RNA–Protein interactions for RNA: ENST00000489417.5

SND1-214, Transcript of staphylococcal nuclease and tudor domain containing 1, humanhuman

TSL 2

Gene SND1, Length 1,447 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SND1-214ENST00000489417 ZNF330Q9Y3S2 320 aaPredicted RBP26.28■■□□□ 1.8
SND1-214ENST00000489417 GNAI3P08754 354 aa26.27■■□□□ 1.8
SND1-214ENST00000489417 NEXNQ0ZGT2 675 aa26.27■■□□□ 1.8
SND1-214ENST00000489417 LINC00116Q8NCU8 138 aa26.27■■□□□ 1.8
SND1-214ENST00000489417 CCNL1Q9UK58 526 aaPredicted RBP26.27■■□□□ 1.8
SND1-214ENST00000489417 KDM2BQ8NHM5 1336 aa26.27■■□□□ 1.8
SND1-214ENST00000489417 NUP188Q5SRE5 1749 aa26.27■■□□□ 1.8
SND1-214ENST00000489417 KIF6Q6ZMV9 814 aa26.26■■□□□ 1.79
SND1-214ENST00000489417 CENPQQ7L2Z9 268 aaPredicted RBP26.26■■□□□ 1.79
SND1-214ENST00000489417 MYD88Q99836 296 aa26.26■■□□□ 1.79
SND1-214ENST00000489417 RWDD1Q9H446 243 aaPredicted RBP26.25■■□□□ 1.79
SND1-214ENST00000489417 IGHDP01880 384 aa26.24■■□□□ 1.79
SND1-214ENST00000489417 USP44Q9H0E7 712 aa26.24■■□□□ 1.79
SND1-214ENST00000489417 CNTNAP4Q9C0A0 1308 aa26.24■■□□□ 1.79
SND1-214ENST00000489417 IBTKQ9P2D0 1353 aaPredicted RBP26.24■■□□□ 1.79
SND1-214ENST00000489417 IGKV5-2P06315 115 aa26.23■■□□□ 1.79
SND1-214ENST00000489417 KCNQ4P56696 695 aa26.23■■□□□ 1.79
SND1-214ENST00000489417 CWF19L2Q2TBE0 894 aaKnown RBP26.23■■□□□ 1.79
SND1-214ENST00000489417 NPM2Q86SE8 214 aaKnown RBP26.23■■□□□ 1.79
SND1-214ENST00000489417 ZBTB3Q9H5J0 574 aa26.23■■□□□ 1.79
SND1-214ENST00000489417 EIF5P55010 431 aaKnown RBP26.22■■□□□ 1.79
SND1-214ENST00000489417 MAP3K15Q6ZN16 1313 aa26.22■■□□□ 1.79
SND1-214ENST00000489417 NEURL1BA8MQ27 555 aa26.22■■□□□ 1.79
SND1-214ENST00000489417 GNAI2P04899 355 aa26.22■■□□□ 1.79
SND1-214ENST00000489417 HDAC1Q13547 482 aaPredicted RBP26.22■■□□□ 1.79
SND1-214ENST00000489417 UBTFL1P0CB47 393 aaPredicted RBP26.21■■□□□ 1.79
SND1-214ENST00000489417 RC3H1Q5TC82 1133 aaKnown RBP26.21■■□□□ 1.79
SND1-214ENST00000489417 ARXQ96QS3 562 aa26.2■■□□□ 1.78
SND1-214ENST00000489417 MYH14Q7Z406 1995 aaKnown RBP26.19■■□□□ 1.78
SND1-214ENST00000489417 DZIP3Q86Y13 1208 aaKnown RBP26.19■■□□□ 1.78
SND1-214ENST00000489417 RPAP2Q8IXW5 612 aaPredicted RBP26.18■■□□□ 1.78
SND1-214ENST00000489417 ANKRD44Q8N8A2 993 aa26.18■■□□□ 1.78
SND1-214ENST00000489417 C9orf78Q9NZ63 289 aaPredicted RBP26.18■■□□□ 1.78
SND1-214ENST00000489417 TAF1LQ8IZX4 1826 aa26.17■■□□□ 1.78
SND1-214ENST00000489417 ATP5J2-PTCD1G3V325 749 aa26.17■■□□□ 1.78
SND1-214ENST00000489417 GCKRQ14397 625 aa26.17■■□□□ 1.78
SND1-214ENST00000489417 CEP85Q6P2H3 762 aa26.17■■□□□ 1.78
SND1-214ENST00000489417 COL15A1P39059 1388 aa26.17■■□□□ 1.78
SND1-214ENST00000489417 AFDNP55196 1824 aaKnown RBP26.17■■□□□ 1.78
SND1-214ENST00000489417 UTYO14607 1347 aa26.17■■□□□ 1.78
SND1-214ENST00000489417 ERVV-1B6SEH8 477 aa26.16■■□□□ 1.78
SND1-214ENST00000489417 GRM8O00222 908 aa26.16■■□□□ 1.78
SND1-214ENST00000489417 NBPF7P0C2Y1 421 aaPredicted RBP26.16■■□□□ 1.78
SND1-214ENST00000489417 SLC27A3Q5K4L6 730 aa26.16■■□□□ 1.78
SND1-214ENST00000489417 SIRT2Q8IXJ6 389 aa26.16■■□□□ 1.78
SND1-214ENST00000489417 LRRFIP2Q9Y608 721 aaKnown RBP26.16■■□□□ 1.78
SND1-214ENST00000489417 TCIRG1Q13488 830 aa26.15■■□□□ 1.78
SND1-214ENST00000489417 GIGYF2Q6Y7W6 1299 aaKnown RBP26.15■■□□□ 1.78
SND1-214ENST00000489417 TBC1D2BQ9UPU7 963 aa26.15■■□□□ 1.78
SND1-214ENST00000489417 HDAC5Q9UQL6 1122 aa26.15■■□□□ 1.78
SND1-214ENST00000489417 A0A087WZG4 1122 aa26.14■■□□□ 1.78
SND1-214ENST00000489417 ISCA1Q9BUE6 129 aa26.14■■□□□ 1.78
SND1-214ENST00000489417 LRRC4BQ9NT99 713 aa26.14■■□□□ 1.78
SND1-214ENST00000489417 C4BP0C0L5 1744 aa26.14■■□□□ 1.78
SND1-214ENST00000489417 RPS6KA4O75676 772 aa26.14■■□□□ 1.77
SND1-214ENST00000489417 HSP90AB3PQ58FF7 597 aa26.14■■□□□ 1.77
SND1-214ENST00000489417 TNS1Q9HBL0 1735 aaKnown RBP26.13■■□□□ 1.77
SND1-214ENST00000489417 APBA3O96018 575 aa26.13■■□□□ 1.77
SND1-214ENST00000489417 HLFQ16534 295 aa26.13■■□□□ 1.77
SND1-214ENST00000489417 CWC25Q9NXE8 425 aaPredicted RBP26.13■■□□□ 1.77
SND1-214ENST00000489417 PLSCR1O15162 318 aa26.12■■□□□ 1.77
SND1-214ENST00000489417 CCDC191Q8NCU4 936 aa26.12■■□□□ 1.77
SND1-214ENST00000489417 GNPATO15228 680 aa26.11■■□□□ 1.77
SND1-214ENST00000489417 TRIM28Q13263 835 aaKnown RBP26.11■■□□□ 1.77
SND1-214ENST00000489417 ANKRD36CQ5JPF3 1778 aa26.1■■□□□ 1.77
SND1-214ENST00000489417 HMMRO75330 724 aa26.1■■□□□ 1.77
SND1-214ENST00000489417 CAMTA2O94983 1202 aa26.1■■□□□ 1.77
SND1-214ENST00000489417 HMGB2P26583 209 aaKnown RBP26.1■■□□□ 1.77
SND1-214ENST00000489417 TXNRD1Q16881 649 aa26.1■■□□□ 1.77
SND1-214ENST00000489417 ATP8B2P98198 1209 aa26.09■■□□□ 1.77
SND1-214ENST00000489417 SMC5Q8IY18 1101 aa26.09■■□□□ 1.77
SND1-214ENST00000489417 AK7Q96M32 723 aa26.09■■□□□ 1.77
SND1-214ENST00000489417 RTCBQ9Y3I0 505 aaKnown RBP26.09■■□□□ 1.77
SND1-214ENST00000489417 BCORQ6W2J9 1755 aa26.09■■□□□ 1.77
SND1-214ENST00000489417 SUCLG2Q96I99 432 aa26.08■■□□□ 1.77
SND1-214ENST00000489417 PELP1Q8IZL8 1130 aaKnown RBP26.07■■□□□ 1.76
SND1-214ENST00000489417 PROM2Q8N271 834 aa26.07■■□□□ 1.76
SND1-214ENST00000489417 GCC1Q96CN9 775 aa26.07■■□□□ 1.76
SND1-214ENST00000489417 NUP98P52948 1817 aa26.07■■□□□ 1.76
SND1-214ENST00000489417 H7C1W4 665 aa26.06■■□□□ 1.76
SND1-214ENST00000489417 UBE3BQ7Z3V4 1068 aa26.06■■□□□ 1.76
SND1-214ENST00000489417 RGPD3A6NKT7 1758 aaPredicted RBP26.06■■□□□ 1.76
SND1-214ENST00000489417 RGPD4Q7Z3J3 1758 aa26.06■■□□□ 1.76
SND1-214ENST00000489417 CASP7P55210 303 aa26.05■■□□□ 1.76
SND1-214ENST00000489417 SCN7AQ01118 1682 aa26.05■■□□□ 1.76
SND1-214ENST00000489417 GPTP24298 496 aa26.05■■□□□ 1.76
SND1-214ENST00000489417 NLRP10Q86W26 655 aa26.05■■□□□ 1.76
SND1-214ENST00000489417 ZNF34Q8IZ26 560 aa26.05■■□□□ 1.76
SND1-214ENST00000489417 JARID2Q92833 1246 aaPredicted RBP26.05■■□□□ 1.76
SND1-214ENST00000489417 ZNF652Q9Y2D9 606 aa26.05■■□□□ 1.76
SND1-214ENST00000489417 PNMA6EA0A0J9YXQ4 647 aa26.04■■□□□ 1.76
SND1-214ENST00000489417 RGL2O15211 777 aa26.04■■□□□ 1.76
SND1-214ENST00000489417 MTX1Q13505 466 aa26.04■■□□□ 1.76
SND1-214ENST00000489417 KAZALD1Q96I82 304 aa26.04■■□□□ 1.76
SND1-214ENST00000489417 DCTPP1Q9H773 170 aa26.04■■□□□ 1.76
SND1-214ENST00000489417 PDZRN3Q9UPQ7 1066 aa26.04■■□□□ 1.76
SND1-214ENST00000489417 SMIM5Q71RC9 77 aa26.03■■□□□ 1.76
SND1-214ENST00000489417 PPP1R42Q7Z4L9 355 aa26.03■■□□□ 1.76
SND1-214ENST00000489417 SSH3Q8TE77 659 aa26.03■■□□□ 1.76
SND1-214ENST00000489417 NARFQ9UHQ1 456 aa26.03■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms