RNA–Protein interactions for RNA: ENST00000483925.1

PTCD3-214, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 576 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-214ENST00000483925 PRR12Q9ULL5 1215 aa7.11□□□□□ -1.27
PTCD3-214ENST00000483925 USP3Q9Y6I4 520 aa7.11□□□□□ -1.27
PTCD3-214ENST00000483925 C1QTNF9BB2RNN3 333 aa7.1□□□□□ -1.27
PTCD3-214ENST00000483925 FURINP09958 794 aa7.1□□□□□ -1.27
PTCD3-214ENST00000483925 SKIP12755 728 aa7.1□□□□□ -1.27
PTCD3-214ENST00000483925 SAMD5Q5TGI4 173 aa7.1□□□□□ -1.27
PTCD3-214ENST00000483925 FCHSD1Q86WN1 690 aa7.1□□□□□ -1.27
PTCD3-214ENST00000483925 WWC1Q8IX03 1113 aa7.1□□□□□ -1.27
PTCD3-214ENST00000483925 MARK1Q9P0L2 795 aa7.1□□□□□ -1.27
PTCD3-214ENST00000483925 PARP3Q9Y6F1 533 aa7.1□□□□□ -1.27
PTCD3-214ENST00000483925 PCBP4P57723 403 aaKnown RBP7.09□□□□□ -1.27
PTCD3-214ENST00000483925 PSME1Q06323 249 aa7.09□□□□□ -1.27
PTCD3-214ENST00000483925 LAMC2Q13753 1193 aa7.09□□□□□ -1.27
PTCD3-214ENST00000483925 ZNF468Q5VIY5 522 aaPredicted RBP7.09□□□□□ -1.27
PTCD3-214ENST00000483925 NFATC2IPQ8NCF5 419 aa7.09□□□□□ -1.27
PTCD3-214ENST00000483925 SCHIP1Q9P0W5 487 aaPredicted RBP7.09□□□□□ -1.27
PTCD3-214ENST00000483925 COG6Q9Y2V7 657 aa7.09□□□□□ -1.27
PTCD3-214ENST00000483925 GTF2IP78347 998 aa7.08□□□□□ -1.28
PTCD3-214ENST00000483925 XP32Q5T750 250 aa7.08□□□□□ -1.28
PTCD3-214ENST00000483925 CD163Q86VB7 1156 aa7.08□□□□□ -1.28
PTCD3-214ENST00000483925 SERBP1Q8NC51 408 aaKnown RBP eCLIP7.08□□□□□ -1.28
PTCD3-214ENST00000483925 ALG2Q9H553 416 aa7.08□□□□□ -1.28
PTCD3-214ENST00000483925 EFSO43281 561 aa7.07□□□□□ -1.28
PTCD3-214ENST00000483925 TXLNAP40222 546 aa7.07□□□□□ -1.28
PTCD3-214ENST00000483925 TEAD4Q15561 434 aa7.07□□□□□ -1.28
PTCD3-214ENST00000483925 L3MBTL2Q969R5 705 aa7.07□□□□□ -1.28
PTCD3-214ENST00000483925 STRN4Q9NRL3 753 aa7.07□□□□□ -1.28
PTCD3-214ENST00000483925 ZNF358Q9NW07 568 aa7.07□□□□□ -1.28
PTCD3-214ENST00000483925 ALAS2P22557 587 aa7.06□□□□□ -1.28
PTCD3-214ENST00000483925 NOS2P35228 1153 aa7.06□□□□□ -1.28
PTCD3-214ENST00000483925 CHRNA4P43681 627 aa7.06□□□□□ -1.28
PTCD3-214ENST00000483925 KCNA1Q09470 495 aa7.06□□□□□ -1.28
PTCD3-214ENST00000483925 NCOA4Q13772 614 aa7.06□□□□□ -1.28
PTCD3-214ENST00000483925 ZDHHC1Q8WTX9 485 aa7.06□□□□□ -1.28
PTCD3-214ENST00000483925 NEUROD4Q9HD90 331 aa7.06□□□□□ -1.28
PTCD3-214ENST00000483925 AMOTL2Q9Y2J4 779 aa7.06□□□□□ -1.28
PTCD3-214ENST00000483925 ELOA3CA0A087WX78 387 aaPredicted RBP7.05□□□□□ -1.28
PTCD3-214ENST00000483925 ELOA3DA6NLF2 546 aaPredicted RBP7.05□□□□□ -1.28
PTCD3-214ENST00000483925 BRD1O95696 1058 aa7.05□□□□□ -1.28
PTCD3-214ENST00000483925 ELOA3BQ3SY89 546 aa7.05□□□□□ -1.28
PTCD3-214ENST00000483925 LRRC69Q6ZNQ3 347 aa7.05□□□□□ -1.28
PTCD3-214ENST00000483925 ELOA3Q8NG57 546 aa7.05□□□□□ -1.28
PTCD3-214ENST00000483925 ZNF428Q96B54 188 aa7.05□□□□□ -1.28
PTCD3-214ENST00000483925 PLVAPQ9BX97 442 aa7.05□□□□□ -1.28
PTCD3-214ENST00000483925 ZNF232Q9UNY5 417 aa7.05□□□□□ -1.28
PTCD3-214ENST00000483925 EML1O00423 815 aa7.04□□□□□ -1.28
PTCD3-214ENST00000483925 EPHA4P54764 986 aa7.04□□□□□ -1.28
PTCD3-214ENST00000483925 SYT9Q86SS6 491 aa7.04□□□□□ -1.28
PTCD3-214ENST00000483925 SLC9A9Q8IVB4 645 aa7.04□□□□□ -1.28
PTCD3-214ENST00000483925 TNS4Q8IZW8 715 aa7.04□□□□□ -1.28
PTCD3-214ENST00000483925 TRIM11Q96F44 468 aa7.04□□□□□ -1.28
PTCD3-214ENST00000483925 CALR3Q96L12 384 aaKnown RBP7.04□□□□□ -1.28
PTCD3-214ENST00000483925 GPC6Q9Y625 555 aaPredicted RBP7.04□□□□□ -1.28
PTCD3-214ENST00000483925 SERTM1A2A2V5 107 aa7.03□□□□□ -1.28
PTCD3-214ENST00000483925 USP17L5A8MUK1 530 aa7.03□□□□□ -1.28
PTCD3-214ENST00000483925 TRIM50Q86XT4 487 aa7.03□□□□□ -1.28
PTCD3-214ENST00000483925 DEPDC4Q8N2C3 294 aa7.03□□□□□ -1.28
PTCD3-214ENST00000483925 C7orf43Q8WVR3 580 aa7.03□□□□□ -1.28
PTCD3-214ENST00000483925 SPDYE3A6NKU9 549 aa7.02□□□□□ -1.29
PTCD3-214ENST00000483925 SIN3BO75182 1162 aa7.02□□□□□ -1.29
PTCD3-214ENST00000483925 SPATA31C1P0DKV0 1188 aa7.02□□□□□ -1.29
PTCD3-214ENST00000483925 HSP90B1P14625 803 aaKnown RBP7.02□□□□□ -1.29
PTCD3-214ENST00000483925 TBCELQ5QJ74 424 aa7.02□□□□□ -1.29
PTCD3-214ENST00000483925 USTQ9Y2C2 406 aa7.02□□□□□ -1.29
PTCD3-214ENST00000483925 MDFIQ99750 246 aa7.01□□□□□ -1.29
PTCD3-214ENST00000483925 ADARB2-AS1A8MUL3 147 aa7□□□□□ -1.29
PTCD3-214ENST00000483925 ZBTB7BO15156 539 aaPredicted RBP7□□□□□ -1.29
PTCD3-214ENST00000483925 GATA4P43694 442 aa7□□□□□ -1.29
PTCD3-214ENST00000483925 ATP1A2P50993 1020 aa7□□□□□ -1.29
PTCD3-214ENST00000483925 SFSWAPQ12872 951 aaKnown RBP7□□□□□ -1.29
PTCD3-214ENST00000483925 DOC2BQ14184 412 aa7□□□□□ -1.29
PTCD3-214ENST00000483925 CCDC27Q2M243 656 aa7□□□□□ -1.29
PTCD3-214ENST00000483925 PRRT3Q5FWE3 981 aa7□□□□□ -1.29
PTCD3-214ENST00000483925 CCDC102BQ68D86 513 aa7□□□□□ -1.29
PTCD3-214ENST00000483925 Q8N3U1 123 aa7□□□□□ -1.29
PTCD3-214ENST00000483925 TPCN2Q8NHX9 752 aa7□□□□□ -1.29
PTCD3-214ENST00000483925 RHPN1Q8TCX5 695 aa7□□□□□ -1.29
PTCD3-214ENST00000483925 PSMA6P60900 246 aaKnown RBP6.99□□□□□ -1.29
PTCD3-214ENST00000483925 NEUROD1Q13562 356 aa6.99□□□□□ -1.29
PTCD3-214ENST00000483925 SH3PXD2AQ5TCZ1 1133 aa6.99□□□□□ -1.29
PTCD3-214ENST00000483925 C1orf53Q5VUE5 145 aa6.99□□□□□ -1.29
PTCD3-214ENST00000483925 PLEKHM2Q8IWE5 1019 aa6.99□□□□□ -1.29
PTCD3-214ENST00000483925 TNFRSF25Q93038 417 aa6.99□□□□□ -1.29
PTCD3-214ENST00000483925 PBXIP1Q96AQ6 731 aa6.99□□□□□ -1.29
PTCD3-214ENST00000483925 SLC30A3Q99726 388 aa6.99□□□□□ -1.29
PTCD3-214ENST00000483925 SEMA6BQ9H3T3 888 aa6.99□□□□□ -1.29
PTCD3-214ENST00000483925 ANKIB1Q9P2G1 1089 aa6.99□□□□□ -1.29
PTCD3-214ENST00000483925 CHMP3Q9Y3E7 222 aa6.99□□□□□ -1.29
PTCD3-214ENST00000483925 M0R082 166 aa6.98□□□□□ -1.29
PTCD3-214ENST00000483925 ZNF417Q8TAU3 575 aa6.98□□□□□ -1.29
PTCD3-214ENST00000483925 ZNF587Q96SQ5 575 aaPredicted RBP6.98□□□□□ -1.29
PTCD3-214ENST00000483925 USP17L3A6NCW0 530 aa6.97□□□□□ -1.29
PTCD3-214ENST00000483925 USP17L4A6NCW7 530 aa6.97□□□□□ -1.29
PTCD3-214ENST00000483925 CDK11BP21127 795 aaKnown RBP6.97□□□□□ -1.29
PTCD3-214ENST00000483925 HIRAP54198 1017 aaPredicted RBP6.97□□□□□ -1.29
PTCD3-214ENST00000483925 SPEM2Q0P670 501 aa6.97□□□□□ -1.29
PTCD3-214ENST00000483925 HDGFL1Q5TGJ6 251 aa6.97□□□□□ -1.29
PTCD3-214ENST00000483925 USP17L2Q6R6M4 530 aa6.97□□□□□ -1.29
PTCD3-214ENST00000483925 USP17L1Q7RTZ2 530 aa6.97□□□□□ -1.29
PTCD3-214ENST00000483925 CEP63Q96MT8 703 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms