RNA–Protein interactions for RNA: ENST00000487602.5

RBM28-206, Transcript of RNA binding motif protein 28, human

TSL 5

Gene RBM28, Length 715 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM28-206	ENST00000487602	ADCY9	O60503	1353 aa		10.14	□□□□□ -0.79
RBM28-206	ENST00000487602	ZBTB7B	O15156	539 aa	Predicted RBP	10.13	□□□□□ -0.79
RBM28-206	ENST00000487602	PLSCR1	O15162	318 aa		10.13	□□□□□ -0.79
RBM28-206	ENST00000487602	KCNQ4	P56696	695 aa		10.13	□□□□□ -0.79
RBM28-206	ENST00000487602	RC3H1	Q5TC82	1133 aa	Known RBP	10.13	□□□□□ -0.79
RBM28-206	ENST00000487602	TTLL7	Q6ZT98	887 aa		10.13	□□□□□ -0.79
RBM28-206	ENST00000487602	RIC3	Q7Z5B4	369 aa		10.13	□□□□□ -0.79
RBM28-206	ENST00000487602	PLBD2	Q8NHP8	589 aa		10.13	□□□□□ -0.79
RBM28-206	ENST00000487602	CHMP4B	Q9H444	224 aa	Known RBP	10.13	□□□□□ -0.79
RBM28-206	ENST00000487602	COL5A3	P25940	1745 aa	Predicted RBP	10.13	□□□□□ -0.79
RBM28-206	ENST00000487602	RREB1	Q92766	1687 aa		10.12	□□□□□ -0.79
RBM28-206	ENST00000487602	APBA3	O96018	575 aa		10.12	□□□□□ -0.79
RBM28-206	ENST00000487602	HMGB2	P26583	209 aa	Known RBP	10.12	□□□□□ -0.79
RBM28-206	ENST00000487602	EIF5	P55010	431 aa	Known RBP	10.12	□□□□□ -0.79
RBM28-206	ENST00000487602	SLC27A3	Q5K4L6	730 aa		10.12	□□□□□ -0.79
RBM28-206	ENST00000487602	BEND3	Q5T5X7	828 aa		10.12	□□□□□ -0.79
RBM28-206	ENST00000487602	METTL22	Q9BUU2	404 aa	Predicted RBP	10.12	□□□□□ -0.79
RBM28-206	ENST00000487602	SRCIN1	Q9C0H9	1055 aa		10.12	□□□□□ -0.79
RBM28-206	ENST00000487602	ZBTB40	Q9NUA8	1239 aa		10.12	□□□□□ -0.79
RBM28-206	ENST00000487602	CNTNAP4	Q9C0A0	1308 aa		10.11	□□□□□ -0.79
RBM28-206	ENST00000487602	ALDH1L1	O75891	902 aa		10.11	□□□□□ -0.79
RBM28-206	ENST00000487602	TXNRD1	Q16881	649 aa		10.11	□□□□□ -0.79
RBM28-206	ENST00000487602	NPM2	Q86SE8	214 aa	Known RBP	10.11	□□□□□ -0.79
RBM28-206	ENST00000487602	PROM2	Q8N271	834 aa		10.11	□□□□□ -0.79
RBM28-206	ENST00000487602	LRRC4B	Q9NT99	713 aa		10.11	□□□□□ -0.79
RBM28-206	ENST00000487602	ZNF330	Q9Y3S2	320 aa	Predicted RBP	10.11	□□□□□ -0.79
RBM28-206	ENST00000487602	PXDNL	A1KZ92	1463 aa		10.1	□□□□□ -0.79
RBM28-206	ENST00000487602	TAF1L	Q8IZX4	1826 aa		10.1	□□□□□ -0.79
RBM28-206	ENST00000487602	ATP10D	Q9P241	1426 aa		10.1	□□□□□ -0.79
RBM28-206	ENST00000487602		A0A087WZG4	1122 aa		10.1	□□□□□ -0.79
RBM28-206	ENST00000487602	RPS6KA4	O75676	772 aa		10.1	□□□□□ -0.79
RBM28-206	ENST00000487602	NEXN	Q0ZGT2	675 aa		10.1	□□□□□ -0.79
RBM28-206	ENST00000487602	KIF6	Q6ZMV9	814 aa		10.1	□□□□□ -0.79
RBM28-206	ENST00000487602	LINS1	Q8NG48	757 aa		10.1	□□□□□ -0.79
RBM28-206	ENST00000487602	MYD88	Q99836	296 aa		10.1	□□□□□ -0.79
RBM28-206	ENST00000487602	MAP3K15	Q6ZN16	1313 aa		10.09	□□□□□ -0.79
RBM28-206	ENST00000487602	ERVV-1	B6SEH8	477 aa		10.09	□□□□□ -0.79
RBM28-206	ENST00000487602	IGKV5-2	P06315	115 aa		10.09	□□□□□ -0.79
RBM28-206	ENST00000487602	DZIP3	Q86Y13	1208 aa	Known RBP	10.09	□□□□□ -0.79
RBM28-206	ENST00000487602	ARX	Q96QS3	562 aa		10.09	□□□□□ -0.79
RBM28-206	ENST00000487602	ZBTB3	Q9H5J0	574 aa		10.09	□□□□□ -0.79
RBM28-206	ENST00000487602	TBC1D2B	Q9UPU7	963 aa		10.09	□□□□□ -0.79
RBM28-206	ENST00000487602	MYH14	Q7Z406	1995 aa	Known RBP	10.08	□□□□□ -0.8
RBM28-206	ENST00000487602	NUP188	Q5SRE5	1749 aa		10.08	□□□□□ -0.8
RBM28-206	ENST00000487602	NEURL1B	A8MQ27	555 aa		10.08	□□□□□ -0.8
RBM28-206	ENST00000487602	GNAI3	P08754	354 aa		10.08	□□□□□ -0.8
RBM28-206	ENST00000487602	TCIRG1	Q13488	830 aa		10.08	□□□□□ -0.8
RBM28-206	ENST00000487602	B4GALNT3	Q6L9W6	998 aa		10.08	□□□□□ -0.8
RBM28-206	ENST00000487602	GIGYF2	Q6Y7W6	1299 aa	Known RBP	10.08	□□□□□ -0.8
RBM28-206	ENST00000487602	CCDC136	Q96JN2	1154 aa		10.08	□□□□□ -0.8
RBM28-206	ENST00000487602	MEIS3	Q99687	375 aa		10.08	□□□□□ -0.8
RBM28-206	ENST00000487602	USP44	Q9H0E7	712 aa		10.08	□□□□□ -0.8
RBM28-206	ENST00000487602	PCDHB15	Q9Y5E8	787 aa		10.08	□□□□□ -0.8
RBM28-206	ENST00000487602	IBTK	Q9P2D0	1353 aa	Predicted RBP	10.08	□□□□□ -0.8
RBM28-206	ENST00000487602	COL15A1	P39059	1388 aa		10.07	□□□□□ -0.8
RBM28-206	ENST00000487602	GNPAT	O15228	680 aa		10.07	□□□□□ -0.8
RBM28-206	ENST00000487602	CAMTA2	O94983	1202 aa		10.07	□□□□□ -0.8
RBM28-206	ENST00000487602	MYCN	P04198	464 aa	Predicted RBP	10.07	□□□□□ -0.8
RBM28-206	ENST00000487602	TRIM28	Q13263	835 aa	Known RBP	10.07	□□□□□ -0.8
RBM28-206	ENST00000487602	GCKR	Q14397	625 aa		10.07	□□□□□ -0.8
RBM28-206	ENST00000487602	HLF	Q16534	295 aa		10.07	□□□□□ -0.8
RBM28-206	ENST00000487602	CWF19L2	Q2TBE0	894 aa	Known RBP	10.07	□□□□□ -0.8
RBM28-206	ENST00000487602	HSP90AB3P	Q58FF7	597 aa		10.07	□□□□□ -0.8
RBM28-206	ENST00000487602	AK7	Q96M32	723 aa		10.07	□□□□□ -0.8
RBM28-206	ENST00000487602	CAMKK2	Q96RR4	588 aa		10.07	□□□□□ -0.8
RBM28-206	ENST00000487602	ISCA1	Q9BUE6	129 aa		10.07	□□□□□ -0.8
RBM28-206	ENST00000487602	RTCB	Q9Y3I0	505 aa	Known RBP	10.07	□□□□□ -0.8
RBM28-206	ENST00000487602	ATP5J2-PTCD1	G3V325	749 aa		10.06	□□□□□ -0.8
RBM28-206	ENST00000487602	RGL2	O15211	777 aa		10.06	□□□□□ -0.8
RBM28-206	ENST00000487602	SF3B2	Q13435	895 aa	Known RBP	10.06	□□□□□ -0.8
RBM28-206	ENST00000487602	CCDC191	Q8NCU4	936 aa		10.06	□□□□□ -0.8
RBM28-206	ENST00000487602	C9orf78	Q9NZ63	289 aa	Predicted RBP	10.06	□□□□□ -0.8
RBM28-206	ENST00000487602	C4B	P0C0L5	1744 aa		10.06	□□□□□ -0.8
RBM28-206	ENST00000487602	UTY	O14607	1347 aa		10.06	□□□□□ -0.8
RBM28-206	ENST00000487602	GRM8	O00222	908 aa		10.05	□□□□□ -0.8
RBM28-206	ENST00000487602	GNAI2	P04899	355 aa		10.05	□□□□□ -0.8
RBM28-206	ENST00000487602	NBPF7	P0C2Y1	421 aa	Predicted RBP	10.05	□□□□□ -0.8
RBM28-206	ENST00000487602	UBTFL1	P0CB47	393 aa	Predicted RBP	10.05	□□□□□ -0.8
RBM28-206	ENST00000487602	BAG6	P46379	1132 aa		10.05	□□□□□ -0.8
RBM28-206	ENST00000487602	EN1	Q05925	392 aa	Predicted RBP	10.05	□□□□□ -0.8
RBM28-206	ENST00000487602	TRAPPC3L	Q5T215	181 aa		10.05	□□□□□ -0.8
RBM28-206	ENST00000487602	CLEC4G	Q6UXB4	293 aa		10.05	□□□□□ -0.8
RBM28-206	ENST00000487602	CCDC125	Q86Z20	511 aa		10.05	□□□□□ -0.8
RBM28-206	ENST00000487602	RPAP2	Q8IXW5	612 aa	Predicted RBP	10.05	□□□□□ -0.8
RBM28-206	ENST00000487602	ZNF34	Q8IZ26	560 aa		10.05	□□□□□ -0.8
RBM28-206	ENST00000487602	ARHGEF1	Q92888	912 aa	Known RBP	10.05	□□□□□ -0.8
RBM28-206	ENST00000487602	C1orf115	Q9H7X2	142 aa		10.05	□□□□□ -0.8
RBM28-206	ENST00000487602	CWC25	Q9NXE8	425 aa	Predicted RBP	10.05	□□□□□ -0.8
RBM28-206	ENST00000487602	NARF	Q9UHQ1	456 aa		10.05	□□□□□ -0.8
RBM28-206	ENST00000487602	HDAC5	Q9UQL6	1122 aa		10.05	□□□□□ -0.8
RBM28-206	ENST00000487602	TUBGCP6	Q96RT7	1819 aa		10.05	□□□□□ -0.8
RBM28-206	ENST00000487602	QSER1	Q2KHR3	1735 aa		10.04	□□□□□ -0.8
RBM28-206	ENST00000487602	N4BP2	Q86UW6	1770 aa	Predicted RBP	10.04	□□□□□ -0.8
RBM28-206	ENST00000487602		H7C1W4	665 aa		10.04	□□□□□ -0.8
RBM28-206	ENST00000487602	IGHD	P01880	384 aa		10.04	□□□□□ -0.8
RBM28-206	ENST00000487602	CACNB1	Q02641	598 aa	Predicted RBP	10.04	□□□□□ -0.8
RBM28-206	ENST00000487602	EZH2	Q15910	746 aa	Known RBP	10.04	□□□□□ -0.8
RBM28-206	ENST00000487602	SMIM5	Q71RC9	77 aa		10.04	□□□□□ -0.8
RBM28-206	ENST00000487602	AMIGO3	Q86WK7	504 aa		10.04	□□□□□ -0.8
RBM28-206	ENST00000487602	AKT1S1	Q96B36	256 aa		10.04	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 118.4 ms