RNA–Protein interactions for RNA: ENST00000489261.1

ITSN1-231, Transcript of intersectin 1, human

TSL 1 (best)

Gene ITSN1, Length 1,108 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ITSN1-231	ENST00000489261	CAMKK2	Q96RR4	588 aa		13.4	□□□□□ -0.26
ITSN1-231	ENST00000489261	LRRCC1	Q9C099	1032 aa		13.4	□□□□□ -0.26
ITSN1-231	ENST00000489261	MAP3K2	Q9Y2U5	619 aa		13.4	□□□□□ -0.26
ITSN1-231	ENST00000489261	LRRFIP2	Q9Y608	721 aa	Known RBP	13.4	□□□□□ -0.26
ITSN1-231	ENST00000489261	ADCY9	O60503	1353 aa		13.4	□□□□□ -0.26
ITSN1-231	ENST00000489261	LRP5	O75197	1615 aa		13.39	□□□□□ -0.27
ITSN1-231	ENST00000489261	NEXN	Q0ZGT2	675 aa		13.39	□□□□□ -0.27
ITSN1-231	ENST00000489261	SLC39A6	Q13433	755 aa		13.39	□□□□□ -0.27
ITSN1-231	ENST00000489261	MTX1	Q13505	466 aa		13.39	□□□□□ -0.27
ITSN1-231	ENST00000489261	PDIA6	Q15084	440 aa		13.39	□□□□□ -0.27
ITSN1-231	ENST00000489261	CASC1	Q6TDU7	716 aa		13.39	□□□□□ -0.27
ITSN1-231	ENST00000489261	ZNF496	Q96IT1	587 aa	Predicted RBP	13.39	□□□□□ -0.27
ITSN1-231	ENST00000489261	UTY	O14607	1347 aa		13.39	□□□□□ -0.27
ITSN1-231	ENST00000489261	AOX1	Q06278	1338 aa		13.39	□□□□□ -0.27
ITSN1-231	ENST00000489261	EXOC5	O00471	708 aa		13.38	□□□□□ -0.27
ITSN1-231	ENST00000489261	RBM25	P49756	843 aa	Known RBP	13.38	□□□□□ -0.27
ITSN1-231	ENST00000489261	EZH2	Q15910	746 aa	Known RBP	13.38	□□□□□ -0.27
ITSN1-231	ENST00000489261	C9orf78	Q9NZ63	289 aa	Predicted RBP	13.38	□□□□□ -0.27
ITSN1-231	ENST00000489261	BTAF1	O14981	1849 aa		13.38	□□□□□ -0.27
ITSN1-231	ENST00000489261	APBA3	O96018	575 aa		13.37	□□□□□ -0.27
ITSN1-231	ENST00000489261	MFAP1	P55081	439 aa	Known RBP	13.37	□□□□□ -0.27
ITSN1-231	ENST00000489261	RIC3	Q7Z5B4	369 aa		13.37	□□□□□ -0.27
ITSN1-231	ENST00000489261	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.37	□□□□□ -0.27
ITSN1-231	ENST00000489261	STAP2	Q9UGK3	403 aa		13.37	□□□□□ -0.27
ITSN1-231	ENST00000489261	KAT6B	Q8WYB5	2073 aa		13.36	□□□□□ -0.27
ITSN1-231	ENST00000489261	DOT1L	Q8TEK3	1739 aa		13.36	□□□□□ -0.27
ITSN1-231	ENST00000489261	PNMA6E	A0A0J9YXQ4	647 aa		13.36	□□□□□ -0.27
ITSN1-231	ENST00000489261	ANKRD13D	Q6ZTN6	518 aa		13.36	□□□□□ -0.27
ITSN1-231	ENST00000489261	PPP1R42	Q7Z4L9	355 aa		13.36	□□□□□ -0.27
ITSN1-231	ENST00000489261	KIF1BP	Q96EK5	621 aa		13.36	□□□□□ -0.27
ITSN1-231	ENST00000489261	METTL22	Q9BUU2	404 aa	Predicted RBP	13.36	□□□□□ -0.27
ITSN1-231	ENST00000489261	PRAMEF22	A3QJZ6	481 aa		13.35	□□□□□ -0.27
ITSN1-231	ENST00000489261	ANXA1	P04083	346 aa		13.35	□□□□□ -0.27
ITSN1-231	ENST00000489261	PDE1A	P54750	535 aa		13.35	□□□□□ -0.27
ITSN1-231	ENST00000489261	PROSER3	Q2NL68	480 aa		13.35	□□□□□ -0.27
ITSN1-231	ENST00000489261	TBC1D9	Q6ZT07	1266 aa		13.35	□□□□□ -0.27
ITSN1-231	ENST00000489261	ERC1	Q8IUD2	1116 aa		13.35	□□□□□ -0.27
ITSN1-231	ENST00000489261	C16orf71	Q8IYS4	520 aa	Predicted RBP	13.35	□□□□□ -0.27
ITSN1-231	ENST00000489261	USP16	Q9Y5T5	823 aa		13.35	□□□□□ -0.27
ITSN1-231	ENST00000489261	GRM8	O00222	908 aa		13.34	□□□□□ -0.27
ITSN1-231	ENST00000489261	PLSCR1	O15162	318 aa		13.34	□□□□□ -0.27
ITSN1-231	ENST00000489261	SRGAP3	O43295	1099 aa		13.34	□□□□□ -0.27
ITSN1-231	ENST00000489261	SMARCA5	O60264	1052 aa	Predicted RBP	13.34	□□□□□ -0.27
ITSN1-231	ENST00000489261	SURF6	O75683	361 aa	Known RBP	13.34	□□□□□ -0.27
ITSN1-231	ENST00000489261	NBPF7	P0C2Y1	421 aa	Predicted RBP	13.34	□□□□□ -0.27
ITSN1-231	ENST00000489261	GSPT1	P15170	499 aa	Known RBP	13.34	□□□□□ -0.27
ITSN1-231	ENST00000489261	COPS6	Q7L5N1	327 aa		13.34	□□□□□ -0.27
ITSN1-231	ENST00000489261	VSIG10	Q8N0Z9	540 aa		13.34	□□□□□ -0.27
ITSN1-231	ENST00000489261	XAGE3	Q8WTP9	111 aa		13.34	□□□□□ -0.27
ITSN1-231	ENST00000489261	BCL11B	Q9C0K0	894 aa	Predicted RBP	13.34	□□□□□ -0.27
ITSN1-231	ENST00000489261	EXOC6B	Q9Y2D4	811 aa		13.34	□□□□□ -0.27
ITSN1-231	ENST00000489261	AIMP1	Q12904	312 aa	Known RBP	13.33	□□□□□ -0.28
ITSN1-231	ENST00000489261	PTF1A	Q7RTS3	328 aa		13.33	□□□□□ -0.28
ITSN1-231	ENST00000489261	LRP10	Q7Z4F1	713 aa		13.33	□□□□□ -0.28
ITSN1-231	ENST00000489261	IL27	Q8NEV9	243 aa		13.33	□□□□□ -0.28
ITSN1-231	ENST00000489261	PLBD2	Q8NHP8	589 aa		13.33	□□□□□ -0.28
ITSN1-231	ENST00000489261	DDX54	Q8TDD1	881 aa	Known RBP	13.33	□□□□□ -0.28
ITSN1-231	ENST00000489261	SALL3	Q9BXA9	1300 aa		13.33	□□□□□ -0.28
ITSN1-231	ENST00000489261	COL15A1	P39059	1388 aa		13.32	□□□□□ -0.28
ITSN1-231	ENST00000489261	SDS	P20132	328 aa		13.32	□□□□□ -0.28
ITSN1-231	ENST00000489261	MX1	P20591	662 aa		13.32	□□□□□ -0.28
ITSN1-231	ENST00000489261	RHPN1	Q8TCX5	695 aa		13.32	□□□□□ -0.28
ITSN1-231	ENST00000489261	SNX21	Q969T3	373 aa		13.32	□□□□□ -0.28
ITSN1-231	ENST00000489261	NEURL1B	A8MQ27	555 aa		13.31	□□□□□ -0.28
ITSN1-231	ENST00000489261	APBB1	O00213	710 aa		13.31	□□□□□ -0.28
ITSN1-231	ENST00000489261	EPB41L2	O43491	1005 aa	Known RBP	13.31	□□□□□ -0.28
ITSN1-231	ENST00000489261	REC8	O95072	547 aa		13.31	□□□□□ -0.28
ITSN1-231	ENST00000489261	MYL6B	P14649	208 aa		13.31	□□□□□ -0.28
ITSN1-231	ENST00000489261	GCKR	Q14397	625 aa		13.31	□□□□□ -0.28
ITSN1-231	ENST00000489261	TMOD3	Q9NYL9	352 aa		13.31	□□□□□ -0.28
ITSN1-231	ENST00000489261	PAPPA	Q13219	1627 aa		13.31	□□□□□ -0.28
ITSN1-231	ENST00000489261	LY75	O60449	1722 aa		13.3	□□□□□ -0.28
ITSN1-231	ENST00000489261	CASZ1	Q86V15	1759 aa		13.3	□□□□□ -0.28
ITSN1-231	ENST00000489261	PSD	A5PKW4	1024 aa	Predicted RBP	13.3	□□□□□ -0.28
ITSN1-231	ENST00000489261	IGKV5-2	P06315	115 aa		13.3	□□□□□ -0.28
ITSN1-231	ENST00000489261	ITGB4	P16144	1822 aa		13.29	□□□□□ -0.28
ITSN1-231	ENST00000489261	KCNQ2	O43526	872 aa		13.29	□□□□□ -0.28
ITSN1-231	ENST00000489261	CWF19L2	Q2TBE0	894 aa	Known RBP	13.29	□□□□□ -0.28
ITSN1-231	ENST00000489261	CLASRP	Q8N2M8	674 aa	Known RBP	13.29	□□□□□ -0.28
ITSN1-231	ENST00000489261	OTUD7A	Q8TE49	926 aa	Predicted RBP	13.29	□□□□□ -0.28
ITSN1-231	ENST00000489261	MYD88	Q99836	296 aa		13.29	□□□□□ -0.28
ITSN1-231	ENST00000489261	TOGARAM1	Q9Y4F4	1720 aa		13.29	□□□□□ -0.28
ITSN1-231	ENST00000489261	TTC41P	Q6P2S7	1318 aa		13.29	□□□□□ -0.28
ITSN1-231	ENST00000489261	ERC2	O15083	957 aa		13.28	□□□□□ -0.28
ITSN1-231	ENST00000489261	G3BP1	Q13283	466 aa	Known RBP eCLIP	13.28	□□□□□ -0.28
ITSN1-231	ENST00000489261	R3HDM1	Q15032	1099 aa	Known RBP	13.28	□□□□□ -0.28
ITSN1-231	ENST00000489261	HSCB	Q8IWL3	235 aa		13.28	□□□□□ -0.28
ITSN1-231	ENST00000489261	GPATCH3	Q96I76	525 aa		13.28	□□□□□ -0.28
ITSN1-231	ENST00000489261	SUCLG2	Q96I99	432 aa		13.28	□□□□□ -0.28
ITSN1-231	ENST00000489261	USP26	Q9BXU7	913 aa		13.28	□□□□□ -0.28
ITSN1-231	ENST00000489261	TBC1D2	Q9BYX2	928 aa		13.28	□□□□□ -0.28
ITSN1-231	ENST00000489261	USP42	Q9H9J4	1324 aa	Known RBP	13.28	□□□□□ -0.28
ITSN1-231	ENST00000489261	C5	P01031	1676 aa		13.28	□□□□□ -0.28
ITSN1-231	ENST00000489261	QSER1	Q2KHR3	1735 aa		13.27	□□□□□ -0.28
ITSN1-231	ENST00000489261	LAMB4	A4D0S4	1761 aa		13.27	□□□□□ -0.28
ITSN1-231	ENST00000489261	SLC4A3	P48751	1232 aa		13.27	□□□□□ -0.29
ITSN1-231	ENST00000489261	OS9	Q13438	667 aa	Predicted RBP	13.27	□□□□□ -0.29
ITSN1-231	ENST00000489261	PROM2	Q8N271	834 aa		13.27	□□□□□ -0.29
ITSN1-231	ENST00000489261	ACSBG1	Q96GR2	724 aa		13.27	□□□□□ -0.29
ITSN1-231	ENST00000489261	SRCAP	Q6ZRS2	3230 aa		13.26	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 29 ms