948 1817 aa15.32■□□□□ 0.04
HMGCS1-204ENST00000507293 NBPF26B4DH59 902 aa15.32■□□□□ 0.04
HMGCS1-204ENST00000507293 TAF7Q15545 349 aaPredicted RBP15.32■□□□□ 0.04
HMGCS1-204ENST00000507293 NBPF10Q6P3W6 841 aaKnown RBP15.32■□□□□ 0.04
HMGCS1-204ENST00000507293 NBPF15Q8N660 670 aa15.32■□□□□ 0.04
HMGCS1-204ENST00000507293 MIS18AQ9NYP9 233 aa15.32■□□□□ 0.04
HMGCS1-204ENST00000507293 ZNF219Q9P2Y4 722 aaPredicted RBP15.32■□□□□ 0.04
HMGCS1-204ENST00000507293 C21orf2O43822 256 aa15.31■□□□□ 0.04
HMGCS1-204ENST00000507293 ZNF652Q9Y2D9 606 aa15.31■□□□□ 0.04
HMGCS1-204ENST00000507293 STYK1Q6J9G0 422 aa15.3■□□□□ 0.04
HMGCS1-204ENST00000507293 CLEC4GQ6UXB4 293 aa15.3■□□□□ 0.04
HMGCS1-204ENST00000507293 NBPF5PQ86XG9 351 aaPredicted RBP15.3■□□□□ 0.04
HMGCS1-204ENST00000507293 PLEKHF1Q96S99 279 aa15.3■□□□□ 0.04
HMGCS1-204ENST00000507293 MAPK8IP3Q9UPT6 1336 aa15.29■□□□□ 0.04
HMGCS1-204ENST00000507293 GLTPD2A6NH11 291 aa15.29■□□□□ 0.04
HMGCS1-204ENST00000507293 SRGNP10124 158 aa15.29■□□□□ 0.04
HMGCS1-204ENST00000507293 FSTL1Q12841 308 aa15.29■□□□□ 0.04
HMGCS1-204ENST00000507293 NFE2L2Q16236 605 aa15.29■□□□□ 0.04
HMGCS1-204ENST00000507293 PNISRQ8TF01 805 aaKnown RBP15.29■□□□□ 0.04
HMGCS1-204ENST00000507293 CNKSR1Q969H4 720 aa15.29■□□□□ 0.04
HMGCS1-204ENST00000507293 THUMPD2Q9BTF0 503 aaKnown RBP15.29■□□□□ 0.04
HMGCS1-204ENST00000507293 PRPF40BQ6NWY9 871 aaKnown RBP15.28■□□□□ 0.04
HMGCS1-204ENST00000507293 MASTLQ96GX5 879 aa15.28■□□□□ 0.04
HMGCS1-204ENST00000507293 NIP7Q9Y221 180 aaKnown RBP eCLIP15.28■□□□□ 0.04
HMGCS1-204ENST00000507293 CEP350Q5VT06 3117 aa15.27■□□□□ 0.04
HMGCS1-204ENST00000507293 FAM177BA6PVY3 158 aa15.27■□□□□ 0.04
HMGCS1-204ENST00000507293 RGL2O15211 777 aa15.27■□□□□ 0.04
HMGCS1-204ENST00000507293 TAOK3Q9H2K8 898 aa15.27■□□□□ 0.04
HMGCS1-204ENST00000507293 LTBP3Q9NS15 1303 aa15.26■□□□□ 0.03
HMGCS1-204ENST00000507293 VEGFAP15692 232 aaPredicted RBP15.26■□□□□ 0.03
HMGCS1-204ENST00000507293 EIF4A1P60842 406 aaKnown RBP15.26■□□□□ 0.03
HMGCS1-204ENST00000507293 HLFQ16534 295 aa15.26■□□□□ 0.03
HMGCS1-204ENST00000507293 ERFEQ4G0M1 354 aa15.26■□□□□ 0.03
HMGCS1-204ENST00000507293 DNAJC5GQ8N7S2 189 aa15.26■□□□□ 0.03
HMGCS1-204ENST00000507293 SMC1BQ8NDV3 1235 aa15.26■□□□□ 0.03
HMGCS1-204ENST00000507293 PNNQ9H307 717 aaKnown RBP15.26■□□□□ 0.03
HMGCS1-204ENST00000507293 HTRA3P83110 453 aa15.25■□□□□ 0.03
HMGCS1-204ENST00000507293 TPTE2Q6XPS3 522 aa15.25■□□□□ 0.03
HMGCS1-204ENST00000507293 NGEFQ8N5V2 710 aa15.25■□□□□ 0.03
HMGCS1-204ENST00000507293 NPR1P16066 1061 aa15.24■□□□□ 0.03
HMGCS1-204ENST00000507293 SOGA3Q5TF21 947 aa15.24■□□□□ 0.03
HMGCS1-204ENST00000507293 CCDC93Q567U6 631 aa15.23■□□□□ 0.03
HMGCS1-204ENST00000507293 DPY19L2Q6NUT2 758 aa15.23■□□□□ 0.03
HMGCS1-204ENST00000507293 RRP7AQ9Y3A4 280 aaKnown RBP15.23■□□□□ 0.03
HMGCS1-204ENST00000507293 ABCC12Q96J65 1359 aa15.23■□□□□ 0.03
HMGCS1-204ENST00000507293 MAP3K15Q6ZN16 1313 aa15.22■□□□□ 0.03
HMGCS1-204ENST00000507293 ANKRD36CQ5JPF3 1778 aa15.22■□□□□ 0.03
HMGCS1-204ENST00000507293 KLRG2A4D1S0 409 aaPredicted RBP15.22■□□□□ 0.03
HMGCS1-204ENST00000507293 POTECB2RU33 542 aa15.22■□□□□ 0.03
HMGCS1-204ENST00000507293 MYL6BP14649 208 aa15.22■□□□□ 0.03
HMGCS1-204ENST00000507293 RALBP1Q15311 655 aa15.22■□□□□ 0.03
HMGCS1-204ENST00000507293 KIF6Q6ZMV9 814 aa15.22■□□□□ 0.03
HMGCS1-204ENST00000507293 TTLL7Q6ZT98 887 aa15.22■□□□□ 0.03
HMGCS1-204ENST00000507293 C7orf43Q8WVR3 580 aa15.22■□□□□ 0.03
HMGCS1-204ENST00000507293 ERVV-1B6SEH8 477 aa15.21■□□□□ 0.03
HMGCS1-204ENST00000507293 GTF2E1P29083 439 aaPredicted RBP15.21■□□□□ 0.03
HMGCS1-204ENST00000507293 TSPYL4Q9UJ04 414 aa15.21■□□□□ 0.03
HMGCS1-204ENST00000507293 SCN4AP35499 1836 aa15.2■□□□□ 0.02
HMGCS1-204ENST00000507293 RIPK4P57078 832 aa15.2■□□□□ 0.02
HMGCS1-204ENST00000507293 IFFO2Q5TF58 517 aa15.2■□□□□ 0.02
HMGCS1-204ENST00000507293 NUTM1Q86Y26 1132 aa15.2■□□□□ 0.02
HMGCS1-204ENST00000507293 KLRG1Q96E93 195 aa15.2■□□□□ 0.02
HMGCS1-204ENST00000507293 NYXQ9GZU5 481 aa15.2■□□□□ 0.02
HMGCS1-204ENST00000507293 ZBTB3Q9H5J0 574 aa15.2■□□□□ 0.02
HMGCS1-204ENST00000507293 ERBB4Q15303 1308 aa15.19■□□□□ 0.02
HMGCS1-204ENST00000507293 DDNO94850 711 aaPredicted RBP15.19■□□□□ 0.02
HMGCS1-204ENST00000507293 GPTP24298 496 aa15.19■□□□□ 0.02
HMGCS1-204ENST00000507293 FKBP4Q02790 459 aaKnown RBP eCLIP15.19■□□□□ 0.02
HMGCS1-204ENST00000507293 DDX10Q13206 875 aaKnown RBP15.19■□□□□ 0.02
HMGCS1-204ENST00000507293 OLFM4Q6UX06 510 aa15.19■□□□□ 0.02
HMGCS1-204ENST00000507293 IBTKQ9P2D0 1353 aaPredicted RBP15.19■□□□□ 0.02
HMGCS1-204ENST00000507293 UBN2Q6ZU65 1347 aa15.18■□□□□ 0.02
HMGCS1-204ENST00000507293 MYBBP1AQ9BQG0 1328 aaKnown RBP15.18■□□□□ 0.02
HMGCS1-204ENST00000507293 RIC1Q4ADV7 1423 aa15.18■□□□□ 0.02
HMGCS1-204ENST00000507293 TMPOP42166 694 aaKnown RBP15.18■□□□□ 0.02
HMGCS1-204ENST00000507293 LAMB2P55268 1798 aa15.18■□□□□ 0.02
HMGCS1-204ENST00000507293 ALDH1B1P30837 517 aa15.17■□□□□ 0.02
HMGCS1-204ENST00000507293 LMOD3Q0VAK6 560 aa15.17■□□□□ 0.02
HMGCS1-204ENST00000507293 CRY2Q49AN0 593 aa15.17■□□□□ 0.02
HMGCS1-204ENST00000507293 SUSD4Q5VX71 490 aa15.17■□□□□ 0.02
HMGCS1-204ENST00000507293 CCDC146Q8IYE0 955 aa15.17■□□□□ 0.02
HMGCS1-204ENST00000507293 ZNF277Q9NRM2 450 aaPredicted RBP15.17■□□□□ 0.02
HMGCS1-204ENST00000507293 SNED1Q8TER0 1413 aa15.17■□□□□ 0.02
HMGCS1-204ENST00000507293 EIF2S2P20042 333 aaKnown RBP15.16■□□□□ 0.02
HMGCS1-204ENST00000507293 GIGYF2Q6Y7W6 1299 aaKnown RBP15.16■□□□□ 0.02
HMGCS1-204ENST00000507293 ZNF34Q8IZ26 560 aa15.16■□□□□ 0.02
HMGCS1-204ENST00000507293 RTKN2Q8IZC4 609 aa15.16■□□□□ 0.02
HMGCS1-204ENST00000507293 JMYQ8N9B5 988 aa15.16■□□□□ 0.02
HMGCS1-204ENST00000507293 ZNF541Q9H0D2 1346 aa15.16■□□□□ 0.02
HMGCS1-204ENST00000507293 NTSR2O95665 410 aa15.15■□□□□ 0.02
HMGCS1-204ENST00000507293 ANXA1P04083 346 aa15.15■□□□□ 0.02
HMGCS1-204ENST00000507293 PDIA6Q15084 440 aa15.15■□□□□ 0.02
HMGCS1-204ENST00000507293 PROSER3Q2NL68 480 aa15.15■□□□□ 0.02
HMGCS1-204ENST00000507293 LRP10Q7Z4F1 713 aa15.15■□□□□ 0.02
HMGCS1-204ENST00000507293 BABAM1Q9NWV8 329 aa15.15■□□□□ 0.02
HMGCS1-204ENST00000507293 POTEIP0CG38 1075 aa15.14■□□□□ 0.01
HMGCS1-204ENST00000507293 POTEJP0CG39 1038 aa15.14■□□□□ 0.01
HMGCS1-204ENST00000507293 IARSP41252 1262 aaKnown RBP15.14■□□□□ 0.01
HMGCS1-204ENST00000507293 NEUROD2Q15784 382 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms