RNA–Protein interactions for RNA: ENST00000488727.5

CCM2-216, Transcript of CCM2 scaffold protein, humanhuman

TSL 5

Gene CCM2, Length 1,719 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-216ENST00000488727 NPM2Q86SE8 214 aaKnown RBP24.72■■□□□ 1.55
CCM2-216ENST00000488727 XAGE3Q8WTP9 111 aa24.72■■□□□ 1.55
CCM2-216ENST00000488727 ARXQ96QS3 562 aa24.72■■□□□ 1.55
CCM2-216ENST00000488727 NARFQ9UHQ1 456 aa24.72■■□□□ 1.55
CCM2-216ENST00000488727 ZNF428Q96B54 188 aa24.71■■□□□ 1.55
CCM2-216ENST00000488727 CCDC136Q96JN2 1154 aa24.71■■□□□ 1.55
CCM2-216ENST00000488727 AIMP1Q12904 312 aaKnown RBP24.7■■□□□ 1.54
CCM2-216ENST00000488727 USPL1Q5W0Q7 1092 aa24.7■■□□□ 1.54
CCM2-216ENST00000488727 G2E3Q7L622 706 aa24.7■■□□□ 1.54
CCM2-216ENST00000488727 SSH1Q8WYL5 1049 aa24.7■■□□□ 1.54
CCM2-216ENST00000488727 CAMTA2O94983 1202 aa24.69■■□□□ 1.54
CCM2-216ENST00000488727 BCL2L13Q9BXK5 485 aa24.69■■□□□ 1.54
CCM2-216ENST00000488727 GYS1P13807 737 aa24.69■■□□□ 1.54
CCM2-216ENST00000488727 BCL2L12Q9HB09 334 aa24.69■■□□□ 1.54
CCM2-216ENST00000488727 NUP98P52948 1817 aa24.68■■□□□ 1.54
CCM2-216ENST00000488727 ZPR1O75312 459 aa24.68■■□□□ 1.54
CCM2-216ENST00000488727 RARSP54136 660 aaKnown RBP24.67■■□□□ 1.54
CCM2-216ENST00000488727 ALDH1L2Q3SY69 923 aa24.67■■□□□ 1.54
CCM2-216ENST00000488727 SLC16A10Q8TF71 515 aa24.67■■□□□ 1.54
CCM2-216ENST00000488727 COL24A1Q17RW2 1714 aa24.67■■□□□ 1.54
CCM2-216ENST00000488727 MAP3K15Q6ZN16 1313 aa24.67■■□□□ 1.54
CCM2-216ENST00000488727 ZBTB7AO95365 584 aa24.66■■□□□ 1.54
CCM2-216ENST00000488727 MRPL50Q8N5N7 158 aaKnown RBP24.66■■□□□ 1.54
CCM2-216ENST00000488727 ZBTB3Q9H5J0 574 aa24.66■■□□□ 1.54
CCM2-216ENST00000488727 ARFGEF2Q9Y6D5 1785 aa24.66■■□□□ 1.54
CCM2-216ENST00000488727 MSL1Q68DK7 614 aa24.66■■□□□ 1.54
CCM2-216ENST00000488727 KIF6Q6ZMV9 814 aa24.66■■□□□ 1.54
CCM2-216ENST00000488727 HLFQ16534 295 aa24.65■■□□□ 1.54
CCM2-216ENST00000488727 SMC4Q9NTJ3 1288 aa24.65■■□□□ 1.54
CCM2-216ENST00000488727 FLIIQ13045 1269 aa24.64■■□□□ 1.54
CCM2-216ENST00000488727 MTFR1LQ9H019 292 aa24.64■■□□□ 1.53
CCM2-216ENST00000488727 ERVV-1B6SEH8 477 aa24.63■■□□□ 1.53
CCM2-216ENST00000488727 ANKRD13DQ6ZTN6 518 aa24.63■■□□□ 1.53
CCM2-216ENST00000488727 EXOC6Q8TAG9 804 aa24.63■■□□□ 1.53
CCM2-216ENST00000488727 PLBD2Q8NHP8 589 aa24.62■■□□□ 1.53
CCM2-216ENST00000488727 ATF5Q9Y2D1 282 aaPredicted RBP24.62■■□□□ 1.53
CCM2-216ENST00000488727 ANKRD36CQ5JPF3 1778 aa24.62■■□□□ 1.53
CCM2-216ENST00000488727 BCAR3O75815 825 aa24.61■■□□□ 1.53
CCM2-216ENST00000488727 ADCY9O60503 1353 aa24.61■■□□□ 1.53
CCM2-216ENST00000488727 NLGN1Q8N2Q7 840 aa24.61■■□□□ 1.53
CCM2-216ENST00000488727 RGL2O15211 777 aa24.6■■□□□ 1.53
CCM2-216ENST00000488727 BRPF1P55201 1214 aaPredicted RBP24.6■■□□□ 1.53
CCM2-216ENST00000488727 FKBP5Q13451 457 aaPredicted RBP24.6■■□□□ 1.53
CCM2-216ENST00000488727 TBC1D9BQ66K14 1250 aa24.6■■□□□ 1.53
CCM2-216ENST00000488727 CLEC4GQ6UXB4 293 aa24.6■■□□□ 1.53
CCM2-216ENST00000488727 GIGYF2Q6Y7W6 1299 aaKnown RBP24.6■■□□□ 1.53
CCM2-216ENST00000488727 ZNF652Q9Y2D9 606 aa24.59■■□□□ 1.53
CCM2-216ENST00000488727 PI4KAP2A4QPH2 592 aa24.58■■□□□ 1.53
CCM2-216ENST00000488727 PI4KAP1Q8N8J0 262 aa24.58■■□□□ 1.53
CCM2-216ENST00000488727 DDX58O95786 925 aaKnown RBP24.58■■□□□ 1.52
CCM2-216ENST00000488727 NFIXQ14938 502 aa24.58■■□□□ 1.52
CCM2-216ENST00000488727 KSR2Q6VAB6 950 aa24.58■■□□□ 1.52
CCM2-216ENST00000488727 BICDL1Q6ZP65 573 aa24.58■■□□□ 1.52
CCM2-216ENST00000488727 RIC3Q7Z5B4 369 aa24.58■■□□□ 1.52
CCM2-216ENST00000488727 SGIP1Q9BQI5 828 aa24.58■■□□□ 1.52
CCM2-216ENST00000488727 ATP10DQ9P241 1426 aa24.57■■□□□ 1.52
CCM2-216ENST00000488727 TM4SF1P30408 202 aa24.57■■□□□ 1.52
CCM2-216ENST00000488727 MAP3K2Q9Y2U5 619 aa24.57■■□□□ 1.52
CCM2-216ENST00000488727 MMP10P09238 476 aa24.56■■□□□ 1.52
CCM2-216ENST00000488727 PTGER2P43116 358 aa24.56■■□□□ 1.52
CCM2-216ENST00000488727 DDR1Q08345 913 aa24.55■■□□□ 1.52
CCM2-216ENST00000488727 AFDNP55196 1824 aaKnown RBP24.55■■□□□ 1.52
CCM2-216ENST00000488727 F6X3S4 739 aa24.55■■□□□ 1.52
CCM2-216ENST00000488727 SPON1Q9HCB6 807 aa24.55■■□□□ 1.52
CCM2-216ENST00000488727 NOB1Q9ULX3 412 aaKnown RBP24.55■■□□□ 1.52
CCM2-216ENST00000488727 PTPRCP08575 1304 aa24.54■■□□□ 1.52
CCM2-216ENST00000488727 TCIRG1Q13488 830 aa24.54■■□□□ 1.52
CCM2-216ENST00000488727 ZNF34Q8IZ26 560 aa24.54■■□□□ 1.52
CCM2-216ENST00000488727 NIP7Q9Y221 180 aaKnown RBP eCLIP24.54■■□□□ 1.52
CCM2-216ENST00000488727 UBN2Q6ZU65 1347 aa24.54■■□□□ 1.52
CCM2-216ENST00000488727 KIF16BQ96L93 1317 aa24.54■■□□□ 1.52
CCM2-216ENST00000488727 POLRMTO00411 1230 aaKnown RBP24.53■■□□□ 1.52
CCM2-216ENST00000488727 GPTP24298 496 aa24.53■■□□□ 1.52
CCM2-216ENST00000488727 METTL22Q9BUU2 404 aaPredicted RBP24.53■■□□□ 1.52
CCM2-216ENST00000488727 DNAAF4Q8WXU2 420 aa24.52■■□□□ 1.52
CCM2-216ENST00000488727 NRXN2Q9P2S2 1712 aa24.52■■□□□ 1.52
CCM2-216ENST00000488727 SRCAPQ6ZRS2 3230 aa24.52■■□□□ 1.52
CCM2-216ENST00000488727 HSP90AB3PQ58FF7 597 aa24.52■■□□□ 1.52
CCM2-216ENST00000488727 SETDB2Q96T68 719 aa24.52■■□□□ 1.52
CCM2-216ENST00000488727 MYD88Q99836 296 aa24.52■■□□□ 1.52
CCM2-216ENST00000488727 ATP5J2-PTCD1G3V325 749 aa24.51■■□□□ 1.51
CCM2-216ENST00000488727 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.51■■□□□ 1.51
CCM2-216ENST00000488727 ISCA1Q9BUE6 129 aa24.51■■□□□ 1.51
CCM2-216ENST00000488727 CARMIL3Q8ND23 1372 aa24.51■■□□□ 1.51
CCM2-216ENST00000488727 PLIN1O60240 522 aa24.5■■□□□ 1.51
CCM2-216ENST00000488727 FRAT1Q92837 279 aaPredicted RBP24.5■■□□□ 1.51
CCM2-216ENST00000488727 POLD1P28340 1107 aa24.49■■□□□ 1.51
CCM2-216ENST00000488727 CRBNQ96SW2 442 aa24.49■■□□□ 1.51
CCM2-216ENST00000488727 LRP5O75197 1615 aa24.49■■□□□ 1.51
CCM2-216ENST00000488727 IGKV5-2P06315 115 aa24.49■■□□□ 1.51
CCM2-216ENST00000488727 PARP3Q9Y6F1 533 aa24.49■■□□□ 1.51
CCM2-216ENST00000488727 SERPINB2P05120 415 aa24.48■■□□□ 1.51
CCM2-216ENST00000488727 NLRP10Q86W26 655 aa24.48■■□□□ 1.51
CCM2-216ENST00000488727 ARHGAP45Q92619 1136 aa24.48■■□□□ 1.51
CCM2-216ENST00000488727 TNNQ9UQP3 1299 aa24.48■■□□□ 1.51
CCM2-216ENST00000488727 N4BP2Q86UW6 1770 aaPredicted RBP24.48■■□□□ 1.51
CCM2-216ENST00000488727 FAM177BA6PVY3 158 aa24.47■■□□□ 1.51
CCM2-216ENST00000488727 SUSD4Q5VX71 490 aa24.47■■□□□ 1.51
CCM2-216ENST00000488727 TRIM27P14373 513 aa24.47■■□□□ 1.51
CCM2-216ENST00000488727 TRIM28Q13263 835 aaKnown RBP24.47■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms