RNA–Protein interactions for RNA: ENST00000493732.5

NPHP3-209, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,933 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-209ENST00000493732 SCN11AQ9UI33 1791 aa11.68□□□□□ -0.54
NPHP3-209ENST00000493732 AK9Q5TCS8 1911 aa11.67□□□□□ -0.54
NPHP3-209ENST00000493732 UNC5CLQ8IV45 518 aa11.67□□□□□ -0.54
NPHP3-209ENST00000493732 ANP32BQ92688 251 aaKnown RBP11.67□□□□□ -0.54
NPHP3-209ENST00000493732 PROSER3Q2NL68 480 aa11.66□□□□□ -0.54
NPHP3-209ENST00000493732 MCTP1Q6DN14 999 aa11.66□□□□□ -0.54
NPHP3-209ENST00000493732 FMNL2Q96PY5 1086 aa11.66□□□□□ -0.54
NPHP3-209ENST00000493732 MRC1P22897 1456 aa11.66□□□□□ -0.54
NPHP3-209ENST00000493732 MBD3O95983 291 aa11.66□□□□□ -0.54
NPHP3-209ENST00000493732 PDIA4P13667 645 aaKnown RBP11.66□□□□□ -0.54
NPHP3-209ENST00000493732 PDIA6Q15084 440 aa11.66□□□□□ -0.54
NPHP3-209ENST00000493732 ZGPATQ8N5A5 531 aaKnown RBP11.66□□□□□ -0.54
NPHP3-209ENST00000493732 METTL22Q9BUU2 404 aaPredicted RBP11.66□□□□□ -0.54
NPHP3-209ENST00000493732 ERBB4Q15303 1308 aa11.66□□□□□ -0.54
NPHP3-209ENST00000493732 COL15A1P39059 1388 aa11.66□□□□□ -0.54
NPHP3-209ENST00000493732 CRYBG1Q9Y4K1 1723 aa11.66□□□□□ -0.54
NPHP3-209ENST00000493732 RGPD5Q99666 1765 aa11.65□□□□□ -0.54
NPHP3-209ENST00000493732 KDM6AO15550 1401 aaPredicted RBP11.65□□□□□ -0.54
NPHP3-209ENST00000493732 SPATA31A3Q5VYP0 1347 aa11.65□□□□□ -0.54
NPHP3-209ENST00000493732 PLEKHG5O94827 1062 aa11.65□□□□□ -0.54
NPHP3-209ENST00000493732 BRD1O95696 1058 aa11.65□□□□□ -0.54
NPHP3-209ENST00000493732 CWF19L2Q2TBE0 894 aaKnown RBP11.65□□□□□ -0.54
NPHP3-209ENST00000493732 NFATC2IPQ8NCF5 419 aa11.65□□□□□ -0.54
NPHP3-209ENST00000493732 LMBRD1Q9NUN5 540 aa11.65□□□□□ -0.54
NPHP3-209ENST00000493732 PALD1Q9ULE6 856 aa11.65□□□□□ -0.54
NPHP3-209ENST00000493732 COL18A1P39060 1754 aa11.65□□□□□ -0.54
NPHP3-209ENST00000493732 WDR33Q9C0J8 1336 aaKnown RBP11.64□□□□□ -0.55
NPHP3-209ENST00000493732 ZNF445P59923 1031 aa11.64□□□□□ -0.55
NPHP3-209ENST00000493732 ANKRD13DQ6ZTN6 518 aa11.64□□□□□ -0.55
NPHP3-209ENST00000493732 TM6SF1Q9BZW5 370 aa11.64□□□□□ -0.55
NPHP3-209ENST00000493732 LSG1Q9H089 658 aaKnown RBP11.64□□□□□ -0.55
NPHP3-209ENST00000493732 NEURL1BA8MQ27 555 aa11.64□□□□□ -0.55
NPHP3-209ENST00000493732 AIMP1Q12904 312 aaKnown RBP11.64□□□□□ -0.55
NPHP3-209ENST00000493732 GCKRQ14397 625 aa11.64□□□□□ -0.55
NPHP3-209ENST00000493732 AACSQ86V21 672 aa11.64□□□□□ -0.55
NPHP3-209ENST00000493732 SUCLG2Q96I99 432 aa11.64□□□□□ -0.55
NPHP3-209ENST00000493732 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.64□□□□□ -0.55
NPHP3-209ENST00000493732 ZKSCAN1P17029 563 aaPredicted RBP11.63□□□□□ -0.55
NPHP3-209ENST00000493732 CABP4P57796 275 aa11.63□□□□□ -0.55
NPHP3-209ENST00000493732 CWC27Q6UX04 472 aaKnown RBP11.63□□□□□ -0.55
NPHP3-209ENST00000493732 TICAM2Q86XR7 235 aa11.63□□□□□ -0.55
NPHP3-209ENST00000493732 XAGE3Q8WTP9 111 aa11.63□□□□□ -0.55
NPHP3-209ENST00000493732 ZSCAN31Q96LW9 406 aaPredicted RBP11.63□□□□□ -0.55
NPHP3-209ENST00000493732 BICC1Q9H694 974 aaKnown RBP11.63□□□□□ -0.55
NPHP3-209ENST00000493732 SNX14Q9Y5W7 946 aa11.63□□□□□ -0.55
NPHP3-209ENST00000493732 MEGF6O75095 1541 aa11.63□□□□□ -0.55
NPHP3-209ENST00000493732 PKD1L3Q7Z443 1732 aa11.63□□□□□ -0.55
NPHP3-209ENST00000493732 IGKV5-2P06315 115 aa11.62□□□□□ -0.55
NPHP3-209ENST00000493732 COPS6Q7L5N1 327 aa11.62□□□□□ -0.55
NPHP3-209ENST00000493732 KCNB2Q92953 911 aa11.62□□□□□ -0.55
NPHP3-209ENST00000493732 ZNF496Q96IT1 587 aaPredicted RBP11.62□□□□□ -0.55
NPHP3-209ENST00000493732 LIMCH1Q9UPQ0 1083 aa11.62□□□□□ -0.55
NPHP3-209ENST00000493732 ZDHHC9Q9Y397 364 aa11.62□□□□□ -0.55
NPHP3-209ENST00000493732 PRAMEF22A3QJZ6 481 aa11.62□□□□□ -0.55
NPHP3-209ENST00000493732 MAP4K4O95819 1239 aaPredicted RBP11.62□□□□□ -0.55
NPHP3-209ENST00000493732 NCLP19338 710 aaKnown RBP11.62□□□□□ -0.55
NPHP3-209ENST00000493732 RNF20Q5VTR2 975 aa11.62□□□□□ -0.55
NPHP3-209ENST00000493732 KLHL34Q8N239 644 aa11.62□□□□□ -0.55
NPHP3-209ENST00000493732 SYAP1Q96A49 352 aaPredicted RBP11.62□□□□□ -0.55
NPHP3-209ENST00000493732 TRIM44Q96DX7 344 aaPredicted RBP11.62□□□□□ -0.55
NPHP3-209ENST00000493732 UPF3BQ9BZI7 483 aaKnown RBP11.62□□□□□ -0.55
NPHP3-209ENST00000493732 COPRSQ9NQ92 184 aa11.62□□□□□ -0.55
NPHP3-209ENST00000493732 RTN4Q9NQC3 1192 aaKnown RBP11.62□□□□□ -0.55
NPHP3-209ENST00000493732 SH2B1Q9NRF2 756 aaPredicted RBP11.62□□□□□ -0.55
NPHP3-209ENST00000493732 SNRKQ9NRH2 765 aa11.62□□□□□ -0.55
NPHP3-209ENST00000493732 ATP6V1DQ9Y5K8 247 aa11.62□□□□□ -0.55
NPHP3-209ENST00000493732 PARP4Q9UKK3 1724 aaKnown RBP11.61□□□□□ -0.55
NPHP3-209ENST00000493732 PRPF40AO75400 957 aaKnown RBP11.61□□□□□ -0.55
NPHP3-209ENST00000493732 PSMA5P28066 241 aa11.61□□□□□ -0.55
NPHP3-209ENST00000493732 CCDC173Q0VFZ6 552 aa11.61□□□□□ -0.55
NPHP3-209ENST00000493732 SLC39A6Q13433 755 aa11.61□□□□□ -0.55
NPHP3-209ENST00000493732 VPS53Q5VIR6 699 aa11.61□□□□□ -0.55
NPHP3-209ENST00000493732 KAZALD1Q96I82 304 aa11.61□□□□□ -0.55
NPHP3-209ENST00000493732 MYD88Q99836 296 aa11.61□□□□□ -0.55
NPHP3-209ENST00000493732 PCDH11XQ9BZA7 1347 aa11.61□□□□□ -0.55
NPHP3-209ENST00000493732 PCDH11YQ9BZA8 1340 aa11.61□□□□□ -0.55
NPHP3-209ENST00000493732 ERVV-2B6SEH9 535 aa11.6□□□□□ -0.55
NPHP3-209ENST00000493732 CYP27B1O15528 508 aa11.6□□□□□ -0.55
NPHP3-209ENST00000493732 SASH1O94885 1247 aa11.6□□□□□ -0.55
NPHP3-209ENST00000493732 MYL6BP14649 208 aa11.6□□□□□ -0.55
NPHP3-209ENST00000493732 PKP1Q13835 747 aa11.6□□□□□ -0.55
NPHP3-209ENST00000493732 PLBD2Q8NHP8 589 aa11.6□□□□□ -0.55
NPHP3-209ENST00000493732 TTC14Q96N46 770 aa11.6□□□□□ -0.55
NPHP3-209ENST00000493732 ARXQ96QS3 562 aa11.6□□□□□ -0.55
NPHP3-209ENST00000493732 PA2G4Q9UQ80 394 aaKnown RBP11.6□□□□□ -0.55
NPHP3-209ENST00000493732 CYP46A1Q9Y6A2 500 aa11.6□□□□□ -0.55
NPHP3-209ENST00000493732 RFX7Q2KHR2 1363 aa11.6□□□□□ -0.55
NPHP3-209ENST00000493732 RABL6Q3YEC7 729 aaPredicted RBP11.6□□□□□ -0.55
NPHP3-209ENST00000493732 CCDC171Q6TFL3 1326 aa11.59□□□□□ -0.55
NPHP3-209ENST00000493732 PHF14O94880 888 aa11.59□□□□□ -0.55
NPHP3-209ENST00000493732 NASPP49321 788 aaPredicted RBP11.59□□□□□ -0.55
NPHP3-209ENST00000493732 ANKRD1Q15327 319 aa11.59□□□□□ -0.55
NPHP3-209ENST00000493732 CSPP1Q1MSJ5 1256 aa11.59□□□□□ -0.55
NPHP3-209ENST00000493732 ZSCAN23Q3MJ62 389 aa11.59□□□□□ -0.55
NPHP3-209ENST00000493732 CAVIN1Q6NZI2 390 aaKnown RBP11.59□□□□□ -0.55
NPHP3-209ENST00000493732 GAS2L3Q86XJ1 694 aa11.59□□□□□ -0.55
NPHP3-209ENST00000493732 EAF2Q96CJ1 260 aaPredicted RBP11.59□□□□□ -0.55
NPHP3-209ENST00000493732 PANK2Q9BZ23 570 aa11.59□□□□□ -0.55
NPHP3-209ENST00000493732 IL25Q9H293 177 aa11.59□□□□□ -0.55
NPHP3-209ENST00000493732 ZSWIM6Q9HCJ5 1215 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms