RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 MAP2K3P46734 347 aa9.79□□□□□ -0.84
PTPN4-212ENST00000488896 ALDH16A1Q8IZ83 802 aa9.79□□□□□ -0.84
PTPN4-212ENST00000488896 CCDC82Q8N4S0 544 aa9.79□□□□□ -0.84
PTPN4-212ENST00000488896 HSH2DQ96JZ2 352 aa9.79□□□□□ -0.84
PTPN4-212ENST00000488896 C2orf49Q9BVC5 232 aaPredicted RBP9.79□□□□□ -0.84
PTPN4-212ENST00000488896 ADAMTS8Q9UP79 889 aa9.79□□□□□ -0.84
PTPN4-212ENST00000488896 TNP2Q05952 138 aa9.78□□□□□ -0.84
PTPN4-212ENST00000488896 OXCT2Q9BYC2 517 aaPredicted RBP9.78□□□□□ -0.84
PTPN4-212ENST00000488896 HIRAP54198 1017 aaPredicted RBP9.77□□□□□ -0.85
PTPN4-212ENST00000488896 C1orf53Q5VUE5 145 aa9.77□□□□□ -0.85
PTPN4-212ENST00000488896 STK32AQ8WU08 396 aa9.77□□□□□ -0.85
PTPN4-212ENST00000488896 C7orf43Q8WVR3 580 aa9.77□□□□□ -0.85
PTPN4-212ENST00000488896 ZMIZ1Q9ULJ6 1067 aa9.77□□□□□ -0.85
PTPN4-212ENST00000488896 BCRP11274 1271 aa9.76□□□□□ -0.85
PTPN4-212ENST00000488896 IGFBP4P22692 258 aa9.76□□□□□ -0.85
PTPN4-212ENST00000488896 SRPK2P78362 688 aaKnown RBP9.76□□□□□ -0.85
PTPN4-212ENST00000488896 ZNF280CQ8ND82 737 aa9.76□□□□□ -0.85
PTPN4-212ENST00000488896 PRIMPOLQ96LW4 560 aa9.76□□□□□ -0.85
PTPN4-212ENST00000488896 C1orf115Q9H7X2 142 aa9.76□□□□□ -0.85
PTPN4-212ENST00000488896 STRN4Q9NRL3 753 aa9.76□□□□□ -0.85
PTPN4-212ENST00000488896 HCN2Q9UL51 889 aa9.76□□□□□ -0.85
PTPN4-212ENST00000488896 PRMT3O60678 531 aa9.75□□□□□ -0.85
PTPN4-212ENST00000488896 ARHGEF15O94989 841 aa9.75□□□□□ -0.85
PTPN4-212ENST00000488896 POTEAQ6S8J7 498 aa9.75□□□□□ -0.85
PTPN4-212ENST00000488896 STAG2Q8N3U4 1231 aa9.75□□□□□ -0.85
PTPN4-212ENST00000488896 VTI1AQ96AJ9 217 aa9.75□□□□□ -0.85
PTPN4-212ENST00000488896 PBXIP1Q96AQ6 731 aa9.75□□□□□ -0.85
PTPN4-212ENST00000488896 FAM157BP0CG42 384 aa9.74□□□□□ -0.85
PTPN4-212ENST00000488896 MARSP56192 900 aaKnown RBP9.74□□□□□ -0.85
PTPN4-212ENST00000488896 SAMD5Q5TGI4 173 aa9.74□□□□□ -0.85
PTPN4-212ENST00000488896 NEDD1Q8NHV4 660 aa9.74□□□□□ -0.85
PTPN4-212ENST00000488896 SUSD3Q96L08 255 aa9.74□□□□□ -0.85
PTPN4-212ENST00000488896 CEP63Q96MT8 703 aa9.74□□□□□ -0.85
PTPN4-212ENST00000488896 ENAMQ9NRM1 1142 aa9.74□□□□□ -0.85
PTPN4-212ENST00000488896 WEE1P30291 646 aa9.73□□□□□ -0.85
PTPN4-212ENST00000488896 MARK1Q9P0L2 795 aa9.73□□□□□ -0.85
PTPN4-212ENST00000488896 ANKIB1Q9P2G1 1089 aa9.73□□□□□ -0.85
PTPN4-212ENST00000488896 GGA1Q9UJY5 639 aa9.73□□□□□ -0.85
PTPN4-212ENST00000488896 PRR12Q9ULL5 1215 aa9.73□□□□□ -0.85
PTPN4-212ENST00000488896 GPC6Q9Y625 555 aaPredicted RBP9.73□□□□□ -0.85
PTPN4-212ENST00000488896 ATG7O95352 703 aa9.72□□□□□ -0.85
PTPN4-212ENST00000488896 SFSWAPQ12872 951 aaKnown RBP9.72□□□□□ -0.85
PTPN4-212ENST00000488896 ELOAQ14241 798 aaKnown RBP9.72□□□□□ -0.85
PTPN4-212ENST00000488896 GRIN2CQ14957 1233 aa9.72□□□□□ -0.85
PTPN4-212ENST00000488896 GALNT6Q8NCL4 622 aa9.72□□□□□ -0.85
PTPN4-212ENST00000488896 DNMT3AQ9Y6K1 912 aaPredicted RBP9.72□□□□□ -0.85
PTPN4-212ENST00000488896 NEURL1BA8MQ27 555 aa9.71□□□□□ -0.86
PTPN4-212ENST00000488896 EFSO43281 561 aa9.71□□□□□ -0.86
PTPN4-212ENST00000488896 OIP5O43482 229 aa9.71□□□□□ -0.86
PTPN4-212ENST00000488896 TMEM164Q5U3C3 297 aa9.71□□□□□ -0.86
PTPN4-212ENST00000488896 C1orf229Q6ZS94 237 aaPredicted RBP9.71□□□□□ -0.86
PTPN4-212ENST00000488896 ACIN1Q9UKV3 1341 aaKnown RBP9.71□□□□□ -0.86
PTPN4-212ENST00000488896 PCBP4P57723 403 aaKnown RBP9.7□□□□□ -0.86
PTPN4-212ENST00000488896 RTN1Q16799 776 aa9.7□□□□□ -0.86
PTPN4-212ENST00000488896 GOLGA6L1Q8N7Z2 621 aa9.7□□□□□ -0.86
PTPN4-212ENST00000488896 BRD7Q9NPI1 651 aa9.7□□□□□ -0.86
PTPN4-212ENST00000488896 KLK14Q9P0G3 267 aa9.7□□□□□ -0.86
PTPN4-212ENST00000488896 GDF2Q9UK05 429 aaPredicted RBP9.7□□□□□ -0.86
PTPN4-212ENST00000488896 FOXO3O43524 673 aa9.69□□□□□ -0.86
PTPN4-212ENST00000488896 FAM69CQ0P6D2 419 aa9.69□□□□□ -0.86
PTPN4-212ENST00000488896 SWI5Q1ZZU3 235 aa9.69□□□□□ -0.86
PTPN4-212ENST00000488896 EDARADDQ8WWZ3 215 aa9.69□□□□□ -0.86
PTPN4-212ENST00000488896 SHISA8B8ZZ34 492 aa9.68□□□□□ -0.86
PTPN4-212ENST00000488896 SUPT5HO00267 1087 aaKnown RBP9.68□□□□□ -0.86
PTPN4-212ENST00000488896 ARAFP10398 606 aa9.68□□□□□ -0.86
PTPN4-212ENST00000488896 AMPD1P23109 780 aa9.68□□□□□ -0.86
PTPN4-212ENST00000488896 FKBP5Q13451 457 aaPredicted RBP9.68□□□□□ -0.86
PTPN4-212ENST00000488896 FAM182BQ5T319 152 aa9.68□□□□□ -0.86
PTPN4-212ENST00000488896 TYRO3Q06418 890 aa9.67□□□□□ -0.86
PTPN4-212ENST00000488896 DGKZQ13574 1117 aa9.67□□□□□ -0.86
PTPN4-212ENST00000488896 LAMC2Q13753 1193 aa9.67□□□□□ -0.86
PTPN4-212ENST00000488896 BTLAQ7Z6A9 289 aa9.67□□□□□ -0.86
PTPN4-212ENST00000488896 RAB44Q7Z6P3 723 aaPredicted RBP9.67□□□□□ -0.86
PTPN4-212ENST00000488896 SLC30A3Q99726 388 aa9.67□□□□□ -0.86
PTPN4-212ENST00000488896 MKNK1Q9BUB5 465 aa9.67□□□□□ -0.86
PTPN4-212ENST00000488896 QTRT2Q9H974 415 aaKnown RBP9.67□□□□□ -0.86
PTPN4-212ENST00000488896 RRAGCQ9HB90 399 aa9.67□□□□□ -0.86
PTPN4-212ENST00000488896 ADH6P28332 368 aa9.66□□□□□ -0.86
PTPN4-212ENST00000488896 HIF1AQ16665 826 aa9.66□□□□□ -0.86
PTPN4-212ENST00000488896 KLF15Q9UIH9 416 aa9.66□□□□□ -0.86
PTPN4-212ENST00000488896 BCS1LQ9Y276 419 aa9.66□□□□□ -0.86
PTPN4-212ENST00000488896 CNTNAP5Q8WYK1 1306 aa9.65□□□□□ -0.86
PTPN4-212ENST00000488896 IRS1P35568 1242 aa9.65□□□□□ -0.86
PTPN4-212ENST00000488896 OCLNQ16625 522 aa9.65□□□□□ -0.86
PTPN4-212ENST00000488896 ZNF468Q5VIY5 522 aaPredicted RBP9.65□□□□□ -0.86
PTPN4-212ENST00000488896 SLCO4C1Q6ZQN7 724 aa9.65□□□□□ -0.86
PTPN4-212ENST00000488896 SYT9Q86SS6 491 aa9.65□□□□□ -0.86
PTPN4-212ENST00000488896 ARID3AQ99856 593 aa9.65□□□□□ -0.86
PTPN4-212ENST00000488896 KCNH4Q9UQ05 1017 aa9.65□□□□□ -0.86
PTPN4-212ENST00000488896 SPEM2Q0P670 501 aa9.64□□□□□ -0.87
PTPN4-212ENST00000488896 SCARF2Q96GP6 870 aaPredicted RBP9.64□□□□□ -0.87
PTPN4-212ENST00000488896 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.64□□□□□ -0.872e-6■■■■■ 96.1
PTPN4-212ENST00000488896 LRRC4BQ9NT99 713 aa9.64□□□□□ -0.87
PTPN4-212ENST00000488896 TGFBR3LH3BV60 316 aa9.63□□□□□ -0.87
PTPN4-212ENST00000488896 RNF225M0QZC1 329 aaPredicted RBP9.63□□□□□ -0.87
PTPN4-212ENST00000488896 EPXP11678 715 aa9.63□□□□□ -0.87
PTPN4-212ENST00000488896 CAPN12Q6ZSI9 719 aa9.63□□□□□ -0.87
PTPN4-212ENST00000488896 PODNQ7Z5L7 613 aa9.63□□□□□ -0.87
PTPN4-212ENST00000488896 FCHSD1Q86WN1 690 aa9.63□□□□□ -0.87
PTPN4-212ENST00000488896 TIMELESSQ9UNS1 1208 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms