RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 ARFGEF2Q9Y6D5 1785 aa25.84■■□□□ 1.73
CCDC88B-208ENST00000492980 STRN4Q9NRL3 753 aa25.84■■□□□ 1.73
CCDC88B-208ENST00000492980 USP42Q9H9J4 1324 aaKnown RBP25.83■■□□□ 1.73
CCDC88B-208ENST00000492980 ERVV-2B6SEH9 535 aa25.83■■□□□ 1.73
CCDC88B-208ENST00000492980 PIP4K2AP48426 406 aaPredicted RBP25.83■■□□□ 1.73
CCDC88B-208ENST00000492980 OS9Q13438 667 aaPredicted RBP25.83■■□□□ 1.73
CCDC88B-208ENST00000492980 ANKRD13DQ6ZTN6 518 aa25.83■■□□□ 1.73
CCDC88B-208ENST00000492980 MYD88Q99836 296 aa25.83■■□□□ 1.73
CCDC88B-208ENST00000492980 BICC1Q9H694 974 aaKnown RBP25.83■■□□□ 1.73
CCDC88B-208ENST00000492980 GCKRQ14397 625 aa25.82■■□□□ 1.72
CCDC88B-208ENST00000492980 GSE1Q14687 1217 aa25.82■■□□□ 1.72
CCDC88B-208ENST00000492980 PA2G4Q9UQ80 394 aaKnown RBP25.82■■□□□ 1.72
CCDC88B-208ENST00000492980 AFDNP55196 1824 aaKnown RBP25.82■■□□□ 1.72
CCDC88B-208ENST00000492980 KCPQ6ZWJ8 1503 aa25.81■■□□□ 1.72
CCDC88B-208ENST00000492980 ERC1Q8IUD2 1116 aa25.81■■□□□ 1.72
CCDC88B-208ENST00000492980 CIZ1Q9ULV3 898 aaPredicted RBP25.81■■□□□ 1.72
CCDC88B-208ENST00000492980 EVA1CP58658 441 aa25.8■■□□□ 1.72
CCDC88B-208ENST00000492980 ERBB4Q15303 1308 aa25.78■■□□□ 1.72
CCDC88B-208ENST00000492980 TTC41PQ6P2S7 1318 aa25.78■■□□□ 1.72
CCDC88B-208ENST00000492980 CLASRPQ8N2M8 674 aaKnown RBP25.78■■□□□ 1.72
CCDC88B-208ENST00000492980 TOGARAM1Q9Y4F4 1720 aa25.78■■□□□ 1.72
CCDC88B-208ENST00000492980 HSP90AA1P07900 732 aaKnown RBP25.77■■□□□ 1.72
CCDC88B-208ENST00000492980 DDX54Q8TDD1 881 aaKnown RBP25.77■■□□□ 1.72
CCDC88B-208ENST00000492980 MAP4K4O95819 1239 aaPredicted RBP25.76■■□□□ 1.71
CCDC88B-208ENST00000492980 MCM4P33991 863 aa25.76■■□□□ 1.71
CCDC88B-208ENST00000492980 TNS2Q63HR2 1409 aa25.76■■□□□ 1.71
CCDC88B-208ENST00000492980 NBPF26B4DH59 902 aa25.75■■□□□ 1.71
CCDC88B-208ENST00000492980 NBPF14Q5TI25 921 aa25.75■■□□□ 1.71
CCDC88B-208ENST00000492980 NBPF10Q6P3W6 841 aaKnown RBP25.75■■□□□ 1.71
CCDC88B-208ENST00000492980 NBPF15Q8N660 670 aa25.75■■□□□ 1.71
CCDC88B-208ENST00000492980 FOXD4L1Q9NU39 408 aa25.75■■□□□ 1.71
CCDC88B-208ENST00000492980 PLBD2Q8NHP8 589 aa25.75■■□□□ 1.71
CCDC88B-208ENST00000492980 ANO2Q9NQ90 1003 aa25.75■■□□□ 1.71
CCDC88B-208ENST00000492980 EPHA10Q5JZY3 1008 aa25.74■■□□□ 1.71
CCDC88B-208ENST00000492980 CNTROBQ8N137 903 aa25.74■■□□□ 1.71
CCDC88B-208ENST00000492980 NUP188Q5SRE5 1749 aa25.74■■□□□ 1.71
CCDC88B-208ENST00000492980 ST18O60284 1047 aa25.73■■□□□ 1.71
CCDC88B-208ENST00000492980 GLRX3O76003 335 aaKnown RBP25.73■■□□□ 1.71
CCDC88B-208ENST00000492980 SASH1O94885 1247 aa25.73■■□□□ 1.71
CCDC88B-208ENST00000492980 IL25Q9H293 177 aa25.73■■□□□ 1.71
CCDC88B-208ENST00000492980 G3BP1Q13283 466 aaKnown RBP eCLIP25.73■■□□□ 1.71
CCDC88B-208ENST00000492980 COL15A1P39059 1388 aa25.73■■□□□ 1.71
CCDC88B-208ENST00000492980 MCCP23508 829 aa25.72■■□□□ 1.71
CCDC88B-208ENST00000492980 ECHDC1Q9NTX5 307 aa25.72■■□□□ 1.71
CCDC88B-208ENST00000492980 IFIT2P09913 472 aaKnown RBP25.72■■□□□ 1.71
CCDC88B-208ENST00000492980 RAB3GAP1Q15042 981 aa25.72■■□□□ 1.71
CCDC88B-208ENST00000492980 COL14A1Q05707 1796 aaKnown RBP25.71■■□□□ 1.71
CCDC88B-208ENST00000492980 EPB41L2O43491 1005 aaKnown RBP25.71■■□□□ 1.71
CCDC88B-208ENST00000492980 ROBO1Q9Y6N7 1651 aa25.71■■□□□ 1.71
CCDC88B-208ENST00000492980 AACSQ86V21 672 aa25.7■■□□□ 1.71
CCDC88B-208ENST00000492980 GPATCH3Q96I76 525 aa25.7■■□□□ 1.71
CCDC88B-208ENST00000492980 BTG4Q9NY30 223 aa25.7■■□□□ 1.71
CCDC88B-208ENST00000492980 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.7■■□□□ 1.71
CCDC88B-208ENST00000492980 ATP5J2-PTCD1G3V325 749 aa25.7■■□□□ 1.7
CCDC88B-208ENST00000492980 PTCD1O75127 700 aaKnown RBP25.7■■□□□ 1.7
CCDC88B-208ENST00000492980 ANAPC15P60006 121 aa25.7■■□□□ 1.7
CCDC88B-208ENST00000492980 PALD1Q9ULE6 856 aa25.7■■□□□ 1.7
CCDC88B-208ENST00000492980 JARID2Q92833 1246 aaPredicted RBP25.69■■□□□ 1.7
CCDC88B-208ENST00000492980 TNPO1Q92973 898 aaKnown RBP25.69■■□□□ 1.7
CCDC88B-208ENST00000492980 IL17RAQ96F46 866 aa25.69■■□□□ 1.7
CCDC88B-208ENST00000492980 UBE3BQ7Z3V4 1068 aa25.69■■□□□ 1.7
CCDC88B-208ENST00000492980 SGSM2O43147 1006 aa25.68■■□□□ 1.7
CCDC88B-208ENST00000492980 RABL6Q3YEC7 729 aaPredicted RBP25.68■■□□□ 1.7
CCDC88B-208ENST00000492980 KLHDC4Q8TBB5 520 aa25.68■■□□□ 1.7
CCDC88B-208ENST00000492980 EAF2Q96CJ1 260 aaPredicted RBP25.68■■□□□ 1.7
CCDC88B-208ENST00000492980 SIL1Q9H173 461 aa25.68■■□□□ 1.7
CCDC88B-208ENST00000492980 COL22A1Q8NFW1 1626 aaPredicted RBP25.68■■□□□ 1.7
CCDC88B-208ENST00000492980 A1BGP04217 495 aa25.67■■□□□ 1.7
CCDC88B-208ENST00000492980 CASP7P55210 303 aa25.67■■□□□ 1.7
CCDC88B-208ENST00000492980 AHDC1Q5TGY3 1603 aaPredicted RBP25.67■■□□□ 1.7
CCDC88B-208ENST00000492980 A0A087WZG4 1122 aa25.67■■□□□ 1.7
CCDC88B-208ENST00000492980 TTLL7Q6ZT98 887 aa25.67■■□□□ 1.7
CCDC88B-208ENST00000492980 TJP1Q07157 1748 aa25.66■■□□□ 1.7
CCDC88B-208ENST00000492980 RFX5P48382 616 aaPredicted RBP25.66■■□□□ 1.7
CCDC88B-208ENST00000492980 COPRSQ9NQ92 184 aa25.66■■□□□ 1.7
CCDC88B-208ENST00000492980 COL16A1Q07092 1604 aaPredicted RBP25.66■■□□□ 1.7
CCDC88B-208ENST00000492980 TMOD3Q9NYL9 352 aa25.66■■□□□ 1.7
CCDC88B-208ENST00000492980 DISP2A7MBM2 1401 aa25.66■■□□□ 1.7
CCDC88B-208ENST00000492980 NEK4P51957 841 aa25.64■■□□□ 1.7
CCDC88B-208ENST00000492980 RAD50Q92878 1312 aa25.64■■□□□ 1.7
CCDC88B-208ENST00000492980 HSPA4P34932 840 aa25.64■■□□□ 1.69
CCDC88B-208ENST00000492980 PLCH1Q4KWH8 1693 aa25.64■■□□□ 1.69
CCDC88B-208ENST00000492980 DDX11L8A8MPP1 907 aa25.63■■□□□ 1.69
CCDC88B-208ENST00000492980 CCDC8Q9H0W5 538 aaPredicted RBP25.63■■□□□ 1.69
CCDC88B-208ENST00000492980 ITGB4P16144 1822 aa25.63■■□□□ 1.69
CCDC88B-208ENST00000492980 PTPN12Q05209 780 aaKnown RBP25.63■■□□□ 1.69
CCDC88B-208ENST00000492980 TLR7Q9NYK1 1049 aaKnown RBP25.63■■□□□ 1.69
CCDC88B-208ENST00000492980 H7C1W4 665 aa25.62■■□□□ 1.69
CCDC88B-208ENST00000492980 LSG1Q9H089 658 aaKnown RBP25.62■■□□□ 1.69
CCDC88B-208ENST00000492980 CWC27Q6UX04 472 aaKnown RBP25.61■■□□□ 1.69
CCDC88B-208ENST00000492980 EVI5LQ96CN4 794 aa25.61■■□□□ 1.69
CCDC88B-208ENST00000492980 GBP4Q96PP9 640 aa25.61■■□□□ 1.69
CCDC88B-208ENST00000492980 DIAPH3Q9NSV4 1193 aa25.61■■□□□ 1.69
CCDC88B-208ENST00000492980 MCM2P49736 904 aa25.6■■□□□ 1.69
CCDC88B-208ENST00000492980 CWC25Q9NXE8 425 aaPredicted RBP25.6■■□□□ 1.69
CCDC88B-208ENST00000492980 SSFA2P28290 1259 aa25.6■■□□□ 1.69
CCDC88B-208ENST00000492980 PIGBQ92521 554 aa25.6■■□□□ 1.69
CCDC88B-208ENST00000492980 WNK3Q9BYP7 1800 aa25.59■■□□□ 1.69
CCDC88B-208ENST00000492980 ZBTB3Q9H5J0 574 aa25.59■■□□□ 1.69
CCDC88B-208ENST00000492980 FOXO4P98177 505 aa25.58■■□□□ 1.69
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms