RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 EVI5LQ96CN4 794 aa13□□□□□ -0.33
HDAC6-228ENST00000486227 SIRT1Q96EB6 747 aa13□□□□□ -0.33
HDAC6-228ENST00000486227 BRMS1Q9HCU9 246 aa13□□□□□ -0.33
HDAC6-228ENST00000486227 ALDH1L1O75891 902 aa13□□□□□ -0.33
HDAC6-228ENST00000486227 AIDAQ96BJ3 306 aa13□□□□□ -0.33
HDAC6-228ENST00000486227 SNRKQ9NRH2 765 aa13□□□□□ -0.33
HDAC6-228ENST00000486227 RNMTO43148 476 aaKnown RBP13□□□□□ -0.33
HDAC6-228ENST00000486227 CWF19L2Q2TBE0 894 aaKnown RBP13□□□□□ -0.33
HDAC6-228ENST00000486227 ZNF396Q96N95 335 aaPredicted RBP13□□□□□ -0.33
HDAC6-228ENST00000486227 LDHAL6AQ6ZMR3 332 aa12.99□□□□□ -0.33
HDAC6-228ENST00000486227 TMOD2Q9NZR1 351 aa12.99□□□□□ -0.33
HDAC6-228ENST00000486227 IMMTQ16891 758 aaKnown RBP12.99□□□□□ -0.33
HDAC6-228ENST00000486227 LINS1Q8NG48 757 aa12.99□□□□□ -0.33
HDAC6-228ENST00000486227 NUP133Q8WUM0 1156 aa12.99□□□□□ -0.33
HDAC6-228ENST00000486227 U3KPZ7 1027 aaPredicted RBP12.99□□□□□ -0.33
HDAC6-228ENST00000486227 KAT6BQ8WYB5 2073 aa12.99□□□□□ -0.33
HDAC6-228ENST00000486227 ANKRD18BA2A2Z9 1011 aa12.99□□□□□ -0.33
HDAC6-228ENST00000486227 PA2G4Q9UQ80 394 aaKnown RBP12.99□□□□□ -0.33
HDAC6-228ENST00000486227 CFAP74Q9C0B2 1584 aa12.99□□□□□ -0.33
HDAC6-228ENST00000486227 GOLIM4O00461 696 aa12.98□□□□□ -0.33
HDAC6-228ENST00000486227 SSFA2P28290 1259 aa12.98□□□□□ -0.33
HDAC6-228ENST00000486227 ZSCAN29Q8IWY8 852 aaPredicted RBP12.98□□□□□ -0.33
HDAC6-228ENST00000486227 GOLGA6L1Q8N7Z2 621 aa12.98□□□□□ -0.33
HDAC6-228ENST00000486227 LGR6Q9HBX8 967 aa12.98□□□□□ -0.33
HDAC6-228ENST00000486227 ATP2B2Q01814 1243 aa12.98□□□□□ -0.33
HDAC6-228ENST00000486227 CCDC69A6NI79 296 aa12.98□□□□□ -0.33
HDAC6-228ENST00000486227 RPGRQ92834 1020 aaKnown RBP12.98□□□□□ -0.33
HDAC6-228ENST00000486227 MYOM2P54296 1465 aa12.98□□□□□ -0.33
HDAC6-228ENST00000486227 SEC24BO95487 1268 aa12.98□□□□□ -0.33
HDAC6-228ENST00000486227 ME1P48163 572 aa12.98□□□□□ -0.33
HDAC6-228ENST00000486227 KLHL40Q2TBA0 621 aa12.98□□□□□ -0.33
HDAC6-228ENST00000486227 SMARCC1Q92922 1105 aaPredicted RBP12.98□□□□□ -0.33
HDAC6-228ENST00000486227 DYNC1I1O14576 645 aa12.97□□□□□ -0.33
HDAC6-228ENST00000486227 RFC4P35249 363 aa12.97□□□□□ -0.33
HDAC6-228ENST00000486227 NBPF6Q5VWK0 638 aa12.97□□□□□ -0.33
HDAC6-228ENST00000486227 LMBR1LQ6UX01 489 aa12.97□□□□□ -0.33
HDAC6-228ENST00000486227 TRIM22Q8IYM9 498 aa12.97□□□□□ -0.33
HDAC6-228ENST00000486227 NBPF4Q96M43 638 aa12.97□□□□□ -0.33
HDAC6-228ENST00000486227 KDM2BQ8NHM5 1336 aa12.97□□□□□ -0.33
HDAC6-228ENST00000486227 IL2RBP14784 551 aa12.97□□□□□ -0.33
HDAC6-228ENST00000486227 TSR1Q2NL82 804 aaKnown RBP12.97□□□□□ -0.33
HDAC6-228ENST00000486227 DDX17Q92841 729 aaKnown RBP12.97□□□□□ -0.33
HDAC6-228ENST00000486227 TPM1P09493 284 aa12.97□□□□□ -0.33
HDAC6-228ENST00000486227 DCAF5Q96JK2 942 aa12.97□□□□□ -0.33
HDAC6-228ENST00000486227 KDM5AP29375 1690 aaKnown RBP12.96□□□□□ -0.33
HDAC6-228ENST00000486227 GPS2Q13227 327 aa12.96□□□□□ -0.33
HDAC6-228ENST00000486227 CAVIN4Q5BKX8 364 aa12.96□□□□□ -0.33
HDAC6-228ENST00000486227 ANKIB1Q9P2G1 1089 aa12.96□□□□□ -0.33
HDAC6-228ENST00000486227 LIMCH1Q9UPQ0 1083 aa12.96□□□□□ -0.33
HDAC6-228ENST00000486227 UBAC1Q9BSL1 405 aa12.96□□□□□ -0.34
HDAC6-228ENST00000486227 PLXNC1O60486 1568 aa12.96□□□□□ -0.34
HDAC6-228ENST00000486227 SYCE3A1L190 88 aa12.96□□□□□ -0.34
HDAC6-228ENST00000486227 ACSBG1Q96GR2 724 aa12.96□□□□□ -0.34
HDAC6-228ENST00000486227 SPATA32Q96LK8 384 aa12.96□□□□□ -0.34
HDAC6-228ENST00000486227 TRIM5Q9C035 493 aa12.96□□□□□ -0.34
HDAC6-228ENST00000486227 PLEKHM2Q8IWE5 1019 aa12.95□□□□□ -0.34
HDAC6-228ENST00000486227 CEP89Q96ST8 783 aa12.95□□□□□ -0.34
HDAC6-228ENST00000486227 ARGLU1Q9NWB6 273 aaPredicted RBP12.95□□□□□ -0.34
HDAC6-228ENST00000486227 ANKRD20A12PQ8NF67 263 aa12.95□□□□□ -0.34
HDAC6-228ENST00000486227 NAT10Q9H0A0 1025 aaKnown RBP12.95□□□□□ -0.34
HDAC6-228ENST00000486227 TAF3Q5VWG9 929 aa12.95□□□□□ -0.34
HDAC6-228ENST00000486227 DDX46Q7L014 1031 aaKnown RBP12.95□□□□□ -0.34
HDAC6-228ENST00000486227 PDCL2Q8N4E4 241 aa12.95□□□□□ -0.34
HDAC6-228ENST00000486227 ADCY10Q96PN6 1610 aa12.94□□□□□ -0.34
HDAC6-228ENST00000486227 SH2B1Q9NRF2 756 aaPredicted RBP12.94□□□□□ -0.34
HDAC6-228ENST00000486227 ESYT1Q9BSJ8 1104 aa12.94□□□□□ -0.34
HDAC6-228ENST00000486227 TNMDQ9H2S6 317 aa12.94□□□□□ -0.34
HDAC6-228ENST00000486227 DDX21Q9NR30 783 aaKnown RBP eCLIP12.94□□□□□ -0.34
HDAC6-228ENST00000486227 BAG4O95429 457 aaKnown RBP12.94□□□□□ -0.34
HDAC6-228ENST00000486227 SLC5A1P13866 664 aa12.94□□□□□ -0.34
HDAC6-228ENST00000486227 OLFM4Q6UX06 510 aa12.94□□□□□ -0.34
HDAC6-228ENST00000486227 MPNDQ8N594 471 aa12.94□□□□□ -0.34
HDAC6-228ENST00000486227 PCMTD1Q96MG8 357 aaPredicted RBP12.94□□□□□ -0.34
HDAC6-228ENST00000486227 HECW2Q9P2P5 1572 aa12.94□□□□□ -0.34
HDAC6-228ENST00000486227 EFCAB6Q5THR3 1501 aa12.93□□□□□ -0.34
HDAC6-228ENST00000486227 MINDY4BA8MYZ0 360 aa12.93□□□□□ -0.34
HDAC6-228ENST00000486227 MAP3K12Q12852 859 aa12.93□□□□□ -0.34
HDAC6-228ENST00000486227 JMYQ8N9B5 988 aa12.93□□□□□ -0.34
HDAC6-228ENST00000486227 NAPBQ9H115 298 aa12.93□□□□□ -0.34
HDAC6-228ENST00000486227 ZNF790Q6PG37 636 aa12.93□□□□□ -0.34
HDAC6-228ENST00000486227 OFD1O75665 1012 aa12.93□□□□□ -0.34
HDAC6-228ENST00000486227 CCDC192P0DO97 292 aa12.93□□□□□ -0.34
HDAC6-228ENST00000486227 OTUD7AQ8TE49 926 aaPredicted RBP12.93□□□□□ -0.34
HDAC6-228ENST00000486227 SNX21Q969T3 373 aa12.93□□□□□ -0.34
HDAC6-228ENST00000486227 CFAP45Q9UL16 551 aa12.93□□□□□ -0.34
HDAC6-228ENST00000486227 CDKL5O76039 1030 aa12.92□□□□□ -0.34
HDAC6-228ENST00000486227 PRDM10Q9NQV6 1147 aa12.92□□□□□ -0.34
HDAC6-228ENST00000486227 ZNF219Q9P2Y4 722 aaPredicted RBP12.92□□□□□ -0.34
HDAC6-228ENST00000486227 HS1BP3Q53T59 392 aa12.92□□□□□ -0.34
HDAC6-228ENST00000486227 HOMER1Q86YM7 354 aa12.92□□□□□ -0.34
HDAC6-228ENST00000486227 PLEKHF1Q96S99 279 aa12.92□□□□□ -0.34
HDAC6-228ENST00000486227 C6orf229H3BNL8 230 aa12.92□□□□□ -0.34
HDAC6-228ENST00000486227 ATP6V1AP38606 617 aa12.92□□□□□ -0.34
HDAC6-228ENST00000486227 ROBO2Q9HCK4 1378 aa12.92□□□□□ -0.34
HDAC6-228ENST00000486227 SOS1Q07889 1333 aaPredicted RBP12.92□□□□□ -0.34
HDAC6-228ENST00000486227 ZNF213O14771 459 aa12.91□□□□□ -0.34
HDAC6-228ENST00000486227 CCAR2Q8N163 923 aaKnown RBP12.91□□□□□ -0.34
HDAC6-228ENST00000486227 CCDC112Q8NEF3 446 aa12.91□□□□□ -0.34
HDAC6-228ENST00000486227 CDC5LQ99459 802 aaKnown RBP12.91□□□□□ -0.34
HDAC6-228ENST00000486227 BTG4Q9NY30 223 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms