RNA–Protein interactions for RNA: ENST00000478896.2

VCL-205, Transcript of vinculin, humanhuman

TSL 5

Gene VCL, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-205ENST00000478896 PRAMEF22A3QJZ6 481 aa17.64■□□□□ 0.41
VCL-205ENST00000478896 NEFMP07197 916 aa17.64■□□□□ 0.41
VCL-205ENST00000478896 SNRPA1P09661 255 aaKnown RBP17.64■□□□□ 0.41
VCL-205ENST00000478896 DCTN1Q14203 1278 aa17.64■□□□□ 0.41
VCL-205ENST00000478896 ZNF652Q9Y2D9 606 aa17.64■□□□□ 0.41
VCL-205ENST00000478896 VEGFAP15692 232 aaPredicted RBP17.63■□□□□ 0.41
VCL-205ENST00000478896 DPY19L2Q6NUT2 758 aa17.63■□□□□ 0.41
VCL-205ENST00000478896 DNAJC5GQ8N7S2 189 aa17.63■□□□□ 0.41
VCL-205ENST00000478896 CNKSR1Q969H4 720 aa17.63■□□□□ 0.41
VCL-205ENST00000478896 LAMB4A4D0S4 1761 aa17.63■□□□□ 0.41
VCL-205ENST00000478896 ERFEQ4G0M1 354 aa17.62■□□□□ 0.41
VCL-205ENST00000478896 NBPF5PQ86XG9 351 aaPredicted RBP17.62■□□□□ 0.41
VCL-205ENST00000478896 TAOK3Q9H2K8 898 aa17.62■□□□□ 0.41
VCL-205ENST00000478896 SLX4Q8IY92 1834 aa17.62■□□□□ 0.41
VCL-205ENST00000478896 DLG5Q8TDM6 1919 aa17.61■□□□□ 0.41
VCL-205ENST00000478896 STYK1Q6J9G0 422 aa17.61■□□□□ 0.41
VCL-205ENST00000478896 KLRG1Q96E93 195 aa17.61■□□□□ 0.41
VCL-205ENST00000478896 HTATSF1O43719 755 aaKnown RBP17.6■□□□□ 0.41
VCL-205ENST00000478896 SRGNP10124 158 aa17.6■□□□□ 0.41
VCL-205ENST00000478896 SOGA3Q5TF21 947 aa17.6■□□□□ 0.41
VCL-205ENST00000478896 PRPF40BQ6NWY9 871 aaKnown RBP17.6■□□□□ 0.41
VCL-205ENST00000478896 CLEC4GQ6UXB4 293 aa17.6■□□□□ 0.41
VCL-205ENST00000478896 MASTLQ96GX5 879 aa17.6■□□□□ 0.41
VCL-205ENST00000478896 LTBP3Q9NS15 1303 aa17.58■□□□□ 0.4
VCL-205ENST00000478896 TAF7Q15545 349 aaPredicted RBP17.58■□□□□ 0.4
VCL-205ENST00000478896 NIP7Q9Y221 180 aaKnown RBP eCLIP17.58■□□□□ 0.4
VCL-205ENST00000478896 KDM3BQ7LBC6 1761 aa17.58■□□□□ 0.4
VCL-205ENST00000478896 FAM177BA6PVY3 158 aa17.57■□□□□ 0.4
VCL-205ENST00000478896 NBPF26B4DH59 902 aa17.56■□□□□ 0.4
VCL-205ENST00000478896 NBPF10Q6P3W6 841 aaKnown RBP17.56■□□□□ 0.4
VCL-205ENST00000478896 TPTE2Q6XPS3 522 aa17.56■□□□□ 0.4
VCL-205ENST00000478896 NBPF15Q8N660 670 aa17.56■□□□□ 0.4
VCL-205ENST00000478896 MIS18AQ9NYP9 233 aa17.56■□□□□ 0.4
VCL-205ENST00000478896 NPR1P16066 1061 aa17.55■□□□□ 0.4
VCL-205ENST00000478896 GTF2E1P29083 439 aaPredicted RBP17.55■□□□□ 0.4
VCL-205ENST00000478896 CCDC93Q567U6 631 aa17.55■□□□□ 0.4
VCL-205ENST00000478896 PNISRQ8TF01 805 aaKnown RBP17.55■□□□□ 0.4
VCL-205ENST00000478896 NGEFQ8N5V2 710 aa17.54■□□□□ 0.4
VCL-205ENST00000478896 JMYQ8N9B5 988 aa17.54■□□□□ 0.4
VCL-205ENST00000478896 MAPK8IP3Q9UPT6 1336 aa17.53■□□□□ 0.4
VCL-205ENST00000478896 POTECB2RU33 542 aa17.53■□□□□ 0.4
VCL-205ENST00000478896 RGL2O15211 777 aa17.53■□□□□ 0.4
VCL-205ENST00000478896 DDNO94850 711 aaPredicted RBP17.53■□□□□ 0.4
VCL-205ENST00000478896 NUP98P52948 1817 aa17.52■□□□□ 0.4
VCL-205ENST00000478896 HLFQ16534 295 aa17.52■□□□□ 0.4
VCL-205ENST00000478896 KIF6Q6ZMV9 814 aa17.51■□□□□ 0.39
VCL-205ENST00000478896 PNNQ9H307 717 aaKnown RBP17.51■□□□□ 0.39
VCL-205ENST00000478896 FKBP4Q02790 459 aaKnown RBP eCLIP17.5■□□□□ 0.39
VCL-205ENST00000478896 NFE2L2Q16236 605 aa17.5■□□□□ 0.39
VCL-205ENST00000478896 PLEKHF1Q96S99 279 aa17.5■□□□□ 0.39
VCL-205ENST00000478896 THUMPD2Q9BTF0 503 aaKnown RBP17.5■□□□□ 0.39
VCL-205ENST00000478896 NYXQ9GZU5 481 aa17.5■□□□□ 0.39
VCL-205ENST00000478896 RRP7AQ9Y3A4 280 aaKnown RBP17.5■□□□□ 0.39
VCL-205ENST00000478896 SCN4AP35499 1836 aa17.49■□□□□ 0.39
VCL-205ENST00000478896 IQCA1LA6NCM1 817 aa17.49■□□□□ 0.39
VCL-205ENST00000478896 MYL6BP14649 208 aa17.49■□□□□ 0.39
VCL-205ENST00000478896 ALDH1B1P30837 517 aa17.49■□□□□ 0.39
VCL-205ENST00000478896 ZNF277Q9NRM2 450 aaPredicted RBP17.49■□□□□ 0.39
VCL-205ENST00000478896 MAP3K15Q6ZN16 1313 aa17.48■□□□□ 0.39
VCL-205ENST00000478896 KLRG2A4D1S0 409 aaPredicted RBP17.48■□□□□ 0.39
VCL-205ENST00000478896 EIF4A1P60842 406 aaKnown RBP17.48■□□□□ 0.39
VCL-205ENST00000478896 CHADLQ6NUI6 762 aa17.48■□□□□ 0.39
VCL-205ENST00000478896 NUTM1Q86Y26 1132 aa17.48■□□□□ 0.39
VCL-205ENST00000478896 RTKN2Q8IZC4 609 aa17.48■□□□□ 0.39
VCL-205ENST00000478896 C7orf43Q8WVR3 580 aa17.48■□□□□ 0.39
VCL-205ENST00000478896 ABCC12Q96J65 1359 aa17.48■□□□□ 0.39
VCL-205ENST00000478896 ERVV-1B6SEH8 477 aa17.47■□□□□ 0.39
VCL-205ENST00000478896 OLFM4Q6UX06 510 aa17.47■□□□□ 0.39
VCL-205ENST00000478896 ZBTB3Q9H5J0 574 aa17.47■□□□□ 0.39
VCL-205ENST00000478896 POTEIP0CG38 1075 aa17.46■□□□□ 0.39
VCL-205ENST00000478896 POTEJP0CG39 1038 aa17.46■□□□□ 0.39
VCL-205ENST00000478896 GPTP24298 496 aa17.46■□□□□ 0.39
VCL-205ENST00000478896 TTLL7Q6ZT98 887 aa17.46■□□□□ 0.39
VCL-205ENST00000478896 RPGRQ92834 1020 aaKnown RBP17.46■□□□□ 0.39
VCL-205ENST00000478896 ZNF541Q9H0D2 1346 aa17.46■□□□□ 0.38
VCL-205ENST00000478896 IARSP41252 1262 aaKnown RBP17.45■□□□□ 0.38
VCL-205ENST00000478896 L3MBTL3Q96JM7 780 aaPredicted RBP17.45■□□□□ 0.38
VCL-205ENST00000478896 TSPYL4Q9UJ04 414 aa17.45■□□□□ 0.38
VCL-205ENST00000478896 IBTKQ9P2D0 1353 aaPredicted RBP17.44■□□□□ 0.38
VCL-205ENST00000478896 HSPA1AP0DMV8 641 aaKnown RBP17.44■□□□□ 0.38
VCL-205ENST00000478896 HSPA1BP0DMV9 641 aaKnown RBP17.44■□□□□ 0.38
VCL-205ENST00000478896 EAPPQ56P03 285 aaPredicted RBP17.44■□□□□ 0.38
VCL-205ENST00000478896 COL13A1Q5TAT6 717 aaPredicted RBP17.44■□□□□ 0.38
VCL-205ENST00000478896 LDHDQ86WU2 507 aa17.44■□□□□ 0.38
VCL-205ENST00000478896 CREBZFQ9NS37 354 aa17.44■□□□□ 0.38
VCL-205ENST00000478896 UBN2Q6ZU65 1347 aa17.44■□□□□ 0.38
VCL-205ENST00000478896 CRY2Q49AN0 593 aa17.43■□□□□ 0.38
VCL-205ENST00000478896 SYNE4Q8N205 404 aa17.43■□□□□ 0.38
VCL-205ENST00000478896 TAF1DQ9H5J8 278 aaPredicted RBP17.43■□□□□ 0.38
VCL-205ENST00000478896 MKRN1Q9UHC7 482 aaKnown RBP17.43■□□□□ 0.38
VCL-205ENST00000478896 HACL1Q9UJ83 578 aa17.43■□□□□ 0.38
VCL-205ENST00000478896 ERBB4Q15303 1308 aa17.43■□□□□ 0.38
VCL-205ENST00000478896 EIF2S2P20042 333 aaKnown RBP17.42■□□□□ 0.38
VCL-205ENST00000478896 JDP2Q8WYK2 163 aa17.42■□□□□ 0.38
VCL-205ENST00000478896 RNF123Q5XPI4 1314 aa17.42■□□□□ 0.38
VCL-205ENST00000478896 RIC1Q4ADV7 1423 aa17.41■□□□□ 0.38
VCL-205ENST00000478896 RIPK4P57078 832 aa17.41■□□□□ 0.38
VCL-205ENST00000478896 SUSD4Q5VX71 490 aa17.41■□□□□ 0.38
VCL-205ENST00000478896 GIGYF2Q6Y7W6 1299 aaKnown RBP17.41■□□□□ 0.38
VCL-205ENST00000478896 PPP1R42Q7Z4L9 355 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms