RNA–Protein interactions for RNA: ENST00000477572.1

VPS50-213, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-213ENST00000477572 NEUROD4Q9HD90 331 aa9.61□□□□□ -0.87
VPS50-213ENST00000477572 STRN4Q9NRL3 753 aa9.61□□□□□ -0.87
VPS50-213ENST00000477572 GGA1Q9UJY5 639 aa9.61□□□□□ -0.87
VPS50-213ENST00000477572 CNTNAP5Q8WYK1 1306 aa9.6□□□□□ -0.87
VPS50-213ENST00000477572 ANKMY2Q8IV38 441 aa9.6□□□□□ -0.87
VPS50-213ENST00000477572 RHPN1Q8TCX5 695 aa9.6□□□□□ -0.87
VPS50-213ENST00000477572 C7orf43Q8WVR3 580 aa9.6□□□□□ -0.87
VPS50-213ENST00000477572 PHACTR1Q9C0D0 580 aa9.6□□□□□ -0.87
VPS50-213ENST00000477572 CHMP3Q9Y3E7 222 aa9.6□□□□□ -0.87
VPS50-213ENST00000477572 DNMT3AQ9Y6K1 912 aaPredicted RBP9.6□□□□□ -0.87
VPS50-213ENST00000477572 ATAD2Q6PL18 1390 aa9.6□□□□□ -0.87
VPS50-213ENST00000477572 NEURL1BA8MQ27 555 aa9.59□□□□□ -0.87
VPS50-213ENST00000477572 GRIN2CQ14957 1233 aa9.59□□□□□ -0.87
VPS50-213ENST00000477572 SCARF2Q96GP6 870 aaPredicted RBP9.59□□□□□ -0.87
VPS50-213ENST00000477572 NGLY1Q96IV0 654 aa9.59□□□□□ -0.87
VPS50-213ENST00000477572 HSH2DQ96JZ2 352 aa9.59□□□□□ -0.87
VPS50-213ENST00000477572 GDF11O95390 407 aa9.58□□□□□ -0.88
VPS50-213ENST00000477572 KCTD17Q8N5Z5 321 aa9.58□□□□□ -0.88
VPS50-213ENST00000477572 EDARADDQ8WWZ3 215 aa9.58□□□□□ -0.88
VPS50-213ENST00000477572 RNF225M0QZC1 329 aaPredicted RBP9.57□□□□□ -0.88
VPS50-213ENST00000477572 FAM157BP0CG42 384 aa9.57□□□□□ -0.88
VPS50-213ENST00000477572 PCBP4P57723 403 aaKnown RBP9.57□□□□□ -0.88
VPS50-213ENST00000477572 TMEM151AQ8N4L1 468 aa9.57□□□□□ -0.88
VPS50-213ENST00000477572 GOLGA6L1Q8N7Z2 621 aa9.57□□□□□ -0.88
VPS50-213ENST00000477572 RRAGCQ9HB90 399 aa9.57□□□□□ -0.88
VPS50-213ENST00000477572 GDF2Q9UK05 429 aaPredicted RBP9.57□□□□□ -0.88
VPS50-213ENST00000477572 FAM196BA6NMK8 535 aa9.56□□□□□ -0.88
VPS50-213ENST00000477572 AMPD1P23109 780 aa9.56□□□□□ -0.88
VPS50-213ENST00000477572 SNRPNP63162 240 aaKnown RBP9.56□□□□□ -0.88
VPS50-213ENST00000477572 ZNF280CQ8ND82 737 aa9.56□□□□□ -0.88
VPS50-213ENST00000477572 ZMYND15Q9H091 742 aa9.56□□□□□ -0.88
VPS50-213ENST00000477572 MARK1Q9P0L2 795 aa9.56□□□□□ -0.88
VPS50-213ENST00000477572 KLF15Q9UIH9 416 aa9.56□□□□□ -0.88
VPS50-213ENST00000477572 PRR12Q9ULL5 1215 aa9.56□□□□□ -0.88
VPS50-213ENST00000477572 SFSWAPQ12872 951 aaKnown RBP9.55□□□□□ -0.88
VPS50-213ENST00000477572 SAMD5Q5TGI4 173 aa9.55□□□□□ -0.88
VPS50-213ENST00000477572 ALDH16A1Q8IZ83 802 aa9.55□□□□□ -0.88
VPS50-213ENST00000477572 ARXQ96QS3 562 aa9.55□□□□□ -0.88
VPS50-213ENST00000477572 C2orf49Q9BVC5 232 aaPredicted RBP9.55□□□□□ -0.88
VPS50-213ENST00000477572 GTF3C3Q9Y5Q9 886 aa9.55□□□□□ -0.88
VPS50-213ENST00000477572 EFSO43281 561 aa9.54□□□□□ -0.88
VPS50-213ENST00000477572 ARAFP10398 606 aa9.54□□□□□ -0.88
VPS50-213ENST00000477572 SLCO4C1Q6ZQN7 724 aa9.54□□□□□ -0.88
VPS50-213ENST00000477572 PODNQ7Z5L7 613 aa9.54□□□□□ -0.88
VPS50-213ENST00000477572 BEND7Q8N7W2 519 aaPredicted RBP9.54□□□□□ -0.88
VPS50-213ENST00000477572 CEP63Q96MT8 703 aa9.54□□□□□ -0.88
VPS50-213ENST00000477572 HIRAP54198 1017 aaPredicted RBP9.53□□□□□ -0.88
VPS50-213ENST00000477572 C1orf53Q5VUE5 145 aa9.53□□□□□ -0.88
VPS50-213ENST00000477572 SUSD3Q96L08 255 aa9.53□□□□□ -0.88
VPS50-213ENST00000477572 LRRC4BQ9NT99 713 aa9.53□□□□□ -0.88
VPS50-213ENST00000477572 FAM182BQ5T319 152 aa9.52□□□□□ -0.89
VPS50-213ENST00000477572 POTEAQ6S8J7 498 aa9.52□□□□□ -0.89
VPS50-213ENST00000477572 ARID3CA6NKF2 412 aa9.51□□□□□ -0.89
VPS50-213ENST00000477572 EPXP11678 715 aa9.51□□□□□ -0.89
VPS50-213ENST00000477572 ADH6P28332 368 aa9.51□□□□□ -0.89
VPS50-213ENST00000477572 RAB44Q7Z6P3 723 aaPredicted RBP9.51□□□□□ -0.89
VPS50-213ENST00000477572 FCHSD1Q86WN1 690 aa9.51□□□□□ -0.89
VPS50-213ENST00000477572 FAM200AQ8TCP9 573 aa9.51□□□□□ -0.89
VPS50-213ENST00000477572 SLC30A3Q99726 388 aa9.51□□□□□ -0.89
VPS50-213ENST00000477572 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.5□□□□□ -0.89
VPS50-213ENST00000477572 PHF20L1A8MW92 1017 aa9.5□□□□□ -0.89
VPS50-213ENST00000477572 BTBD6Q96KE9 485 aa9.5□□□□□ -0.89
VPS50-213ENST00000477572 BRD7Q9NPI1 651 aa9.5□□□□□ -0.89
VPS50-213ENST00000477572 ANKIB1Q9P2G1 1089 aa9.5□□□□□ -0.89
VPS50-213ENST00000477572 NOVA2Q9UNW9 492 aaKnown RBP9.5□□□□□ -0.89
VPS50-213ENST00000477572 GPC6Q9Y625 555 aaPredicted RBP9.5□□□□□ -0.89
VPS50-213ENST00000477572 LAMC2Q13753 1193 aa9.49□□□□□ -0.89
VPS50-213ENST00000477572 ZNF468Q5VIY5 522 aaPredicted RBP9.49□□□□□ -0.89
VPS50-213ENST00000477572 KANK3Q6NY19 840 aa9.49□□□□□ -0.89
VPS50-213ENST00000477572 SYT9Q86SS6 491 aa9.49□□□□□ -0.89
VPS50-213ENST00000477572 STAG2Q8N3U4 1231 aa9.49□□□□□ -0.89
VPS50-213ENST00000477572 IGFBP4P22692 258 aa9.48□□□□□ -0.89
VPS50-213ENST00000477572 TYRO3Q06418 890 aa9.48□□□□□ -0.89
VPS50-213ENST00000477572 PRIMPOLQ96LW4 560 aa9.48□□□□□ -0.89
VPS50-213ENST00000477572 KLK14Q9P0G3 267 aa9.47□□□□□ -0.89
VPS50-213ENST00000477572 HOXB4P17483 251 aaPredicted RBP9.46□□□□□ -0.9
VPS50-213ENST00000477572 WEE1P30291 646 aa9.46□□□□□ -0.9
VPS50-213ENST00000477572 SPEM2Q0P670 501 aa9.46□□□□□ -0.9
VPS50-213ENST00000477572 GPAT2Q6NUI2 795 aa9.46□□□□□ -0.9
VPS50-213ENST00000477572 CHSY3Q70JA7 882 aa9.46□□□□□ -0.9
VPS50-213ENST00000477572 BTLAQ7Z6A9 289 aa9.46□□□□□ -0.9
VPS50-213ENST00000477572 STK32AQ8WU08 396 aa9.46□□□□□ -0.9
VPS50-213ENST00000477572 DCAF5Q96JK2 942 aa9.46□□□□□ -0.9
VPS50-213ENST00000477572 MKL2Q9ULH7 1088 aa9.46□□□□□ -0.9
VPS50-213ENST00000477572 KCNH4Q9UQ05 1017 aa9.46□□□□□ -0.9
VPS50-213ENST00000477572 PRMT3O60678 531 aa9.45□□□□□ -0.9
VPS50-213ENST00000477572 RTN1Q16799 776 aa9.45□□□□□ -0.9
VPS50-213ENST00000477572 VTI1AQ96AJ9 217 aa9.45□□□□□ -0.9
VPS50-213ENST00000477572 SUV39H2Q9H5I1 410 aa9.45□□□□□ -0.9
VPS50-213ENST00000477572 AVENQ9NQS1 362 aaPredicted RBP9.45□□□□□ -0.9
VPS50-213ENST00000477572 ZMIZ1Q9ULJ6 1067 aa9.45□□□□□ -0.9
VPS50-213ENST00000477572 BCS1LQ9Y276 419 aa9.45□□□□□ -0.9
VPS50-213ENST00000477572 LINC00114Q6XXX2 140 aa9.44□□□□□ -0.9
VPS50-213ENST00000477572 CCDC97Q96F63 343 aaPredicted RBP9.44□□□□□ -0.9
VPS50-213ENST00000477572 SRPK2P78362 688 aaKnown RBP9.43□□□□□ -0.9
VPS50-213ENST00000477572 DGKZQ13574 1117 aa9.43□□□□□ -0.9
VPS50-213ENST00000477572 COL8A1P27658 744 aa9.42□□□□□ -0.9
VPS50-213ENST00000477572 TBC1D8BQ0IIM8 1120 aa9.42□□□□□ -0.9
VPS50-213ENST00000477572 BHMTQ93088 406 aa9.42□□□□□ -0.9
VPS50-213ENST00000477572 IGFLR1Q9H665 355 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms