RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 DNAJC10Q8IXB1 793 aa10.22□□□□□ -0.77
USP54-215ENST00000497106 KCNJ4P48050 445 aa10.22□□□□□ -0.77
USP54-215ENST00000497106 DIAPH3Q9NSV4 1193 aa10.22□□□□□ -0.77
USP54-215ENST00000497106 HSPA1LP34931 641 aa10.22□□□□□ -0.77
USP54-215ENST00000497106 IL27Q8NEV9 243 aa10.22□□□□□ -0.77
USP54-215ENST00000497106 PIGBQ92521 554 aa10.22□□□□□ -0.77
USP54-215ENST00000497106 QTRT2Q9H974 415 aaKnown RBP10.22□□□□□ -0.77
USP54-215ENST00000497106 AOX1Q06278 1338 aa10.21□□□□□ -0.77
USP54-215ENST00000497106 FAM196AQ6ZSG2 479 aa10.21□□□□□ -0.77
USP54-215ENST00000497106 NYXQ9GZU5 481 aa10.21□□□□□ -0.77
USP54-215ENST00000497106 ANO8Q9HCE9 1232 aaPredicted RBP10.21□□□□□ -0.77
USP54-215ENST00000497106 TRMT112Q9UI30 125 aaKnown RBP10.21□□□□□ -0.77
USP54-215ENST00000497106 GLRX3O76003 335 aaKnown RBP10.21□□□□□ -0.77
USP54-215ENST00000497106 MX1P20591 662 aa10.21□□□□□ -0.77
USP54-215ENST00000497106 RILPL2Q969X0 211 aa10.21□□□□□ -0.77
USP54-215ENST00000497106 GJD4Q96KN9 370 aaPredicted RBP10.21□□□□□ -0.77
USP54-215ENST00000497106 USP16Q9Y5T5 823 aa10.21□□□□□ -0.77
USP54-215ENST00000497106 GCKRQ14397 625 aa10.21□□□□□ -0.78
USP54-215ENST00000497106 UBE3BQ7Z3V4 1068 aa10.21□□□□□ -0.78
USP54-215ENST00000497106 CEP126Q9P2H0 1117 aa10.21□□□□□ -0.78
USP54-215ENST00000497106 IFIT5Q13325 482 aaKnown RBP10.21□□□□□ -0.78
USP54-215ENST00000497106 NEURL1BA8MQ27 555 aa10.2□□□□□ -0.78
USP54-215ENST00000497106 ERVV-1B6SEH8 477 aa10.2□□□□□ -0.78
USP54-215ENST00000497106 FNBP4Q8N3X1 1017 aaPredicted RBP10.2□□□□□ -0.78
USP54-215ENST00000497106 RGS12O14924 1447 aa10.2□□□□□ -0.78
USP54-215ENST00000497106 ANKRD18BA2A2Z9 1011 aa10.2□□□□□ -0.78
USP54-215ENST00000497106 EXOC6BQ9Y2D4 811 aa10.2□□□□□ -0.78
USP54-215ENST00000497106 RTCBQ9Y3I0 505 aaKnown RBP10.2□□□□□ -0.78
USP54-215ENST00000497106 LOC102724428A0A0B4J2F2 783 aa10.2□□□□□ -0.78
USP54-215ENST00000497106 SIK1P57059 783 aa10.2□□□□□ -0.78
USP54-215ENST00000497106 TCIRG1Q13488 830 aa10.2□□□□□ -0.78
USP54-215ENST00000497106 ATG3Q9NT62 314 aa10.2□□□□□ -0.78
USP54-215ENST00000497106 MAP3K15Q6ZN16 1313 aa10.2□□□□□ -0.78
USP54-215ENST00000497106 IGHMBP2P38935 993 aaKnown RBP10.19□□□□□ -0.78
USP54-215ENST00000497106 CCDC158Q5M9N0 1113 aa10.19□□□□□ -0.78
USP54-215ENST00000497106 CNNM1Q9NRU3 951 aa10.19□□□□□ -0.78
USP54-215ENST00000497106 CCNL1Q9UK58 526 aaPredicted RBP10.19□□□□□ -0.78
USP54-215ENST00000497106 UTP14AQ9BVJ6 771 aaKnown RBP10.19□□□□□ -0.78
USP54-215ENST00000497106 ASAP1Q9ULH1 1129 aa10.19□□□□□ -0.78
USP54-215ENST00000497106 PALLDQ8WX93 1383 aa10.19□□□□□ -0.78
USP54-215ENST00000497106 A1BGP04217 495 aa10.19□□□□□ -0.78
USP54-215ENST00000497106 AACSQ86V21 672 aa10.19□□□□□ -0.78
USP54-215ENST00000497106 IPO9Q96P70 1041 aaKnown RBP10.19□□□□□ -0.78
USP54-215ENST00000497106 USP44Q9H0E7 712 aa10.19□□□□□ -0.78
USP54-215ENST00000497106 TTC41PQ6P2S7 1318 aa10.19□□□□□ -0.78
USP54-215ENST00000497106 ATP5J2-PTCD1G3V325 749 aa10.19□□□□□ -0.78
USP54-215ENST00000497106 RHPN1Q8TCX5 695 aa10.19□□□□□ -0.78
USP54-215ENST00000497106 SSH3Q8TE77 659 aa10.19□□□□□ -0.78
USP54-215ENST00000497106 LRRC37A3O60309 1634 aa10.19□□□□□ -0.78
USP54-215ENST00000497106 MRC1P22897 1456 aa10.19□□□□□ -0.78
USP54-215ENST00000497106 CWF19L2Q2TBE0 894 aaKnown RBP10.18□□□□□ -0.78
USP54-215ENST00000497106 FBXO3Q9UK99 471 aa10.18□□□□□ -0.78
USP54-215ENST00000497106 COL22A1Q8NFW1 1626 aaPredicted RBP10.18□□□□□ -0.78
USP54-215ENST00000497106 IL15P40933 162 aaPredicted RBP10.18□□□□□ -0.78
USP54-215ENST00000497106 NOP58Q9Y2X3 529 aaKnown RBP10.18□□□□□ -0.78
USP54-215ENST00000497106 CCDC152Q4G0S7 254 aa10.18□□□□□ -0.78
USP54-215ENST00000497106 CDC5LQ99459 802 aaKnown RBP10.18□□□□□ -0.78
USP54-215ENST00000497106 MPHOSPH8Q99549 860 aa10.18□□□□□ -0.78
USP54-215ENST00000497106 MSH5O43196 834 aa10.18□□□□□ -0.78
USP54-215ENST00000497106 RFC4P35249 363 aa10.18□□□□□ -0.78
USP54-215ENST00000497106 DLG5Q8TDM6 1919 aa10.17□□□□□ -0.78
USP54-215ENST00000497106 RBM6P78332 1123 aaKnown RBP10.17□□□□□ -0.78
USP54-215ENST00000497106 TTC22Q5TAA0 569 aa10.17□□□□□ -0.78
USP54-215ENST00000497106 SEPT12Q8IYM1 358 aa10.17□□□□□ -0.78
USP54-215ENST00000497106 CHMP4CQ96CF2 233 aa10.17□□□□□ -0.78
USP54-215ENST00000497106 ST18O60284 1047 aa10.17□□□□□ -0.78
USP54-215ENST00000497106 NEUROD6Q96NK8 337 aa10.17□□□□□ -0.78
USP54-215ENST00000497106 GNL3LQ9NVN8 582 aaKnown RBP10.17□□□□□ -0.78
USP54-215ENST00000497106 XIRP1Q702N8 1843 aaKnown RBP10.17□□□□□ -0.78
USP54-215ENST00000497106 PCCAP05165 728 aaPredicted RBP10.17□□□□□ -0.78
USP54-215ENST00000497106 PROSER3Q2NL68 480 aa10.17□□□□□ -0.78
USP54-215ENST00000497106 KRT27Q7Z3Y8 459 aa10.17□□□□□ -0.78
USP54-215ENST00000497106 MARF1Q9Y4F3 1742 aaKnown RBP10.17□□□□□ -0.78
USP54-215ENST00000497106 ECHDC1Q9NTX5 307 aa10.17□□□□□ -0.78
USP54-215ENST00000497106 RNF20Q5VTR2 975 aa10.16□□□□□ -0.78
USP54-215ENST00000497106 ZSCAN25Q6NSZ9 544 aa10.16□□□□□ -0.78
USP54-215ENST00000497106 GIGYF2Q6Y7W6 1299 aaKnown RBP10.16□□□□□ -0.78
USP54-215ENST00000497106 C22orf23Q9BZE7 217 aa10.16□□□□□ -0.78
USP54-215ENST00000497106 TTC39AQ5SRH9 613 aa10.16□□□□□ -0.78
USP54-215ENST00000497106 FLAD1Q8NFF5 587 aa10.16□□□□□ -0.78
USP54-215ENST00000497106 SIL1Q9H173 461 aa10.16□□□□□ -0.78
USP54-215ENST00000497106 BICC1Q9H694 974 aaKnown RBP10.16□□□□□ -0.78
USP54-215ENST00000497106 SLIT2O94813 1529 aa10.16□□□□□ -0.78
USP54-215ENST00000497106 IBTKQ9P2D0 1353 aaPredicted RBP10.16□□□□□ -0.78
USP54-215ENST00000497106 RGL2O15211 777 aa10.16□□□□□ -0.78
USP54-215ENST00000497106 MTX1Q13505 466 aa10.16□□□□□ -0.78
USP54-215ENST00000497106 DISP2A7MBM2 1401 aa10.16□□□□□ -0.78
USP54-215ENST00000497106 COL16A1Q07092 1604 aaPredicted RBP10.15□□□□□ -0.78
USP54-215ENST00000497106 SETDB2Q96T68 719 aa10.15□□□□□ -0.78
USP54-215ENST00000497106 SH3TC1Q8TE82 1336 aa10.15□□□□□ -0.78
USP54-215ENST00000497106 PDE8AO60658 829 aa10.15□□□□□ -0.78
USP54-215ENST00000497106 GPTP24298 496 aa10.15□□□□□ -0.78
USP54-215ENST00000497106 RXRBP28702 533 aa10.15□□□□□ -0.78
USP54-215ENST00000497106 CRKLP46109 303 aaKnown RBP10.15□□□□□ -0.78
USP54-215ENST00000497106 TRAPPC3LQ5T215 181 aa10.15□□□□□ -0.78
USP54-215ENST00000497106 LMBR1LQ6UX01 489 aa10.15□□□□□ -0.78
USP54-215ENST00000497106 SUCLG2Q96I99 432 aa10.15□□□□□ -0.78
USP54-215ENST00000497106 NIP7Q9Y221 180 aaKnown RBP eCLIP10.15□□□□□ -0.78
USP54-215ENST00000497106 ADCY9O60503 1353 aa10.15□□□□□ -0.78
USP54-215ENST00000497106 BCL9O00512 1426 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms