RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 TNS4Q8IZW8 715 aa10.16□□□□□ -0.78
SCN1A-206ENST00000491429 ZNF232Q9UNY5 417 aa10.16□□□□□ -0.78
SCN1A-206ENST00000491429 ALAS2P22557 587 aa10.15□□□□□ -0.78
SCN1A-206ENST00000491429 SFSWAPQ12872 951 aaKnown RBP10.15□□□□□ -0.78
SCN1A-206ENST00000491429 NFATC2IPQ8NCF5 419 aa10.15□□□□□ -0.78
SCN1A-206ENST00000491429 SLC30A3Q99726 388 aa10.15□□□□□ -0.78
SCN1A-206ENST00000491429 LZTS3O60299 673 aaPredicted RBP10.14□□□□□ -0.79
SCN1A-206ENST00000491429 SIN3BO75182 1162 aa10.14□□□□□ -0.79
SCN1A-206ENST00000491429 USP17L5A8MUK1 530 aa10.13□□□□□ -0.79
SCN1A-206ENST00000491429 FAM229AH3BQW9 127 aa10.13□□□□□ -0.79
SCN1A-206ENST00000491429 SERTM1A2A2V5 107 aa10.12□□□□□ -0.79
SCN1A-206ENST00000491429 ADARB2-AS1A8MUL3 147 aa10.12□□□□□ -0.79
SCN1A-206ENST00000491429 M0R082 166 aa10.12□□□□□ -0.79
SCN1A-206ENST00000491429 COL9A3Q14050 684 aaPredicted RBP10.12□□□□□ -0.79
SCN1A-206ENST00000491429 C8orf86Q6ZUL3 223 aa10.12□□□□□ -0.79
SCN1A-206ENST00000491429 ZNF417Q8TAU3 575 aa10.12□□□□□ -0.79
SCN1A-206ENST00000491429 ZNF587Q96SQ5 575 aaPredicted RBP10.12□□□□□ -0.79
SCN1A-206ENST00000491429 KRTAP4-8Q9BYQ9 185 aa10.12□□□□□ -0.79
SCN1A-206ENST00000491429 NEUROD4Q9HD90 331 aa10.12□□□□□ -0.79
SCN1A-206ENST00000491429 KIAA1024Q9UPX6 916 aa10.12□□□□□ -0.79
SCN1A-206ENST00000491429 STARD13Q9Y3M8 1113 aa10.12□□□□□ -0.79
SCN1A-206ENST00000491429 RSPO4Q2I0M5 234 aaPredicted RBP10.11□□□□□ -0.79
SCN1A-206ENST00000491429 RAB44Q7Z6P3 723 aaPredicted RBP10.11□□□□□ -0.79
SCN1A-206ENST00000491429 RHPN1Q8TCX5 695 aa10.11□□□□□ -0.79
SCN1A-206ENST00000491429 POM121Q96HA1 1249 aa10.11□□□□□ -0.79
SCN1A-206ENST00000491429 ALBP02768 609 aa10.1□□□□□ -0.79
SCN1A-206ENST00000491429 PRRT3Q5FWE3 981 aa10.1□□□□□ -0.79
SCN1A-206ENST00000491429 TNFRSF25Q93038 417 aa10.1□□□□□ -0.79
SCN1A-206ENST00000491429 GPC6Q9Y625 555 aaPredicted RBP10.1□□□□□ -0.79
SCN1A-206ENST00000491429 SPDYE3A6NKU9 549 aa10.09□□□□□ -0.79
SCN1A-206ENST00000491429 SPEM2Q0P670 501 aa10.09□□□□□ -0.79
SCN1A-206ENST00000491429 ZMYM1Q5SVZ6 1142 aa10.09□□□□□ -0.79
SCN1A-206ENST00000491429 TPCN2Q8NHX9 752 aa10.09□□□□□ -0.79
SCN1A-206ENST00000491429 HSH2DQ96JZ2 352 aa10.09□□□□□ -0.79
SCN1A-206ENST00000491429 TPSG1Q9NRR2 321 aa10.09□□□□□ -0.79
SCN1A-206ENST00000491429 ZBTB7BO15156 539 aaPredicted RBP10.08□□□□□ -0.8
SCN1A-206ENST00000491429 MICALL1Q8N3F8 863 aa10.08□□□□□ -0.8
SCN1A-206ENST00000491429 TSPAN10Q9H1Z9 355 aaPredicted RBP10.08□□□□□ -0.8
SCN1A-206ENST00000491429 APBA3O96018 575 aa10.07□□□□□ -0.8
SCN1A-206ENST00000491429 ADH7P40394 386 aa10.07□□□□□ -0.8
SCN1A-206ENST00000491429 CLDN10P78369 228 aa10.07□□□□□ -0.8
SCN1A-206ENST00000491429 NKAPLQ5M9Q1 402 aa10.07□□□□□ -0.8
SCN1A-206ENST00000491429 PRDM6Q9NQX0 595 aa10.07□□□□□ -0.8
SCN1A-206ENST00000491429 HCN4Q9Y3Q4 1203 aa10.07□□□□□ -0.8
SCN1A-206ENST00000491429 POM121CA8CG34 1229 aa10.06□□□□□ -0.8
SCN1A-206ENST00000491429 PSMA6P60900 246 aaKnown RBP10.06□□□□□ -0.8
SCN1A-206ENST00000491429 FOXD4L6Q3SYB3 417 aaPredicted RBP10.06□□□□□ -0.8
SCN1A-206ENST00000491429 CCDC102BQ68D86 513 aa10.06□□□□□ -0.8
SCN1A-206ENST00000491429 FOXD4L3Q6VB84 417 aaPredicted RBP10.06□□□□□ -0.8
SCN1A-206ENST00000491429 TRIM50Q86XT4 487 aa10.06□□□□□ -0.8
SCN1A-206ENST00000491429 ZNF280CQ8ND82 737 aa10.06□□□□□ -0.8
SCN1A-206ENST00000491429 ADAMTS19Q8TE59 1207 aa10.06□□□□□ -0.8
SCN1A-206ENST00000491429 CEP63Q96MT8 703 aa10.06□□□□□ -0.8
SCN1A-206ENST00000491429 BRD7Q9NPI1 651 aa10.06□□□□□ -0.8
SCN1A-206ENST00000491429 NID1P14543 1247 aa10.05□□□□□ -0.8
SCN1A-206ENST00000491429 PHACTR1Q9C0D0 580 aa10.05□□□□□ -0.8
SCN1A-206ENST00000491429 USP17L3A6NCW0 530 aa10.04□□□□□ -0.8
SCN1A-206ENST00000491429 USP17L4A6NCW7 530 aa10.04□□□□□ -0.8
SCN1A-206ENST00000491429 SFI1A8K8P3 1242 aa10.04□□□□□ -0.8
SCN1A-206ENST00000491429 GRIK4Q16099 956 aa10.04□□□□□ -0.8
SCN1A-206ENST00000491429 C1orf53Q5VUE5 145 aa10.04□□□□□ -0.8
SCN1A-206ENST00000491429 USP17L2Q6R6M4 530 aa10.04□□□□□ -0.8
SCN1A-206ENST00000491429 USP17L1Q7RTZ2 530 aa10.04□□□□□ -0.8
SCN1A-206ENST00000491429 HIRAP54198 1017 aaPredicted RBP10.03□□□□□ -0.8
SCN1A-206ENST00000491429 TYRO3Q06418 890 aa10.03□□□□□ -0.8
SCN1A-206ENST00000491429 TRIM28Q13263 835 aaKnown RBP10.03□□□□□ -0.8
SCN1A-206ENST00000491429 POTEAQ6S8J7 498 aa10.03□□□□□ -0.8
SCN1A-206ENST00000491429 C20orf204Q6ZNR8 217 aa10.03□□□□□ -0.8
SCN1A-206ENST00000491429 PLEKHM2Q8IWE5 1019 aa10.03□□□□□ -0.8
SCN1A-206ENST00000491429 WWC1Q8IX03 1113 aa10.03□□□□□ -0.8
SCN1A-206ENST00000491429 UCN2Q96RP3 112 aa10.03□□□□□ -0.8
SCN1A-206ENST00000491429 DYRK3O43781 588 aa10.02□□□□□ -0.81
SCN1A-206ENST00000491429 ATP1A2P50993 1020 aa10.02□□□□□ -0.81
SCN1A-206ENST00000491429 KCNQ4P56696 695 aa10.02□□□□□ -0.81
SCN1A-206ENST00000491429 NEUROD1Q13562 356 aa10.02□□□□□ -0.81
SCN1A-206ENST00000491429 SUSD3Q96L08 255 aa10.02□□□□□ -0.81
SCN1A-206ENST00000491429 PSMG3-AS1Q96PY0 264 aa10.02□□□□□ -0.81
SCN1A-206ENST00000491429 KCNH4Q9UQ05 1017 aa10.02□□□□□ -0.81
SCN1A-206ENST00000491429 TSEN2Q8NCE0 465 aaKnown RBP10.01□□□□□ -0.81
SCN1A-206ENST00000491429 ANKIB1Q9P2G1 1089 aa10.01□□□□□ -0.81
SCN1A-206ENST00000491429 CHMP3Q9Y3E7 222 aa10.01□□□□□ -0.81
SCN1A-206ENST00000491429 OGFOD1Q8N543 542 aa10□□□□□ -0.81
SCN1A-206ENST00000491429 BHMTQ93088 406 aa10□□□□□ -0.81
SCN1A-206ENST00000491429 NACC1Q96RE7 527 aa10□□□□□ -0.81
SCN1A-206ENST00000491429 TBC1D8BQ0IIM8 1120 aa9.99□□□□□ -0.81
SCN1A-206ENST00000491429 SCO2A0A1W2PP80 73 aa9.98□□□□□ -0.81
SCN1A-206ENST00000491429 M0R2N6 131 aa9.98□□□□□ -0.81
SCN1A-206ENST00000491429 C21orf2O43822 256 aa9.98□□□□□ -0.81
SCN1A-206ENST00000491429 ATP9BO43861 1147 aa9.98□□□□□ -0.81
SCN1A-206ENST00000491429 PPP1R12BO60237 982 aaPredicted RBP9.98□□□□□ -0.81
SCN1A-206ENST00000491429 TRAPPC3LQ5T215 181 aa9.98□□□□□ -0.81
SCN1A-206ENST00000491429 HDGFL1Q5TGJ6 251 aa9.98□□□□□ -0.81
SCN1A-206ENST00000491429 LARGE2Q8N3Y3 721 aa9.98□□□□□ -0.81
SCN1A-206ENST00000491429 ZNF594Q96JF6 807 aaPredicted RBP9.98□□□□□ -0.81
SCN1A-206ENST00000491429 MKRN1Q9UHC7 482 aaKnown RBP9.98□□□□□ -0.81
SCN1A-206ENST00000491429 PALM3A6NDB9 673 aaPredicted RBP9.97□□□□□ -0.81
SCN1A-206ENST00000491429 RAD21O60216 631 aa9.97□□□□□ -0.81
SCN1A-206ENST00000491429 LILRB5O75023 590 aa9.97□□□□□ -0.81
SCN1A-206ENST00000491429 DKK1O94907 266 aa9.97□□□□□ -0.81
SCN1A-206ENST00000491429 ALDH16A1Q8IZ83 802 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms