RNA–Protein interactions for RNA: ENST00000492692.1

CSMD3-206, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 2

Gene CSMD3, Length 1,830 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-206ENST00000492692 GBP6Q6ZN66 633 aa13.07□□□□□ -0.32
CSMD3-206ENST00000492692 ZNF777Q9ULD5 760 aaPredicted RBP13.07□□□□□ -0.32
CSMD3-206ENST00000492692 PHF8Q9UPP1 1060 aa13.07□□□□□ -0.32
CSMD3-206ENST00000492692 PCDHGA4Q9Y5G9 962 aa13.07□□□□□ -0.32
CSMD3-206ENST00000492692 ERBB3P21860 1342 aa13.07□□□□□ -0.32
CSMD3-206ENST00000492692 SNUPNO95149 360 aaKnown RBP13.06□□□□□ -0.32
CSMD3-206ENST00000492692 IMPDH2P12268 514 aa13.06□□□□□ -0.32
CSMD3-206ENST00000492692 MRPL12P52815 198 aaKnown RBP13.06□□□□□ -0.32
CSMD3-206ENST00000492692 DDR1Q08345 913 aa13.06□□□□□ -0.32
CSMD3-206ENST00000492692 RBM12BQ8IXT5 1001 aaKnown RBP13.06□□□□□ -0.32
CSMD3-206ENST00000492692 PIK3R5Q8WYR1 880 aa13.06□□□□□ -0.32
CSMD3-206ENST00000492692 ARGLU1Q9NWB6 273 aaPredicted RBP13.06□□□□□ -0.32
CSMD3-206ENST00000492692 ZNF215Q9UL58 517 aaPredicted RBP13.06□□□□□ -0.32
CSMD3-206ENST00000492692 CCDC171Q6TFL3 1326 aa13.06□□□□□ -0.32
CSMD3-206ENST00000492692 ATAD2Q6PL18 1390 aa13.06□□□□□ -0.32
CSMD3-206ENST00000492692 PRPF40AO75400 957 aaKnown RBP13.06□□□□□ -0.32
CSMD3-206ENST00000492692 SKILP12757 684 aa13.06□□□□□ -0.32
CSMD3-206ENST00000492692 MNAT1P51948 309 aa13.06□□□□□ -0.32
CSMD3-206ENST00000492692 TBC1D25Q3MII6 688 aa13.06□□□□□ -0.32
CSMD3-206ENST00000492692 GOLGA6CA6NDK9 693 aa13.05□□□□□ -0.32
CSMD3-206ENST00000492692 GOLGA6BA6NDN3 693 aa13.05□□□□□ -0.32
CSMD3-206ENST00000492692 APAF1O14727 1248 aa13.05□□□□□ -0.32
CSMD3-206ENST00000492692 GOLGA6DP0CG33 693 aa13.05□□□□□ -0.32
CSMD3-206ENST00000492692 PDIA5Q14554 519 aa13.05□□□□□ -0.32
CSMD3-206ENST00000492692 ELF2Q15723 593 aa13.05□□□□□ -0.32
CSMD3-206ENST00000492692 CADPS2Q86UW7 1296 aa13.05□□□□□ -0.32
CSMD3-206ENST00000492692 GAS2L2Q8NHY3 880 aa13.05□□□□□ -0.32
CSMD3-206ENST00000492692 BAG1Q99933 345 aaPredicted RBP13.05□□□□□ -0.32
CSMD3-206ENST00000492692 SLX1AQ9BQ83 275 aa13.05□□□□□ -0.32
CSMD3-206ENST00000492692 MAF1Q9H063 256 aa13.05□□□□□ -0.32
CSMD3-206ENST00000492692 GOLGA6AQ9NYA3 693 aa13.05□□□□□ -0.32
CSMD3-206ENST00000492692 GRIN2AQ12879 1464 aa13.05□□□□□ -0.32
CSMD3-206ENST00000492692 MAGI1Q96QZ7 1491 aaPredicted RBP13.05□□□□□ -0.32
CSMD3-206ENST00000492692 IFT140Q96RY7 1462 aa13.05□□□□□ -0.32
CSMD3-206ENST00000492692 KDM5AP29375 1690 aaKnown RBP13.05□□□□□ -0.32
CSMD3-206ENST00000492692 KIAA1210Q9ULL0 1709 aa13.05□□□□□ -0.32
CSMD3-206ENST00000492692 RTN2O75298 545 aa13.04□□□□□ -0.32
CSMD3-206ENST00000492692 CLCN6P51797 869 aa13.04□□□□□ -0.32
CSMD3-206ENST00000492692 CEP135Q66GS9 1140 aa13.04□□□□□ -0.32
CSMD3-206ENST00000492692 RPUSD2Q8IZ73 545 aaKnown RBP13.04□□□□□ -0.32
CSMD3-206ENST00000492692 CLIP2Q9UDT6 1046 aa13.04□□□□□ -0.32
CSMD3-206ENST00000492692 ZNF232Q9UNY5 417 aa13.04□□□□□ -0.32
CSMD3-206ENST00000492692 COG6Q9Y2V7 657 aa13.04□□□□□ -0.32
CSMD3-206ENST00000492692 ABCA8O94911 1581 aa13.04□□□□□ -0.32
CSMD3-206ENST00000492692 POLR3AO14802 1390 aaPredicted RBP13.04□□□□□ -0.32
CSMD3-206ENST00000492692 MADDQ8WXG6 1647 aa13.04□□□□□ -0.32
CSMD3-206ENST00000492692 DUOX2Q9NRD8 1548 aa13.04□□□□□ -0.32
CSMD3-206ENST00000492692 U2SURPO15042 1029 aaKnown RBP13.04□□□□□ -0.32
CSMD3-206ENST00000492692 NCAPG2Q86XI2 1143 aa13.04□□□□□ -0.32
CSMD3-206ENST00000492692 KCNB2Q92953 911 aa13.04□□□□□ -0.32
CSMD3-206ENST00000492692 HNRNPH1P31943 449 aaKnown RBP13.03□□□□□ -0.32
CSMD3-206ENST00000492692 FILIP1Q7Z7B0 1213 aa13.03□□□□□ -0.32
CSMD3-206ENST00000492692 KDRP35968 1356 aa13.03□□□□□ -0.32
CSMD3-206ENST00000492692 CDKL5O76039 1030 aa13.02□□□□□ -0.32
CSMD3-206ENST00000492692 OAS2P29728 719 aaKnown RBP13.02□□□□□ -0.32
CSMD3-206ENST00000492692 TMCO3Q6UWJ1 677 aa13.02□□□□□ -0.32
CSMD3-206ENST00000492692 RTF1Q92541 710 aaKnown RBP13.02□□□□□ -0.32
CSMD3-206ENST00000492692 AATKQ6ZMQ8 1374 aa13.02□□□□□ -0.32
CSMD3-206ENST00000492692 PLB1Q6P1J6 1458 aa13.02□□□□□ -0.33
CSMD3-206ENST00000492692 TTC37Q6PGP7 1564 aa13.02□□□□□ -0.33
CSMD3-206ENST00000492692 SPHKAPQ2M3C7 1700 aa13.02□□□□□ -0.33
CSMD3-206ENST00000492692 POLR3GO15318 223 aaPredicted RBP13.02□□□□□ -0.33
CSMD3-206ENST00000492692 GPTP24298 496 aa13.02□□□□□ -0.33
CSMD3-206ENST00000492692 RARSP54136 660 aaKnown RBP13.02□□□□□ -0.33
CSMD3-206ENST00000492692 WDR63Q8IWG1 891 aa13.02□□□□□ -0.33
CSMD3-206ENST00000492692 PANK1Q8TE04 598 aa13.02□□□□□ -0.33
CSMD3-206ENST00000492692 ZNF396Q96N95 335 aaPredicted RBP13.02□□□□□ -0.33
CSMD3-206ENST00000492692 SLC24A3Q9HC58 644 aa13.02□□□□□ -0.33
CSMD3-206ENST00000492692 KCND1Q9NSA2 647 aa13.02□□□□□ -0.33
CSMD3-206ENST00000492692 PECAM1P16284 738 aaPredicted RBP13.01□□□□□ -0.33
CSMD3-206ENST00000492692 PSMD2Q13200 908 aa13.01□□□□□ -0.33
CSMD3-206ENST00000492692 PREPLQ4J6C6 727 aaPredicted RBP13.01□□□□□ -0.33
CSMD3-206ENST00000492692 ANKRD45Q5TZF3 282 aa13.01□□□□□ -0.33
CSMD3-206ENST00000492692 SPTY2D1Q68D10 685 aaPredicted RBP13.01□□□□□ -0.33
CSMD3-206ENST00000492692 MICAL1Q8TDZ2 1067 aa13.01□□□□□ -0.33
CSMD3-206ENST00000492692 TCP11Q8WWU5 503 aa13.01□□□□□ -0.33
CSMD3-206ENST00000492692 DDX11Q96FC9 970 aa13.01□□□□□ -0.33
CSMD3-206ENST00000492692 THOC1Q96FV9 657 aaKnown RBP13.01□□□□□ -0.33
CSMD3-206ENST00000492692 THUMPD2Q9BTF0 503 aaKnown RBP13.01□□□□□ -0.33
CSMD3-206ENST00000492692 SRRTQ9BXP5 876 aaKnown RBP13.01□□□□□ -0.33
CSMD3-206ENST00000492692 EXOC6BQ9Y2D4 811 aa13.01□□□□□ -0.33
CSMD3-206ENST00000492692 PCDHB15Q9Y5E8 787 aa13.01□□□□□ -0.33
CSMD3-206ENST00000492692 PREX2Q70Z35 1606 aa13.01□□□□□ -0.33
CSMD3-206ENST00000492692 CARMIL2Q6F5E8 1435 aa13□□□□□ -0.33
CSMD3-206ENST00000492692 DZIP3Q86Y13 1208 aaKnown RBP13□□□□□ -0.33
CSMD3-206ENST00000492692 ANKRD18AQ8IVF6 992 aa13□□□□□ -0.33
CSMD3-206ENST00000492692 CTCFLQ8NI51 663 aaPredicted RBP13□□□□□ -0.33
CSMD3-206ENST00000492692 C16orf45Q96MC5 204 aaPredicted RBP13□□□□□ -0.33
CSMD3-206ENST00000492692 LZTS2Q9BRK4 669 aa13□□□□□ -0.33
CSMD3-206ENST00000492692 CRACR2AQ9BSW2 395 aa13□□□□□ -0.33
CSMD3-206ENST00000492692 SUN2Q9UH99 717 aa13□□□□□ -0.33
CSMD3-206ENST00000492692 BLOC1S6Q9UL45 172 aa13□□□□□ -0.33
CSMD3-206ENST00000492692 CEP152O94986 1710 aa13□□□□□ -0.33
CSMD3-206ENST00000492692 REREQ9P2R6 1566 aa13□□□□□ -0.33
CSMD3-206ENST00000492692 RDXP35241 583 aaKnown RBP12.99□□□□□ -0.33
CSMD3-206ENST00000492692 LRRC31Q6UY01 552 aa12.99□□□□□ -0.33
CSMD3-206ENST00000492692 L2HGDHQ9H9P8 463 aa12.99□□□□□ -0.33
CSMD3-206ENST00000492692 HOMER3Q9NSC5 361 aa12.99□□□□□ -0.33
CSMD3-206ENST00000492692 CEP126Q9P2H0 1117 aa12.99□□□□□ -0.33
CSMD3-206ENST00000492692 ADAM21Q9UKJ8 722 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms