RNA–Protein interactions for RNA: ENST00000484112.5

CPSF4-213, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 825 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-213ENST00000484112 PRKRIP1Q9H875 184 aaPredicted RBP13.27□□□□□ -0.29
CPSF4-213ENST00000484112 VIRMAQ69YN4 1812 aaKnown RBP13.27□□□□□ -0.29
CPSF4-213ENST00000484112 BTBD11A6QL63 1104 aa13.26□□□□□ -0.29
CPSF4-213ENST00000484112 CAMTA2O94983 1202 aa13.26□□□□□ -0.29
CPSF4-213ENST00000484112 POTEIP0CG38 1075 aa13.26□□□□□ -0.29
CPSF4-213ENST00000484112 POTEJP0CG39 1038 aa13.26□□□□□ -0.29
CPSF4-213ENST00000484112 PRPF40BQ6NWY9 871 aaKnown RBP13.26□□□□□ -0.29
CPSF4-213ENST00000484112 DZIP3Q86Y13 1208 aaKnown RBP13.26□□□□□ -0.29
CPSF4-213ENST00000484112 U2AF1L5P0DN76 240 aaPredicted RBP13.25□□□□□ -0.29
CPSF4-213ENST00000484112 SRGNP10124 158 aa13.25□□□□□ -0.29
CPSF4-213ENST00000484112 U2AF1Q01081 240 aaKnown RBP eCLIP13.25□□□□□ -0.29
CPSF4-213ENST00000484112 STYK1Q6J9G0 422 aa13.25□□□□□ -0.29
CPSF4-213ENST00000484112 MASTLQ96GX5 879 aa13.25□□□□□ -0.29
CPSF4-213ENST00000484112 RSPH6AQ9H0K4 717 aa13.25□□□□□ -0.29
CPSF4-213ENST00000484112 CREBZFQ9NS37 354 aa13.25□□□□□ -0.29
CPSF4-213ENST00000484112 USP16Q9Y5T5 823 aa13.25□□□□□ -0.29
CPSF4-213ENST00000484112 UBR2Q8IWV8 1755 aa13.25□□□□□ -0.29
CPSF4-213ENST00000484112 SOGA3Q5TF21 947 aa13.24□□□□□ -0.29
CPSF4-213ENST00000484112 NBPF5PQ86XG9 351 aaPredicted RBP13.24□□□□□ -0.29
CPSF4-213ENST00000484112 ANKRD31Q8N7Z5 1873 aa13.24□□□□□ -0.29
CPSF4-213ENST00000484112 LTBP3Q9NS15 1303 aa13.23□□□□□ -0.29
CPSF4-213ENST00000484112 FAM177BA6PVY3 158 aa13.23□□□□□ -0.29
CPSF4-213ENST00000484112 NEFMP07197 916 aa13.23□□□□□ -0.29
CPSF4-213ENST00000484112 PHACTR3Q96KR7 559 aa13.23□□□□□ -0.29
CPSF4-213ENST00000484112 PRAMEF22A3QJZ6 481 aa13.22□□□□□ -0.29
CPSF4-213ENST00000484112 IQCA1LA6NCM1 817 aa13.22□□□□□ -0.29
CPSF4-213ENST00000484112 PRKAR2BP31323 418 aa13.22□□□□□ -0.29
CPSF4-213ENST00000484112 EAPPQ56P03 285 aaPredicted RBP13.22□□□□□ -0.29
CPSF4-213ENST00000484112 COL11A2P13942 1736 aaPredicted RBP13.22□□□□□ -0.29
CPSF4-213ENST00000484112 SLX4Q8IY92 1834 aa13.21□□□□□ -0.29
CPSF4-213ENST00000484112 CCDC93Q567U6 631 aa13.21□□□□□ -0.29
CPSF4-213ENST00000484112 RTF1Q92541 710 aaKnown RBP13.21□□□□□ -0.29
CPSF4-213ENST00000484112 ZNF277Q9NRM2 450 aaPredicted RBP13.21□□□□□ -0.29
CPSF4-213ENST00000484112 CLEC11AQ9Y240 323 aa13.21□□□□□ -0.29
CPSF4-213ENST00000484112 ZNF652Q9Y2D9 606 aa13.21□□□□□ -0.29
CPSF4-213ENST00000484112 SCN7AQ01118 1682 aa13.21□□□□□ -0.3
CPSF4-213ENST00000484112 FER1L6Q2WGJ9 1857 aa13.21□□□□□ -0.3
CPSF4-213ENST00000484112 HTATSF1O43719 755 aaKnown RBP13.2□□□□□ -0.3
CPSF4-213ENST00000484112 SNRPA1P09661 255 aaKnown RBP13.2□□□□□ -0.3
CPSF4-213ENST00000484112 NPR1P16066 1061 aa13.2□□□□□ -0.3
CPSF4-213ENST00000484112 OLFM4Q6UX06 510 aa13.2□□□□□ -0.3
CPSF4-213ENST00000484112 TPTE2Q6XPS3 522 aa13.2□□□□□ -0.3
CPSF4-213ENST00000484112 MCM10Q7L590 875 aa13.2□□□□□ -0.3
CPSF4-213ENST00000484112 LDHDQ86WU2 507 aa13.2□□□□□ -0.3
CPSF4-213ENST00000484112 TAF1DQ9H5J8 278 aaPredicted RBP13.2□□□□□ -0.3
CPSF4-213ENST00000484112 NIP7Q9Y221 180 aaKnown RBP eCLIP13.2□□□□□ -0.3
CPSF4-213ENST00000484112 CEMIPQ8WUJ3 1361 aa13.2□□□□□ -0.3
CPSF4-213ENST00000484112 FOXN1O15353 648 aa13.19□□□□□ -0.3
CPSF4-213ENST00000484112 GTF2E1P29083 439 aaPredicted RBP13.19□□□□□ -0.3
CPSF4-213ENST00000484112 CLEC4GQ6UXB4 293 aa13.19□□□□□ -0.3
CPSF4-213ENST00000484112 C7orf43Q8WVR3 580 aa13.19□□□□□ -0.3
CPSF4-213ENST00000484112 DICER1Q9UPY3 1922 aaKnown RBP13.19□□□□□ -0.3
CPSF4-213ENST00000484112 CACNA1SQ13698 1873 aa13.19□□□□□ -0.3
CPSF4-213ENST00000484112 ZNF541Q9H0D2 1346 aa13.18□□□□□ -0.3
CPSF4-213ENST00000484112 TMEM88BA6NKF7 163 aa13.18□□□□□ -0.3
CPSF4-213ENST00000484112 ANP32CO43423 234 aa13.18□□□□□ -0.3
CPSF4-213ENST00000484112 FKBP4Q02790 459 aaKnown RBP eCLIP13.18□□□□□ -0.3
CPSF4-213ENST00000484112 DCTN1Q14203 1278 aa13.18□□□□□ -0.3
CPSF4-213ENST00000484112 AIDAQ96BJ3 306 aa13.18□□□□□ -0.3
CPSF4-213ENST00000484112 L3MBTL3Q96JM7 780 aaPredicted RBP13.18□□□□□ -0.3
CPSF4-213ENST00000484112 HACL1Q9UJ83 578 aa13.18□□□□□ -0.3
CPSF4-213ENST00000484112 CNTNAP1P78357 1384 aa13.18□□□□□ -0.3
CPSF4-213ENST00000484112 PASKQ96RG2 1323 aa13.17□□□□□ -0.3
CPSF4-213ENST00000484112 EPHX2P34913 555 aa13.17□□□□□ -0.3
CPSF4-213ENST00000484112 VEGFBP49765 207 aa13.17□□□□□ -0.3
CPSF4-213ENST00000484112 RTKN2Q8IZC4 609 aa13.17□□□□□ -0.3
CPSF4-213ENST00000484112 NGEFQ8N5V2 710 aa13.17□□□□□ -0.3
CPSF4-213ENST00000484112 PLEKHF1Q96S99 279 aa13.17□□□□□ -0.3
CPSF4-213ENST00000484112 SIPA1L3O60292 1781 aaPredicted RBP13.17□□□□□ -0.3
CPSF4-213ENST00000484112 MAPK8IP3Q9UPT6 1336 aa13.16□□□□□ -0.3
CPSF4-213ENST00000484112 NBPF26B4DH59 902 aa13.16□□□□□ -0.3
CPSF4-213ENST00000484112 ITGBL1O95965 494 aaPredicted RBP13.16□□□□□ -0.3
CPSF4-213ENST00000484112 WDR43Q15061 677 aaKnown RBP eCLIP13.16□□□□□ -0.3
CPSF4-213ENST00000484112 HLFQ16534 295 aa13.16□□□□□ -0.3
CPSF4-213ENST00000484112 NBPF10Q6P3W6 841 aaKnown RBP13.16□□□□□ -0.3
CPSF4-213ENST00000484112 SYNE4Q8N205 404 aa13.16□□□□□ -0.3
CPSF4-213ENST00000484112 NBPF15Q8N660 670 aa13.16□□□□□ -0.3
CPSF4-213ENST00000484112 RNF123Q5XPI4 1314 aa13.15□□□□□ -0.3
CPSF4-213ENST00000484112 ALDH1B1P30837 517 aa13.15□□□□□ -0.3
CPSF4-213ENST00000484112 IARSP41252 1262 aaKnown RBP13.15□□□□□ -0.3
CPSF4-213ENST00000484112 CTCFP49711 727 aaPredicted RBP13.15□□□□□ -0.3
CPSF4-213ENST00000484112 MAP1SQ66K74 1059 aaPredicted RBP13.15□□□□□ -0.3
CPSF4-213ENST00000484112 MIS18AQ9NYP9 233 aa13.15□□□□□ -0.3
CPSF4-213ENST00000484112 KLRG2A4D1S0 409 aaPredicted RBP13.14□□□□□ -0.31
CPSF4-213ENST00000484112 PNMA8AQ86V59 439 aaPredicted RBP13.14□□□□□ -0.31
CPSF4-213ENST00000484112 NUTM1Q86Y26 1132 aa13.14□□□□□ -0.31
CPSF4-213ENST00000484112 CNTROBQ8N137 903 aa13.14□□□□□ -0.31
CPSF4-213ENST00000484112 PRDM10Q9NQV6 1147 aa13.14□□□□□ -0.31
CPSF4-213ENST00000484112 GJA3Q9Y6H8 435 aa13.14□□□□□ -0.31
CPSF4-213ENST00000484112 BCORQ6W2J9 1755 aa13.14□□□□□ -0.31
CPSF4-213ENST00000484112 FZD9O00144 591 aa13.13□□□□□ -0.31
CPSF4-213ENST00000484112 LBX1P52954 281 aa13.13□□□□□ -0.31
CPSF4-213ENST00000484112 TAF7Q15545 349 aaPredicted RBP13.13□□□□□ -0.31
CPSF4-213ENST00000484112 NFE2L2Q16236 605 aa13.13□□□□□ -0.31
CPSF4-213ENST00000484112 DEFB115Q30KQ5 88 aa13.13□□□□□ -0.31
CPSF4-213ENST00000484112 JDP2Q8WYK2 163 aa13.13□□□□□ -0.31
CPSF4-213ENST00000484112 ABT1Q9ULW3 272 aaKnown RBP13.13□□□□□ -0.31
CPSF4-213ENST00000484112 SCN4AP35499 1836 aa13.12□□□□□ -0.31
CPSF4-213ENST00000484112 TCERG1O14776 1098 aaKnown RBP13.12□□□□□ -0.31
CPSF4-213ENST00000484112 EIF6P56537 245 aaKnown RBP13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms