RNA–Protein interactions for RNA: ENST00000493674.5

VPS52-220, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 878 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-220ENST00000493674 COL24A1Q17RW2 1714 aa16.02■□□□□ 0.15
VPS52-220ENST00000493674 DDX58O95786 925 aaKnown RBP16.01■□□□□ 0.15
VPS52-220ENST00000493674 PIP4K2AP48426 406 aaPredicted RBP16.01■□□□□ 0.15
VPS52-220ENST00000493674 BEND3Q5T5X7 828 aa16.01■□□□□ 0.15
VPS52-220ENST00000493674 B4GALNT3Q6L9W6 998 aa16.01■□□□□ 0.15
VPS52-220ENST00000493674 COPS6Q7L5N1 327 aa16.01■□□□□ 0.15
VPS52-220ENST00000493674 KDM2BQ8NHM5 1336 aa16■□□□□ 0.15
VPS52-220ENST00000493674 CNTNAP4Q9C0A0 1308 aa16■□□□□ 0.15
VPS52-220ENST00000493674 TRIM37O94972 964 aa16■□□□□ 0.15
VPS52-220ENST00000493674 ATP6V1AP38606 617 aa16■□□□□ 0.15
VPS52-220ENST00000493674 INTS5Q6P9B9 1019 aaKnown RBP16■□□□□ 0.15
VPS52-220ENST00000493674 CCDC136Q96JN2 1154 aa16■□□□□ 0.15
VPS52-220ENST00000493674 MAP3K2Q9Y2U5 619 aa16■□□□□ 0.15
VPS52-220ENST00000493674 IL6STP40189 918 aaPredicted RBP15.99■□□□□ 0.15
VPS52-220ENST00000493674 PLBD2Q8NHP8 589 aa15.99■□□□□ 0.15
VPS52-220ENST00000493674 CCDC87Q9NVE4 849 aa15.99■□□□□ 0.15
VPS52-220ENST00000493674 ZBTB1Q9Y2K1 713 aa15.99■□□□□ 0.15
VPS52-220ENST00000493674 PCDHB15Q9Y5E8 787 aa15.99■□□□□ 0.15
VPS52-220ENST00000493674 ALDH1L1O75891 902 aa15.98■□□□□ 0.15
VPS52-220ENST00000493674 CRKLP46109 303 aaKnown RBP15.98■□□□□ 0.15
VPS52-220ENST00000493674 SLC4A10Q6U841 1118 aa15.98■□□□□ 0.15
VPS52-220ENST00000493674 TTLL7Q6ZT98 887 aa15.98■□□□□ 0.15
VPS52-220ENST00000493674 ANKRD13DQ6ZTN6 518 aa15.98■□□□□ 0.15
VPS52-220ENST00000493674 LINC00116Q8NCU8 138 aa15.98■□□□□ 0.15
VPS52-220ENST00000493674 METTL22Q9BUU2 404 aaPredicted RBP15.98■□□□□ 0.15
VPS52-220ENST00000493674 DDX60Q8IY21 1712 aaKnown RBP15.97■□□□□ 0.15
VPS52-220ENST00000493674 EIF5P55010 431 aaKnown RBP15.97■□□□□ 0.15
VPS52-220ENST00000493674 AIMP1Q12904 312 aaKnown RBP15.97■□□□□ 0.15
VPS52-220ENST00000493674 LINS1Q8NG48 757 aa15.97■□□□□ 0.15
VPS52-220ENST00000493674 MEIS3Q99687 375 aa15.97■□□□□ 0.15
VPS52-220ENST00000493674 SRCIN1Q9C0H9 1055 aa15.97■□□□□ 0.15
VPS52-220ENST00000493674 PLSCR1O15162 318 aa15.96■□□□□ 0.15
VPS52-220ENST00000493674 IGKV5-2P06315 115 aa15.96■□□□□ 0.15
VPS52-220ENST00000493674 RC3H1Q5TC82 1133 aaKnown RBP15.96■□□□□ 0.15
VPS52-220ENST00000493674 DEFB132Q7Z7B7 95 aa15.96■□□□□ 0.15
VPS52-220ENST00000493674 USP44Q9H0E7 712 aa15.96■□□□□ 0.15
VPS52-220ENST00000493674 UTYO14607 1347 aa15.95■□□□□ 0.14
VPS52-220ENST00000493674 APBA3O96018 575 aa15.95■□□□□ 0.14
VPS52-220ENST00000493674 RIC3Q7Z5B4 369 aa15.95■□□□□ 0.14
VPS52-220ENST00000493674 MAP3K15Q6ZN16 1313 aa15.94■□□□□ 0.14
VPS52-220ENST00000493674 HDAC1Q13547 482 aaPredicted RBP15.94■□□□□ 0.14
VPS52-220ENST00000493674 CAMKK2Q96RR4 588 aa15.94■□□□□ 0.14
VPS52-220ENST00000493674 CCNL1Q9UK58 526 aaPredicted RBP15.94■□□□□ 0.14
VPS52-220ENST00000493674 COL15A1P39059 1388 aa15.94■□□□□ 0.14
VPS52-220ENST00000493674 NEURL1BA8MQ27 555 aa15.93■□□□□ 0.14
VPS52-220ENST00000493674 GNAI3P08754 354 aa15.93■□□□□ 0.14
VPS52-220ENST00000493674 EN1Q05925 392 aaPredicted RBP15.93■□□□□ 0.14
VPS52-220ENST00000493674 CENPQQ7L2Z9 268 aaPredicted RBP15.93■□□□□ 0.14
VPS52-220ENST00000493674 ERVV-1B6SEH8 477 aa15.92■□□□□ 0.14
VPS52-220ENST00000493674 IGHDP01880 384 aa15.92■□□□□ 0.14
VPS52-220ENST00000493674 NEXNQ0ZGT2 675 aa15.92■□□□□ 0.14
VPS52-220ENST00000493674 CWF19L2Q2TBE0 894 aaKnown RBP15.92■□□□□ 0.14
VPS52-220ENST00000493674 SLC27A3Q5K4L6 730 aa15.92■□□□□ 0.14
VPS52-220ENST00000493674 ISCA1Q9BUE6 129 aa15.92■□□□□ 0.14
VPS52-220ENST00000493674 LRRC4BQ9NT99 713 aa15.92■□□□□ 0.14
VPS52-220ENST00000493674 RGL2O15211 777 aa15.91■□□□□ 0.14
VPS52-220ENST00000493674 TRIM28Q13263 835 aaKnown RBP15.91■□□□□ 0.14
VPS52-220ENST00000493674 KIF6Q6ZMV9 814 aa15.91■□□□□ 0.14
VPS52-220ENST00000493674 SIRT2Q8IXJ6 389 aa15.91■□□□□ 0.14
VPS52-220ENST00000493674 MYD88Q99836 296 aa15.91■□□□□ 0.14
VPS52-220ENST00000493674 C1orf115Q9H7X2 142 aa15.91■□□□□ 0.14
VPS52-220ENST00000493674 GNAI2P04899 355 aa15.9■□□□□ 0.14
VPS52-220ENST00000493674 KCNQ4P56696 695 aa15.9■□□□□ 0.14
VPS52-220ENST00000493674 GCKRQ14397 625 aa15.9■□□□□ 0.14
VPS52-220ENST00000493674 EZH2Q15910 746 aaKnown RBP15.9■□□□□ 0.14
VPS52-220ENST00000493674 CEP85Q6P2H3 762 aa15.9■□□□□ 0.14
VPS52-220ENST00000493674 GIGYF2Q6Y7W6 1299 aaKnown RBP15.9■□□□□ 0.14
VPS52-220ENST00000493674 ANKRD44Q8N8A2 993 aa15.9■□□□□ 0.14
VPS52-220ENST00000493674 ZBTB3Q9H5J0 574 aa15.9■□□□□ 0.14
VPS52-220ENST00000493674 GRM8O00222 908 aa15.89■□□□□ 0.13
VPS52-220ENST00000493674 RPS6KA4O75676 772 aa15.89■□□□□ 0.13
VPS52-220ENST00000493674 CAMTA2O94983 1202 aa15.89■□□□□ 0.13
VPS52-220ENST00000493674 NBPF7P0C2Y1 421 aaPredicted RBP15.89■□□□□ 0.13
VPS52-220ENST00000493674 UBTFL1P0CB47 393 aaPredicted RBP15.89■□□□□ 0.13
VPS52-220ENST00000493674 CASP7P55210 303 aa15.89■□□□□ 0.13
VPS52-220ENST00000493674 TCIRG1Q13488 830 aa15.89■□□□□ 0.13
VPS52-220ENST00000493674 DZIP3Q86Y13 1208 aaKnown RBP15.89■□□□□ 0.13
VPS52-220ENST00000493674 RPAP2Q8IXW5 612 aaPredicted RBP15.89■□□□□ 0.13
VPS52-220ENST00000493674 PROM2Q8N271 834 aa15.89■□□□□ 0.13
VPS52-220ENST00000493674 LRP5O75197 1615 aa15.88■□□□□ 0.13
VPS52-220ENST00000493674 SMC5Q8IY18 1101 aa15.88■□□□□ 0.13
VPS52-220ENST00000493674 CCDC191Q8NCU4 936 aa15.88■□□□□ 0.13
VPS52-220ENST00000493674 RWDD1Q9H446 243 aaPredicted RBP15.88■□□□□ 0.13
VPS52-220ENST00000493674 A0A1B0GUL6 1792 aa15.87■□□□□ 0.13
VPS52-220ENST00000493674 SPEF2Q9C093 1822 aa15.87■□□□□ 0.13
VPS52-220ENST00000493674 A0A087WZG4 1122 aa15.87■□□□□ 0.13
VPS52-220ENST00000493674 MTX1Q13505 466 aa15.87■□□□□ 0.13
VPS52-220ENST00000493674 HLFQ16534 295 aa15.87■□□□□ 0.13
VPS52-220ENST00000493674 TXNRD1Q16881 649 aa15.87■□□□□ 0.13
VPS52-220ENST00000493674 HSP90AB3PQ58FF7 597 aa15.87■□□□□ 0.13
VPS52-220ENST00000493674 LRRFIP2Q9Y608 721 aaKnown RBP15.87■□□□□ 0.13
VPS52-220ENST00000493674 NRXN2Q9P2S2 1712 aa15.86■□□□□ 0.13
VPS52-220ENST00000493674 ATP5J2-PTCD1G3V325 749 aa15.86■□□□□ 0.13
VPS52-220ENST00000493674 H7C1W4 665 aa15.86■□□□□ 0.13
VPS52-220ENST00000493674 HMGB2P26583 209 aaKnown RBP15.86■□□□□ 0.13
VPS52-220ENST00000493674 ZNF34Q8IZ26 560 aa15.86■□□□□ 0.13
VPS52-220ENST00000493674 KAZALD1Q96I82 304 aa15.86■□□□□ 0.13
VPS52-220ENST00000493674 CWC25Q9NXE8 425 aaPredicted RBP15.86■□□□□ 0.13
VPS52-220ENST00000493674 ZNF330Q9Y3S2 320 aaPredicted RBP15.86■□□□□ 0.13
VPS52-220ENST00000493674 GNPATO15228 680 aa15.85■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms