RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 SETDB2Q96T68 719 aa19.34■□□□□ 0.69
PRPF40A-211ENST00000493468 WBP1LQ9NX94 342 aa19.34■□□□□ 0.69
PRPF40A-211ENST00000493468 ZNF790Q6PG37 636 aa19.33■□□□□ 0.68
PRPF40A-211ENST00000493468 CCDC24Q8N4L8 307 aa19.33■□□□□ 0.68
PRPF40A-211ENST00000493468 TBC1D2BQ9UPU7 963 aa19.33■□□□□ 0.68
PRPF40A-211ENST00000493468 THSD7BQ9C0I4 1608 aa19.33■□□□□ 0.68
PRPF40A-211ENST00000493468 CAMTA2O94983 1202 aa19.32■□□□□ 0.68
PRPF40A-211ENST00000493468 AMER1Q5JTC6 1135 aaPredicted RBP19.32■□□□□ 0.68
PRPF40A-211ENST00000493468 C7orf43Q8WVR3 580 aa19.32■□□□□ 0.68
PRPF40A-211ENST00000493468 CLSPNQ9HAW4 1339 aa19.31■□□□□ 0.68
PRPF40A-211ENST00000493468 RASSF10A6NK89 507 aa19.31■□□□□ 0.68
PRPF40A-211ENST00000493468 HSPA5P11021 654 aaKnown RBP19.31■□□□□ 0.68
PRPF40A-211ENST00000493468 CCDC93Q567U6 631 aa19.31■□□□□ 0.68
PRPF40A-211ENST00000493468 NPHP1O15259 732 aa19.3■□□□□ 0.68
PRPF40A-211ENST00000493468 LBX1P52954 281 aa19.29■□□□□ 0.68
PRPF40A-211ENST00000493468 FKBP4Q02790 459 aaKnown RBP eCLIP19.29■□□□□ 0.68
PRPF40A-211ENST00000493468 TEFQ10587 303 aa19.29■□□□□ 0.68
PRPF40A-211ENST00000493468 NPM2Q86SE8 214 aaKnown RBP19.29■□□□□ 0.68
PRPF40A-211ENST00000493468 FMNL2Q96PY5 1086 aa19.29■□□□□ 0.68
PRPF40A-211ENST00000493468 HACL1Q9UJ83 578 aa19.29■□□□□ 0.68
PRPF40A-211ENST00000493468 ZNF330Q9Y3S2 320 aaPredicted RBP19.29■□□□□ 0.68
PRPF40A-211ENST00000493468 ZNF541Q9H0D2 1346 aa19.28■□□□□ 0.68
PRPF40A-211ENST00000493468 DIAPH1O60610 1272 aaKnown RBP19.28■□□□□ 0.68
PRPF40A-211ENST00000493468 PNMA8AQ86V59 439 aaPredicted RBP19.28■□□□□ 0.68
PRPF40A-211ENST00000493468 KLRG2A4D1S0 409 aaPredicted RBP19.27■□□□□ 0.68
PRPF40A-211ENST00000493468 HSPA8P11142 646 aaKnown RBP19.27■□□□□ 0.68
PRPF40A-211ENST00000493468 NPR1P16066 1061 aa19.27■□□□□ 0.68
PRPF40A-211ENST00000493468 EPHX2P34913 555 aa19.27■□□□□ 0.68
PRPF40A-211ENST00000493468 EAPPQ56P03 285 aaPredicted RBP19.27■□□□□ 0.68
PRPF40A-211ENST00000493468 CLEC4GQ6UXB4 293 aa19.27■□□□□ 0.68
PRPF40A-211ENST00000493468 IL17REQ8NFR9 667 aa19.27■□□□□ 0.68
PRPF40A-211ENST00000493468 CEMIPQ8WUJ3 1361 aa19.27■□□□□ 0.68
PRPF40A-211ENST00000493468 COL3A1P02461 1466 aaPredicted RBP19.27■□□□□ 0.67
PRPF40A-211ENST00000493468 GNAT3A8MTJ3 354 aa19.26■□□□□ 0.67
PRPF40A-211ENST00000493468 RGL2O15211 777 aa19.26■□□□□ 0.67
PRPF40A-211ENST00000493468 A1BGP04217 495 aa19.26■□□□□ 0.67
PRPF40A-211ENST00000493468 MAP2K1Q02750 393 aaPredicted RBP19.26■□□□□ 0.67
PRPF40A-211ENST00000493468 DZIP3Q86Y13 1208 aaKnown RBP19.26■□□□□ 0.67
PRPF40A-211ENST00000493468 GAS2L2Q8NHY3 880 aa19.26■□□□□ 0.67
PRPF40A-211ENST00000493468 ABHD8Q96I13 439 aa19.26■□□□□ 0.67
PRPF40A-211ENST00000493468 DEFB115Q30KQ5 88 aa19.25■□□□□ 0.67
PRPF40A-211ENST00000493468 NBPF5PQ86XG9 351 aaPredicted RBP19.25■□□□□ 0.67
PRPF40A-211ENST00000493468 RTKN2Q8IZC4 609 aa19.25■□□□□ 0.67
PRPF40A-211ENST00000493468 FZD9O00144 591 aa19.24■□□□□ 0.67
PRPF40A-211ENST00000493468 CNTROBQ8N137 903 aa19.24■□□□□ 0.67
PRPF40A-211ENST00000493468 ZNF277Q9NRM2 450 aaPredicted RBP19.24■□□□□ 0.67
PRPF40A-211ENST00000493468 CLEC11AQ9Y240 323 aa19.24■□□□□ 0.67
PRPF40A-211ENST00000493468 ZNF652Q9Y2D9 606 aa19.24■□□□□ 0.67
PRPF40A-211ENST00000493468 TRPM7Q96QT4 1865 aa19.24■□□□□ 0.67
PRPF40A-211ENST00000493468 SNED1Q8TER0 1413 aa19.24■□□□□ 0.67
PRPF40A-211ENST00000493468 WDR33Q9C0J8 1336 aaKnown RBP19.24■□□□□ 0.67
PRPF40A-211ENST00000493468 GPC2Q8N158 579 aa19.23■□□□□ 0.67
PRPF40A-211ENST00000493468 RNF123Q5XPI4 1314 aa19.22■□□□□ 0.67
PRPF40A-211ENST00000493468 IARSP41252 1262 aaKnown RBP19.21■□□□□ 0.67
PRPF40A-211ENST00000493468 FAM161AQ3B820 660 aa19.21■□□□□ 0.67
PRPF40A-211ENST00000493468 MAP1SQ66K74 1059 aaPredicted RBP19.21■□□□□ 0.67
PRPF40A-211ENST00000493468 LTBP1Q14766 1721 aa19.2■□□□□ 0.66
PRPF40A-211ENST00000493468 TPTE2Q6XPS3 522 aa19.2■□□□□ 0.66
PRPF40A-211ENST00000493468 PSMD1Q99460 953 aa19.2■□□□□ 0.66
PRPF40A-211ENST00000493468 BTBD11A6QL63 1104 aa19.19■□□□□ 0.66
PRPF40A-211ENST00000493468 ALDH1B1P30837 517 aa19.19■□□□□ 0.66
PRPF40A-211ENST00000493468 TRIM26Q12899 539 aaPredicted RBP19.19■□□□□ 0.66
PRPF40A-211ENST00000493468 ABT1Q9ULW3 272 aaKnown RBP19.19■□□□□ 0.66
PRPF40A-211ENST00000493468 RGS19P49795 217 aa19.18■□□□□ 0.66
PRPF40A-211ENST00000493468 DDX21Q9NR30 783 aaKnown RBP eCLIP19.18■□□□□ 0.66
PRPF40A-211ENST00000493468 USP16Q9Y5T5 823 aa19.18■□□□□ 0.66
PRPF40A-211ENST00000493468 LAMB4A4D0S4 1761 aa19.17■□□□□ 0.66
PRPF40A-211ENST00000493468 KCNQ3O43525 872 aa19.17■□□□□ 0.66
PRPF40A-211ENST00000493468 OLFM4Q6UX06 510 aa19.17■□□□□ 0.66
PRPF40A-211ENST00000493468 SYNE4Q8N205 404 aa19.17■□□□□ 0.66
PRPF40A-211ENST00000493468 NIP7Q9Y221 180 aaKnown RBP eCLIP19.17■□□□□ 0.66
PRPF40A-211ENST00000493468 COL4A5P29400 1685 aa19.17■□□□□ 0.66
PRPF40A-211ENST00000493468 PER1O15534 1290 aaPredicted RBP19.16■□□□□ 0.66
PRPF40A-211ENST00000493468 ECE1P42892 770 aa19.16■□□□□ 0.66
PRPF40A-211ENST00000493468 CC2D2BQ6DHV5 1058 aa19.16■□□□□ 0.66
PRPF40A-211ENST00000493468 JDP2Q8WYK2 163 aa19.16■□□□□ 0.66
PRPF40A-211ENST00000493468 NPC1L1Q9UHC9 1359 aa19.16■□□□□ 0.66
PRPF40A-211ENST00000493468 U2SURPO15042 1029 aaKnown RBP19.15■□□□□ 0.66
PRPF40A-211ENST00000493468 SNRPA1P09661 255 aaKnown RBP19.15■□□□□ 0.66
PRPF40A-211ENST00000493468 CRY2Q49AN0 593 aa19.15■□□□□ 0.66
PRPF40A-211ENST00000493468 CAPNS2Q96L46 248 aa19.15■□□□□ 0.66
PRPF40A-211ENST00000493468 RIC1Q4ADV7 1423 aa19.15■□□□□ 0.66
PRPF40A-211ENST00000493468 LMOD1P29536 600 aaPredicted RBP19.14■□□□□ 0.65
PRPF40A-211ENST00000493468 PIP4K2AP48426 406 aaPredicted RBP19.14■□□□□ 0.65
PRPF40A-211ENST00000493468 EIF6P56537 245 aaKnown RBP19.14■□□□□ 0.65
PRPF40A-211ENST00000493468 MLLT1Q03111 559 aaPredicted RBP19.14■□□□□ 0.65
PRPF40A-211ENST00000493468 GRIPAP1Q4V328 841 aa19.14■□□□□ 0.65
PRPF40A-211ENST00000493468 BEGAINQ9BUH8 593 aa19.14■□□□□ 0.65
PRPF40A-211ENST00000493468 KIF7Q2M1P5 1343 aa19.14■□□□□ 0.65
PRPF40A-211ENST00000493468 NUP98P52948 1817 aa19.14■□□□□ 0.65
PRPF40A-211ENST00000493468 PCDH10Q9P2E7 1040 aa19.13■□□□□ 0.65
PRPF40A-211ENST00000493468 PRAMEF22A3QJZ6 481 aa19.12■□□□□ 0.65
PRPF40A-211ENST00000493468 NBPF26B4DH59 902 aa19.12■□□□□ 0.65
PRPF40A-211ENST00000493468 SCNN1DP51172 638 aa19.12■□□□□ 0.65
PRPF40A-211ENST00000493468 CC2D1BQ5T0F9 858 aaKnown RBP19.12■□□□□ 0.65
PRPF40A-211ENST00000493468 NBPF10Q6P3W6 841 aaKnown RBP19.12■□□□□ 0.65
PRPF40A-211ENST00000493468 NBPF15Q8N660 670 aa19.12■□□□□ 0.65
PRPF40A-211ENST00000493468 USP50Q70EL3 339 aaPredicted RBP19.11■□□□□ 0.65
PRPF40A-211ENST00000493468 GPR101Q96P66 508 aaPredicted RBP19.11■□□□□ 0.65
PRPF40A-211ENST00000493468 TLL2Q9Y6L7 1015 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms