RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 KHNYNO15037 678 aaKnown RBP8.16□□□□□ -1.1
VPS41-213ENST00000485955 C1orf53Q5VUE5 145 aa8.16□□□□□ -1.1
VPS41-213ENST00000485955 ALDH16A1Q8IZ83 802 aa8.16□□□□□ -1.1
VPS41-213ENST00000485955 ZNF280CQ8ND82 737 aa8.16□□□□□ -1.1
VPS41-213ENST00000485955 CCDC97Q96F63 343 aaPredicted RBP8.16□□□□□ -1.1
VPS41-213ENST00000485955 STRN4Q9NRL3 753 aa8.16□□□□□ -1.1
VPS41-213ENST00000485955 SERPINA10Q9UK55 444 aa8.16□□□□□ -1.1
VPS41-213ENST00000485955 CHMP3Q9Y3E7 222 aa8.16□□□□□ -1.1
VPS41-213ENST00000485955 GJA3Q9Y6H8 435 aa8.16□□□□□ -1.1
VPS41-213ENST00000485955 WEE1P30291 646 aa8.15□□□□□ -1.1
VPS41-213ENST00000485955 FAM69CQ0P6D2 419 aa8.15□□□□□ -1.1
VPS41-213ENST00000485955 C1orf229Q6ZS94 237 aaPredicted RBP8.15□□□□□ -1.1
VPS41-213ENST00000485955 RHPN1Q8TCX5 695 aa8.15□□□□□ -1.1
VPS41-213ENST00000485955 STK32AQ8WU08 396 aa8.15□□□□□ -1.1
VPS41-213ENST00000485955 HSH2DQ96JZ2 352 aa8.15□□□□□ -1.1
VPS41-213ENST00000485955 NSFL1CQ9UNZ2 370 aaKnown RBP8.15□□□□□ -1.1
VPS41-213ENST00000485955 EFSO43281 561 aa8.14□□□□□ -1.11
VPS41-213ENST00000485955 BCRP11274 1271 aa8.14□□□□□ -1.11
VPS41-213ENST00000485955 BMP4P12644 408 aa8.14□□□□□ -1.11
VPS41-213ENST00000485955 CD33P20138 364 aa8.14□□□□□ -1.11
VPS41-213ENST00000485955 IGFBP4P22692 258 aa8.14□□□□□ -1.11
VPS41-213ENST00000485955 MAP2K3P46734 347 aa8.14□□□□□ -1.11
VPS41-213ENST00000485955 GRIN2CQ14957 1233 aa8.14□□□□□ -1.11
VPS41-213ENST00000485955 SAMD5Q5TGI4 173 aa8.14□□□□□ -1.11
VPS41-213ENST00000485955 CCDC82Q8N4S0 544 aa8.14□□□□□ -1.11
VPS41-213ENST00000485955 NGLY1Q96IV0 654 aa8.14□□□□□ -1.11
VPS41-213ENST00000485955 OXCT2Q9BYC2 517 aaPredicted RBP8.14□□□□□ -1.11
VPS41-213ENST00000485955 FAM157BP0CG42 384 aa8.13□□□□□ -1.11
VPS41-213ENST00000485955 ELOAQ14241 798 aaKnown RBP8.13□□□□□ -1.11
VPS41-213ENST00000485955 NEUROD4Q9HD90 331 aa8.13□□□□□ -1.11
VPS41-213ENST00000485955 GPC6Q9Y625 555 aaPredicted RBP8.13□□□□□ -1.11
VPS41-213ENST00000485955 ATG7O95352 703 aa8.12□□□□□ -1.11
VPS41-213ENST00000485955 SUSD3Q96L08 255 aa8.12□□□□□ -1.11
VPS41-213ENST00000485955 PRIMPOLQ96LW4 560 aa8.12□□□□□ -1.11
VPS41-213ENST00000485955 ACIN1Q9UKV3 1341 aaKnown RBP8.11□□□□□ -1.11
VPS41-213ENST00000485955 OIP5O43482 229 aa8.11□□□□□ -1.11
VPS41-213ENST00000485955 MAP3K10Q02779 954 aa8.11□□□□□ -1.11
VPS41-213ENST00000485955 SFSWAPQ12872 951 aaKnown RBP8.11□□□□□ -1.11
VPS41-213ENST00000485955 PBXIP1Q96AQ6 731 aa8.11□□□□□ -1.11
VPS41-213ENST00000485955 KLF15Q9UIH9 416 aa8.11□□□□□ -1.11
VPS41-213ENST00000485955 SHISA8B8ZZ34 492 aa8.1□□□□□ -1.11
VPS41-213ENST00000485955 GSK3AP49840 483 aa8.1□□□□□ -1.11
VPS41-213ENST00000485955 FAM182BQ5T319 152 aa8.1□□□□□ -1.11
VPS41-213ENST00000485955 TMEM164Q5U3C3 297 aa8.1□□□□□ -1.11
VPS41-213ENST00000485955 GALNT6Q8NCL4 622 aa8.1□□□□□ -1.11
VPS41-213ENST00000485955 MARK1Q9P0L2 795 aa8.1□□□□□ -1.11
VPS41-213ENST00000485955 GGA1Q9UJY5 639 aa8.1□□□□□ -1.11
VPS41-213ENST00000485955 BCS1LQ9Y276 419 aa8.1□□□□□ -1.11
VPS41-213ENST00000485955 PRMT3O60678 531 aa8.09□□□□□ -1.11
VPS41-213ENST00000485955 OCLNQ16625 522 aa8.09□□□□□ -1.11
VPS41-213ENST00000485955 CEP63Q96MT8 703 aa8.09□□□□□ -1.11
VPS41-213ENST00000485955 LRRC4BQ9NT99 713 aa8.09□□□□□ -1.11
VPS41-213ENST00000485955 ANKIB1Q9P2G1 1089 aa8.09□□□□□ -1.11
VPS41-213ENST00000485955 DNMT3AQ9Y6K1 912 aaPredicted RBP8.09□□□□□ -1.11
VPS41-213ENST00000485955 NEURL1BA8MQ27 555 aa8.08□□□□□ -1.12
VPS41-213ENST00000485955 FKBP5Q13451 457 aaPredicted RBP8.08□□□□□ -1.12
VPS41-213ENST00000485955 LAMC2Q13753 1193 aa8.08□□□□□ -1.12
VPS41-213ENST00000485955 RTN1Q16799 776 aa8.08□□□□□ -1.12
VPS41-213ENST00000485955 SWI5Q1ZZU3 235 aa8.08□□□□□ -1.12
VPS41-213ENST00000485955 EDARADDQ8WWZ3 215 aa8.08□□□□□ -1.12
VPS41-213ENST00000485955 QTRT2Q9H974 415 aaKnown RBP8.08□□□□□ -1.12
VPS41-213ENST00000485955 ENAMQ9NRM1 1142 aa8.08□□□□□ -1.12
VPS41-213ENST00000485955 SLAIN2Q9P270 581 aa8.08□□□□□ -1.12
VPS41-213ENST00000485955 GDF2Q9UK05 429 aaPredicted RBP8.08□□□□□ -1.12
VPS41-213ENST00000485955 FOXO3O43524 673 aa8.07□□□□□ -1.12
VPS41-213ENST00000485955 ARAFP10398 606 aa8.07□□□□□ -1.12
VPS41-213ENST00000485955 PCBP4P57723 403 aaKnown RBP8.07□□□□□ -1.12
VPS41-213ENST00000485955 GOLGA6L1Q8N7Z2 621 aa8.07□□□□□ -1.12
VPS41-213ENST00000485955 NEDD1Q8NHV4 660 aa8.07□□□□□ -1.12
VPS41-213ENST00000485955 SLC30A3Q99726 388 aa8.07□□□□□ -1.12
VPS41-213ENST00000485955 BRD7Q9NPI1 651 aa8.07□□□□□ -1.12
VPS41-213ENST00000485955 KLK14Q9P0G3 267 aa8.07□□□□□ -1.12
VPS41-213ENST00000485955 CNTNAP5Q8WYK1 1306 aa8.06□□□□□ -1.12
VPS41-213ENST00000485955 MARSP56192 900 aaKnown RBP8.06□□□□□ -1.12
VPS41-213ENST00000485955 TYRO3Q06418 890 aa8.06□□□□□ -1.12
VPS41-213ENST00000485955 SLCO4C1Q6ZQN7 724 aa8.06□□□□□ -1.12
VPS41-213ENST00000485955 CAPN12Q6ZSI9 719 aa8.06□□□□□ -1.12
VPS41-213ENST00000485955 BTLAQ7Z6A9 289 aa8.06□□□□□ -1.12
VPS41-213ENST00000485955 DMGDHQ9UI17 866 aaKnown RBP8.06□□□□□ -1.12
VPS41-213ENST00000485955 PRR12Q9ULL5 1215 aa8.06□□□□□ -1.12
VPS41-213ENST00000485955 EPXP11678 715 aa8.05□□□□□ -1.12
VPS41-213ENST00000485955 SNRPNP63162 240 aaKnown RBP8.05□□□□□ -1.12
VPS41-213ENST00000485955 KCNMA1Q12791 1236 aa8.05□□□□□ -1.12
VPS41-213ENST00000485955 ZNF468Q5VIY5 522 aaPredicted RBP8.05□□□□□ -1.12
VPS41-213ENST00000485955 FCHSD1Q86WN1 690 aa8.05□□□□□ -1.12
VPS41-213ENST00000485955 LRFN2Q9ULH4 789 aa8.05□□□□□ -1.12
VPS41-213ENST00000485955 HOXB4P17483 251 aaPredicted RBP8.04□□□□□ -1.12
VPS41-213ENST00000485955 ADH6P28332 368 aa8.04□□□□□ -1.12
VPS41-213ENST00000485955 KCNQ4P56696 695 aa8.04□□□□□ -1.12
VPS41-213ENST00000485955 DGKZQ13574 1117 aa8.04□□□□□ -1.12
VPS41-213ENST00000485955 VTI1AQ96AJ9 217 aa8.04□□□□□ -1.12
VPS41-213ENST00000485955 SUPT5HO00267 1087 aaKnown RBP8.03□□□□□ -1.12
VPS41-213ENST00000485955 GRNP28799 593 aaKnown RBP8.03□□□□□ -1.12
VPS41-213ENST00000485955 IRS1P35568 1242 aa8.03□□□□□ -1.12
VPS41-213ENST00000485955 COX20Q5RI15 118 aa8.03□□□□□ -1.12
VPS41-213ENST00000485955 RAB44Q7Z6P3 723 aaPredicted RBP8.03□□□□□ -1.12
VPS41-213ENST00000485955 SYT9Q86SS6 491 aa8.03□□□□□ -1.12
VPS41-213ENST00000485955 MYO19Q96H55 970 aa8.03□□□□□ -1.12
VPS41-213ENST00000485955 BTBD6Q96KE9 485 aa8.03□□□□□ -1.12
VPS41-213ENST00000485955 SAP130Q9H0E3 1048 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms