RNA–Protein interactions for RNA: ENST00000504634.5

NEDD9-209, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 3

Gene NEDD9, Length 745 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-209ENST00000504634 LTBP3Q9NS15 1303 aa16.19■□□□□ 0.18
NEDD9-209ENST00000504634 UBR2Q8IWV8 1755 aa16.18■□□□□ 0.18
NEDD9-209ENST00000504634 SNRPA1P09661 255 aaKnown RBP16.18■□□□□ 0.18
NEDD9-209ENST00000504634 HSPA1AP0DMV8 641 aaKnown RBP16.18■□□□□ 0.18
NEDD9-209ENST00000504634 HSPA1BP0DMV9 641 aaKnown RBP16.18■□□□□ 0.18
NEDD9-209ENST00000504634 CHADLQ6NUI6 762 aa16.18■□□□□ 0.18
NEDD9-209ENST00000504634 RSPH6AQ9H0K4 717 aa16.18■□□□□ 0.18
NEDD9-209ENST00000504634 USP16Q9Y5T5 823 aa16.18■□□□□ 0.18
NEDD9-209ENST00000504634 DDNO94850 711 aaPredicted RBP16.17■□□□□ 0.18
NEDD9-209ENST00000504634 U2AF1L5P0DN76 240 aaPredicted RBP16.17■□□□□ 0.18
NEDD9-209ENST00000504634 U2AF1Q01081 240 aaKnown RBP eCLIP16.17■□□□□ 0.18
NEDD9-209ENST00000504634 CLEC4GQ6UXB4 293 aa16.17■□□□□ 0.18
NEDD9-209ENST00000504634 DLEC1Q9Y238 1755 aa16.17■□□□□ 0.18
NEDD9-209ENST00000504634 MCM10Q7L590 875 aa16.16■□□□□ 0.18
NEDD9-209ENST00000504634 SCN7AQ01118 1682 aa16.15■□□□□ 0.18
NEDD9-209ENST00000504634 PRAMEF22A3QJZ6 481 aa16.15■□□□□ 0.18
NEDD9-209ENST00000504634 IQCA1LA6NCM1 817 aa16.15■□□□□ 0.18
NEDD9-209ENST00000504634 CCDC93Q567U6 631 aa16.15■□□□□ 0.18
NEDD9-209ENST00000504634 TPTE2Q6XPS3 522 aa16.15■□□□□ 0.18
NEDD9-209ENST00000504634 TIAM2Q8IVF5 1701 aa16.15■□□□□ 0.18
NEDD9-209ENST00000504634 FAM177BA6PVY3 158 aa16.14■□□□□ 0.17
NEDD9-209ENST00000504634 NPR1P16066 1061 aa16.14■□□□□ 0.17
NEDD9-209ENST00000504634 CREBZFQ9NS37 354 aa16.14■□□□□ 0.17
NEDD9-209ENST00000504634 MKRN1Q9UHC7 482 aaKnown RBP16.14■□□□□ 0.17
NEDD9-209ENST00000504634 NIP7Q9Y221 180 aaKnown RBP eCLIP16.14■□□□□ 0.17
NEDD9-209ENST00000504634 POTEIP0CG38 1075 aa16.13■□□□□ 0.17
NEDD9-209ENST00000504634 POTEJP0CG39 1038 aa16.13■□□□□ 0.17
NEDD9-209ENST00000504634 GTF2E1P29083 439 aaPredicted RBP16.13■□□□□ 0.17
NEDD9-209ENST00000504634 DCTN1Q14203 1278 aa16.12■□□□□ 0.17
NEDD9-209ENST00000504634 LDHDQ86WU2 507 aa16.12■□□□□ 0.17
NEDD9-209ENST00000504634 ZNF277Q9NRM2 450 aaPredicted RBP16.12■□□□□ 0.17
NEDD9-209ENST00000504634 VIRMAQ69YN4 1812 aaKnown RBP16.11■□□□□ 0.17
NEDD9-209ENST00000504634 NBPF26B4DH59 902 aa16.11■□□□□ 0.17
NEDD9-209ENST00000504634 HTATSF1O43719 755 aaKnown RBP16.11■□□□□ 0.17
NEDD9-209ENST00000504634 FKBP4Q02790 459 aaKnown RBP eCLIP16.11■□□□□ 0.17
NEDD9-209ENST00000504634 NBPF10Q6P3W6 841 aaKnown RBP16.11■□□□□ 0.17
NEDD9-209ENST00000504634 RTKN2Q8IZC4 609 aa16.11■□□□□ 0.17
NEDD9-209ENST00000504634 NBPF15Q8N660 670 aa16.11■□□□□ 0.17
NEDD9-209ENST00000504634 C7orf43Q8WVR3 580 aa16.11■□□□□ 0.17
NEDD9-209ENST00000504634 TAF1DQ9H5J8 278 aaPredicted RBP16.11■□□□□ 0.17
NEDD9-209ENST00000504634 ANKRD31Q8N7Z5 1873 aa16.11■□□□□ 0.17
NEDD9-209ENST00000504634 COL11A2P13942 1736 aaPredicted RBP16.11■□□□□ 0.17
NEDD9-209ENST00000504634 PPP2R1AP30153 589 aa16.1■□□□□ 0.17
NEDD9-209ENST00000504634 ALDH1B1P30837 517 aa16.1■□□□□ 0.17
NEDD9-209ENST00000504634 EAPPQ56P03 285 aaPredicted RBP16.1■□□□□ 0.17
NEDD9-209ENST00000504634 L3MBTL3Q96JM7 780 aaPredicted RBP16.1■□□□□ 0.17
NEDD9-209ENST00000504634 CLEC11AQ9Y240 323 aa16.1■□□□□ 0.17
NEDD9-209ENST00000504634 KLRG2A4D1S0 409 aaPredicted RBP16.09■□□□□ 0.17
NEDD9-209ENST00000504634 RGL2O15211 777 aa16.09■□□□□ 0.17
NEDD9-209ENST00000504634 NEFMP07197 916 aa16.09■□□□□ 0.17
NEDD9-209ENST00000504634 TAF7Q15545 349 aaPredicted RBP16.09■□□□□ 0.17
NEDD9-209ENST00000504634 OLFM4Q6UX06 510 aa16.09■□□□□ 0.17
NEDD9-209ENST00000504634 SIPA1L3O60292 1781 aaPredicted RBP16.08■□□□□ 0.17
NEDD9-209ENST00000504634 NGEFQ8N5V2 710 aa16.08■□□□□ 0.16
NEDD9-209ENST00000504634 MIS18AQ9NYP9 233 aa16.08■□□□□ 0.16
NEDD9-209ENST00000504634 HACL1Q9UJ83 578 aa16.08■□□□□ 0.16
NEDD9-209ENST00000504634 ZNF541Q9H0D2 1346 aa16.08■□□□□ 0.16
NEDD9-209ENST00000504634 SLC34A2O95436 690 aa16.07■□□□□ 0.16
NEDD9-209ENST00000504634 IARSP41252 1262 aaKnown RBP16.07■□□□□ 0.16
NEDD9-209ENST00000504634 HLFQ16534 295 aa16.07■□□□□ 0.16
NEDD9-209ENST00000504634 SYNE4Q8N205 404 aa16.07■□□□□ 0.16
NEDD9-209ENST00000504634 SLX4Q8IY92 1834 aa16.07■□□□□ 0.16
NEDD9-209ENST00000504634 FER1L6Q2WGJ9 1857 aa16.07■□□□□ 0.16
NEDD9-209ENST00000504634 PASKQ96RG2 1323 aa16.06■□□□□ 0.16
NEDD9-209ENST00000504634 TMEM88BA6NKF7 163 aa16.06■□□□□ 0.16
NEDD9-209ENST00000504634 EPHX2P34913 555 aa16.06■□□□□ 0.16
NEDD9-209ENST00000504634 KIF6Q6ZMV9 814 aa16.06■□□□□ 0.16
NEDD9-209ENST00000504634 PNISRQ8TF01 805 aaKnown RBP16.06■□□□□ 0.16
NEDD9-209ENST00000504634 JDP2Q8WYK2 163 aa16.06■□□□□ 0.16
NEDD9-209ENST00000504634 AIDAQ96BJ3 306 aa16.06■□□□□ 0.16
NEDD9-209ENST00000504634 NYXQ9GZU5 481 aa16.06■□□□□ 0.16
NEDD9-209ENST00000504634 CCDC88AQ3V6T2 1871 aa16.05■□□□□ 0.16
NEDD9-209ENST00000504634 CNTNAP1P78357 1384 aa16.05■□□□□ 0.16
NEDD9-209ENST00000504634 PNMA8AQ86V59 439 aaPredicted RBP16.05■□□□□ 0.16
NEDD9-209ENST00000504634 RRP7AQ9Y3A4 280 aaKnown RBP16.05■□□□□ 0.16
NEDD9-209ENST00000504634 RNF123Q5XPI4 1314 aa16.04■□□□□ 0.16
NEDD9-209ENST00000504634 NUTM1Q86Y26 1132 aa16.04■□□□□ 0.16
NEDD9-209ENST00000504634 RPGRQ92834 1020 aaKnown RBP16.04■□□□□ 0.16
NEDD9-209ENST00000504634 BCORQ6W2J9 1755 aa16.04■□□□□ 0.16
NEDD9-209ENST00000504634 ERVV-1B6SEH8 477 aa16.03■□□□□ 0.16
NEDD9-209ENST00000504634 FZD9O00144 591 aa16.03■□□□□ 0.16
NEDD9-209ENST00000504634 ITGBL1O95965 494 aaPredicted RBP16.03■□□□□ 0.16
NEDD9-209ENST00000504634 EIF6P56537 245 aaKnown RBP16.03■□□□□ 0.16
NEDD9-209ENST00000504634 CC2D2BQ6DHV5 1058 aa16.03■□□□□ 0.16
NEDD9-209ENST00000504634 GPC2Q8N158 579 aa16.03■□□□□ 0.16
NEDD9-209ENST00000504634 MAP3K15Q6ZN16 1313 aa16.02■□□□□ 0.16
NEDD9-209ENST00000504634 FOXN1O15353 648 aa16.02■□□□□ 0.16
NEDD9-209ENST00000504634 MYL6BP14649 208 aa16.02■□□□□ 0.16
NEDD9-209ENST00000504634 GPTP24298 496 aa16.02■□□□□ 0.16
NEDD9-209ENST00000504634 VEGFBP49765 207 aa16.02■□□□□ 0.16
NEDD9-209ENST00000504634 CNTROBQ8N137 903 aa16.02■□□□□ 0.16
NEDD9-209ENST00000504634 PSMD1Q99460 953 aa16.02■□□□□ 0.16
NEDD9-209ENST00000504634 GJA3Q9Y6H8 435 aa16.02■□□□□ 0.16
NEDD9-209ENST00000504634 DICER1Q9UPY3 1922 aaKnown RBP16.02■□□□□ 0.15
NEDD9-209ENST00000504634 ABCC12Q96J65 1359 aa16.01■□□□□ 0.15
NEDD9-209ENST00000504634 LMOD1P29536 600 aaPredicted RBP16.01■□□□□ 0.15
NEDD9-209ENST00000504634 CTCFP49711 727 aaPredicted RBP16.01■□□□□ 0.15
NEDD9-209ENST00000504634 CRY2Q49AN0 593 aa16.01■□□□□ 0.15
NEDD9-209ENST00000504634 MAP1SQ66K74 1059 aaPredicted RBP16.01■□□□□ 0.15
NEDD9-209ENST00000504634 TTLL7Q6ZT98 887 aa16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms