RNA–Protein interactions for RNA: ENST00000479300.1

VCP-205, Transcript of valosin containing protein, humanhuman

TSL 1 (best)

Gene VCP, Length 559 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-205ENST00000479300 ZNF496Q96IT1 587 aaPredicted RBP8.99□□□□□ -0.97
VCP-205ENST00000479300 TBC1D2BQ9UPU7 963 aa8.99□□□□□ -0.97
VCP-205ENST00000479300 BCORQ6W2J9 1755 aa8.99□□□□□ -0.97
VCP-205ENST00000479300 CAMTA2O94983 1202 aa8.98□□□□□ -0.97
VCP-205ENST00000479300 VEGFBP49765 207 aa8.98□□□□□ -0.97
VCP-205ENST00000479300 PRPF40BQ6NWY9 871 aaKnown RBP8.98□□□□□ -0.97
VCP-205ENST00000479300 OLFM4Q6UX06 510 aa8.98□□□□□ -0.97
VCP-205ENST00000479300 L3MBTL3Q96JM7 780 aaPredicted RBP8.98□□□□□ -0.97
VCP-205ENST00000479300 TAOK3Q9H2K8 898 aa8.98□□□□□ -0.97
VCP-205ENST00000479300 TAF1DQ9H5J8 278 aaPredicted RBP8.98□□□□□ -0.97
VCP-205ENST00000479300 PRDM10Q9NQV6 1147 aa8.98□□□□□ -0.97
VCP-205ENST00000479300 ZNF541Q9H0D2 1346 aa8.98□□□□□ -0.97
VCP-205ENST00000479300 HEG1Q9ULI3 1381 aa8.98□□□□□ -0.97
VCP-205ENST00000479300 COL3A1P02461 1466 aaPredicted RBP8.97□□□□□ -0.97
VCP-205ENST00000479300 SCN4AP35499 1836 aa8.97□□□□□ -0.97
VCP-205ENST00000479300 KCNQ3O43525 872 aa8.97□□□□□ -0.97
VCP-205ENST00000479300 A1BGP04217 495 aa8.97□□□□□ -0.97
VCP-205ENST00000479300 SRGNP10124 158 aa8.97□□□□□ -0.97
VCP-205ENST00000479300 PDE6BP35913 854 aa8.97□□□□□ -0.97
VCP-205ENST00000479300 IL17REQ8NFR9 667 aa8.97□□□□□ -0.97
VCP-205ENST00000479300 RNF39Q9H2S5 420 aa8.97□□□□□ -0.97
VCP-205ENST00000479300 WBP1LQ9NX94 342 aa8.97□□□□□ -0.97
VCP-205ENST00000479300 COL4A5P29400 1685 aa8.97□□□□□ -0.97
VCP-205ENST00000479300 SNED1Q8TER0 1413 aa8.97□□□□□ -0.97
VCP-205ENST00000479300 SLC34A2O95436 690 aa8.96□□□□□ -0.98
VCP-205ENST00000479300 STARD3NLO95772 234 aa8.96□□□□□ -0.98
VCP-205ENST00000479300 PIP4K2AP48426 406 aaPredicted RBP8.96□□□□□ -0.98
VCP-205ENST00000479300 STYK1Q6J9G0 422 aa8.96□□□□□ -0.98
VCP-205ENST00000479300 ZNF790Q6PG37 636 aa8.96□□□□□ -0.98
VCP-205ENST00000479300 LDHDQ86WU2 507 aa8.96□□□□□ -0.98
VCP-205ENST00000479300 LTBP1Q14766 1721 aa8.95□□□□□ -0.98
VCP-205ENST00000479300 A0A087WZG4 1122 aa8.95□□□□□ -0.98
VCP-205ENST00000479300 PRAMEF22A3QJZ6 481 aa8.95□□□□□ -0.98
VCP-205ENST00000479300 HSPA8P11142 646 aaKnown RBP8.95□□□□□ -0.98
VCP-205ENST00000479300 IL6STP40189 918 aaPredicted RBP8.95□□□□□ -0.98
VCP-205ENST00000479300 CTCFP49711 727 aaPredicted RBP8.95□□□□□ -0.98
VCP-205ENST00000479300 LBX1P52954 281 aa8.95□□□□□ -0.98
VCP-205ENST00000479300 SLC51AQ86UW1 340 aa8.95□□□□□ -0.98
VCP-205ENST00000479300 CNBD1Q8NA66 436 aa8.95□□□□□ -0.98
VCP-205ENST00000479300 ZNF277Q9NRM2 450 aaPredicted RBP8.95□□□□□ -0.98
VCP-205ENST00000479300 PDZRN3Q9UPQ7 1066 aa8.95□□□□□ -0.98
VCP-205ENST00000479300 ZNF330Q9Y3S2 320 aaPredicted RBP8.95□□□□□ -0.98
VCP-205ENST00000479300 THSD7BQ9C0I4 1608 aa8.94□□□□□ -0.98
VCP-205ENST00000479300 TMEM88BA6NKF7 163 aa8.94□□□□□ -0.98
VCP-205ENST00000479300 FMR1Q06787 632 aaKnown RBP eCLIP8.94□□□□□ -0.983e-7■■■■□ 21.7
VCP-205ENST00000479300 CNKSR1Q969H4 720 aa8.94□□□□□ -0.98
VCP-205ENST00000479300 MASTLQ96GX5 879 aa8.94□□□□□ -0.98
VCP-205ENST00000479300 CEMIPQ8WUJ3 1361 aa8.94□□□□□ -0.98
VCP-205ENST00000479300 KLRG2A4D1S0 409 aaPredicted RBP8.93□□□□□ -0.98
VCP-205ENST00000479300 IQCA1LA6NCM1 817 aa8.93□□□□□ -0.98
VCP-205ENST00000479300 RASSF10A6NK89 507 aa8.93□□□□□ -0.98
VCP-205ENST00000479300 SPDYE4A6NLX3 237 aa8.93□□□□□ -0.98
VCP-205ENST00000479300 PER1O15534 1290 aaPredicted RBP8.93□□□□□ -0.98
VCP-205ENST00000479300 EAPPQ56P03 285 aaPredicted RBP8.93□□□□□ -0.98
VCP-205ENST00000479300 MAP1SQ66K74 1059 aaPredicted RBP8.93□□□□□ -0.98
VCP-205ENST00000479300 TTC5Q8N0Z6 440 aa8.93□□□□□ -0.98
VCP-205ENST00000479300 ABHD8Q96I13 439 aa8.93□□□□□ -0.98
VCP-205ENST00000479300 SETDB2Q96T68 719 aa8.93□□□□□ -0.98
VCP-205ENST00000479300 USP16Q9Y5T5 823 aa8.93□□□□□ -0.98
VCP-205ENST00000479300 KIF7Q2M1P5 1343 aa8.93□□□□□ -0.98
VCP-205ENST00000479300 RNF123Q5XPI4 1314 aa8.93□□□□□ -0.98
VCP-205ENST00000479300 FZD9O00144 591 aa8.92□□□□□ -0.98
VCP-205ENST00000479300 DIAPH1O60610 1272 aaKnown RBP8.92□□□□□ -0.98
VCP-205ENST00000479300 EPHX2P34913 555 aa8.92□□□□□ -0.98
VCP-205ENST00000479300 FKBP4Q02790 459 aaKnown RBP eCLIP8.92□□□□□ -0.98
VCP-205ENST00000479300 FAM161AQ3B820 660 aa8.92□□□□□ -0.98
VCP-205ENST00000479300 CCDC93Q567U6 631 aa8.92□□□□□ -0.98
VCP-205ENST00000479300 DZIP3Q86Y13 1208 aaKnown RBP8.92□□□□□ -0.98
VCP-205ENST00000479300 PHACTR3Q96KR7 559 aa8.92□□□□□ -0.98
VCP-205ENST00000479300 GNAT3A8MTJ3 354 aa8.91□□□□□ -0.98
VCP-205ENST00000479300 NBPF26B4DH59 902 aa8.91□□□□□ -0.98
VCP-205ENST00000479300 NPR1P16066 1061 aa8.91□□□□□ -0.98
VCP-205ENST00000479300 ST5P78524 1137 aa8.91□□□□□ -0.98
VCP-205ENST00000479300 TEFQ10587 303 aa8.91□□□□□ -0.98
VCP-205ENST00000479300 CNGB1Q14028 1251 aaPredicted RBP8.91□□□□□ -0.98
VCP-205ENST00000479300 SOGA3Q5TF21 947 aa8.91□□□□□ -0.98
VCP-205ENST00000479300 NBPF10Q6P3W6 841 aaKnown RBP8.91□□□□□ -0.98
VCP-205ENST00000479300 CNTROBQ8N137 903 aa8.91□□□□□ -0.98
VCP-205ENST00000479300 NBPF15Q8N660 670 aa8.91□□□□□ -0.98
VCP-205ENST00000479300 AIDAQ96BJ3 306 aa8.91□□□□□ -0.98
VCP-205ENST00000479300 FMNL2Q96PY5 1086 aa8.91□□□□□ -0.98
VCP-205ENST00000479300 TEX13AQ9BXU3 409 aaPredicted RBP8.91□□□□□ -0.98
VCP-205ENST00000479300 HACL1Q9UJ83 578 aa8.91□□□□□ -0.98
VCP-205ENST00000479300 ABCC12Q96J65 1359 aa8.9□□□□□ -0.98
VCP-205ENST00000479300 WDR33Q9C0J8 1336 aaKnown RBP8.9□□□□□ -0.98
VCP-205ENST00000479300 POLA2Q14181 598 aa8.9□□□□□ -0.98
VCP-205ENST00000479300 DEFB115Q30KQ5 88 aa8.9□□□□□ -0.98
VCP-205ENST00000479300 CC2D1BQ5T0F9 858 aaKnown RBP8.9□□□□□ -0.98
VCP-205ENST00000479300 NBPF5PQ86XG9 351 aaPredicted RBP8.9□□□□□ -0.98
VCP-205ENST00000479300 CLEC11AQ9Y240 323 aa8.9□□□□□ -0.98
VCP-205ENST00000479300 TNRC18O15417 2968 aaPredicted RBP8.9□□□□□ -0.99
VCP-205ENST00000479300 IARSP41252 1262 aaKnown RBP8.89□□□□□ -0.99
VCP-205ENST00000479300 HLFQ16534 295 aa8.89□□□□□ -0.99
VCP-205ENST00000479300 CLEC4GQ6UXB4 293 aa8.89□□□□□ -0.99
VCP-205ENST00000479300 SYNE4Q8N205 404 aa8.89□□□□□ -0.99
VCP-205ENST00000479300 CFAP53Q96M91 514 aa8.89□□□□□ -0.99
VCP-205ENST00000479300 BCL11AQ9H165 835 aa8.89□□□□□ -0.99
VCP-205ENST00000479300 DDX21Q9NR30 783 aaKnown RBP eCLIP8.89□□□□□ -0.99
VCP-205ENST00000479300 FAM177BA6PVY3 158 aa8.88□□□□□ -0.99
VCP-205ENST00000479300 BTBD11A6QL63 1104 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms