RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 NBPF14Q5TI25 921 aa15.05■□□□□ -0
SYNE1-222ENST00000474655 NBPF10Q6P3W6 841 aaKnown RBP15.05■□□□□ -0
SYNE1-222ENST00000474655 NBPF15Q8N660 670 aa15.05■□□□□ -0
SYNE1-222ENST00000474655 SNX21Q969T3 373 aa15.05■□□□□ -0
SYNE1-222ENST00000474655 SUCLG2Q96I99 432 aa15.05■□□□□ -0
SYNE1-222ENST00000474655 CASC1Q6TDU7 716 aa15.04■□□□□ -0
SYNE1-222ENST00000474655 USP35Q9P2H5 1018 aa15.04■□□□□ -0
SYNE1-222ENST00000474655 NWD2Q9ULI1 1742 aa15.04■□□□□ -0
SYNE1-222ENST00000474655 USP42Q9H9J4 1324 aaKnown RBP15.04■□□□□ -0
SYNE1-222ENST00000474655 VSIG10Q8N0Z9 540 aa15.03■□□□□ -0
SYNE1-222ENST00000474655 MYD88Q99836 296 aa15.03■□□□□ -0
SYNE1-222ENST00000474655 USP26Q9BXU7 913 aa15.03■□□□□ -0
SYNE1-222ENST00000474655 TMOD3Q9NYL9 352 aa15.03■□□□□ -0
SYNE1-222ENST00000474655 ERC1Q8IUD2 1116 aa15.03■□□□□ -0
SYNE1-222ENST00000474655 BICC1Q9H694 974 aaKnown RBP15.03■□□□□ -0
SYNE1-222ENST00000474655 ANTXR1Q9H6X2 564 aa15.03■□□□□ -0
SYNE1-222ENST00000474655 IL1RAPL2Q9NP60 686 aa15.02□□□□□ -0.01
SYNE1-222ENST00000474655 TJP1Q07157 1748 aa15.01□□□□□ -0.01
SYNE1-222ENST00000474655 BCL9O00512 1426 aa15.01□□□□□ -0.01
SYNE1-222ENST00000474655 PIP4K2AP48426 406 aaPredicted RBP15.01□□□□□ -0.01
SYNE1-222ENST00000474655 PI4K2BQ8TCG2 481 aa15.01□□□□□ -0.01
SYNE1-222ENST00000474655 CDCA7Q9BWT1 371 aaPredicted RBP15.01□□□□□ -0.01
SYNE1-222ENST00000474655 TEX13AQ9BXU3 409 aaPredicted RBP15.01□□□□□ -0.01
SYNE1-222ENST00000474655 BCL11AQ9H165 835 aa15.01□□□□□ -0.01
SYNE1-222ENST00000474655 RABL6Q3YEC7 729 aaPredicted RBP15.01□□□□□ -0.01
SYNE1-222ENST00000474655 PIGBQ92521 554 aa15.01□□□□□ -0.01
SYNE1-222ENST00000474655 THRAP3Q9Y2W1 955 aaKnown RBP15.01□□□□□ -0.01
SYNE1-222ENST00000474655 TTC41PQ6P2S7 1318 aa15□□□□□ -0.01
SYNE1-222ENST00000474655 PTCD1O75127 700 aaKnown RBP15□□□□□ -0.01
SYNE1-222ENST00000474655 REC8O95072 547 aa15□□□□□ -0.01
SYNE1-222ENST00000474655 CASP7P55210 303 aa15□□□□□ -0.01
SYNE1-222ENST00000474655 NBR1Q14596 966 aa15□□□□□ -0.01
SYNE1-222ENST00000474655 TSHZ3Q63HK5 1081 aa15□□□□□ -0.01
SYNE1-222ENST00000474655 ERC2O15083 957 aa14.99□□□□□ -0.01
SYNE1-222ENST00000474655 A1BGP04217 495 aa14.99□□□□□ -0.01
SYNE1-222ENST00000474655 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.99□□□□□ -0.01
SYNE1-222ENST00000474655 SPATA31A1Q5TZJ5 1347 aa14.99□□□□□ -0.01
SYNE1-222ENST00000474655 EXOC5O00471 708 aa14.98□□□□□ -0.01
SYNE1-222ENST00000474655 NUTM1Q86Y26 1132 aa14.98□□□□□ -0.01
SYNE1-222ENST00000474655 CLASRPQ8N2M8 674 aaKnown RBP14.98□□□□□ -0.01
SYNE1-222ENST00000474655 ATG3Q9NT62 314 aa14.98□□□□□ -0.01
SYNE1-222ENST00000474655 SLIT2O94813 1529 aa14.98□□□□□ -0.01
SYNE1-222ENST00000474655 DOT1LQ8TEK3 1739 aa14.98□□□□□ -0.01
SYNE1-222ENST00000474655 H7C1W4 665 aa14.98□□□□□ -0.01
SYNE1-222ENST00000474655 EPB41L2O43491 1005 aaKnown RBP14.98□□□□□ -0.01
SYNE1-222ENST00000474655 TOM1O60784 492 aa14.98□□□□□ -0.01
SYNE1-222ENST00000474655 CHMLP26374 656 aa14.98□□□□□ -0.01
SYNE1-222ENST00000474655 EPHA10Q5JZY3 1008 aa14.98□□□□□ -0.01
SYNE1-222ENST00000474655 TTLL7Q6ZT98 887 aa14.98□□□□□ -0.01
SYNE1-222ENST00000474655 HSCBQ8IWL3 235 aa14.98□□□□□ -0.01
SYNE1-222ENST00000474655 ASAP1Q9ULH1 1129 aa14.98□□□□□ -0.01
SYNE1-222ENST00000474655 PA2G4Q9UQ80 394 aaKnown RBP14.98□□□□□ -0.01
SYNE1-222ENST00000474655 SASH1O94885 1247 aa14.97□□□□□ -0.01
SYNE1-222ENST00000474655 ESYT1Q9BSJ8 1104 aa14.97□□□□□ -0.01
SYNE1-222ENST00000474655 COPRSQ9NQ92 184 aa14.97□□□□□ -0.01
SYNE1-222ENST00000474655 KAT6BQ8WYB5 2073 aa14.96□□□□□ -0.01
SYNE1-222ENST00000474655 RFX5P48382 616 aaPredicted RBP14.96□□□□□ -0.01
SYNE1-222ENST00000474655 OS9Q13438 667 aaPredicted RBP14.96□□□□□ -0.01
SYNE1-222ENST00000474655 UNC5CLQ8IV45 518 aa14.96□□□□□ -0.01
SYNE1-222ENST00000474655 A0A087WZG4 1122 aa14.96□□□□□ -0.02
SYNE1-222ENST00000474655 ATP5J2-PTCD1G3V325 749 aa14.96□□□□□ -0.02
SYNE1-222ENST00000474655 G3BP1Q13283 466 aaKnown RBP eCLIP14.96□□□□□ -0.02
SYNE1-222ENST00000474655 RABEP1Q15276 862 aa14.96□□□□□ -0.02
SYNE1-222ENST00000474655 NFKBIBQ15653 356 aa14.96□□□□□ -0.02
SYNE1-222ENST00000474655 CCDC191Q8NCU4 936 aa14.96□□□□□ -0.02
SYNE1-222ENST00000474655 CICQ96RK0 1608 aaPredicted RBP14.95□□□□□ -0.02
SYNE1-222ENST00000474655 TRIM6-TRIM34B2RNG4 842 aa14.95□□□□□ -0.02
SYNE1-222ENST00000474655 GLRX3O76003 335 aaKnown RBP14.95□□□□□ -0.02
SYNE1-222ENST00000474655 UBE3BQ7Z3V4 1068 aa14.95□□□□□ -0.02
SYNE1-222ENST00000474655 IL17RAQ96F46 866 aa14.95□□□□□ -0.02
SYNE1-222ENST00000474655 STARD3NLO95772 234 aa14.94□□□□□ -0.02
SYNE1-222ENST00000474655 TRIM28Q13263 835 aaKnown RBP14.94□□□□□ -0.02
SYNE1-222ENST00000474655 RTL5Q5HYW3 569 aaPredicted RBP14.94□□□□□ -0.02
SYNE1-222ENST00000474655 RILPL2Q969X0 211 aa14.94□□□□□ -0.02
SYNE1-222ENST00000474655 ECHDC1Q9NTX5 307 aa14.94□□□□□ -0.02
SYNE1-222ENST00000474655 CWC25Q9NXE8 425 aaPredicted RBP14.94□□□□□ -0.02
SYNE1-222ENST00000474655 ANKRD36CQ5JPF3 1778 aa14.94□□□□□ -0.02
SYNE1-222ENST00000474655 SPATA31A5Q5VU36 1347 aa14.94□□□□□ -0.02
SYNE1-222ENST00000474655 SPATA31A7Q8IWB4 1347 aa14.94□□□□□ -0.02
SYNE1-222ENST00000474655 ADAMTS2O95450 1211 aa14.93□□□□□ -0.02
SYNE1-222ENST00000474655 DDIT3P35638 169 aa14.93□□□□□ -0.02
SYNE1-222ENST00000474655 PTPN12Q05209 780 aaKnown RBP14.93□□□□□ -0.02
SYNE1-222ENST00000474655 BARGINQ6ZT62 677 aa14.93□□□□□ -0.02
SYNE1-222ENST00000474655 DNAJC10Q8IXB1 793 aa14.93□□□□□ -0.02
SYNE1-222ENST00000474655 ISCA1Q9BUE6 129 aa14.93□□□□□ -0.02
SYNE1-222ENST00000474655 SLKQ9H2G2 1235 aaPredicted RBP14.93□□□□□ -0.02
SYNE1-222ENST00000474655 FOXO4P98177 505 aa14.93□□□□□ -0.02
SYNE1-222ENST00000474655 CNTROBQ8N137 903 aa14.93□□□□□ -0.02
SYNE1-222ENST00000474655 EAF2Q96CJ1 260 aaPredicted RBP14.93□□□□□ -0.02
SYNE1-222ENST00000474655 GPATCH3Q96I76 525 aa14.93□□□□□ -0.02
SYNE1-222ENST00000474655 CD2BP2O95400 341 aaKnown RBP14.92□□□□□ -0.02
SYNE1-222ENST00000474655 IFIT2P09913 472 aaKnown RBP14.92□□□□□ -0.02
SYNE1-222ENST00000474655 TCIRG1Q13488 830 aa14.92□□□□□ -0.02
SYNE1-222ENST00000474655 SLC4A9Q96Q91 983 aa14.92□□□□□ -0.02
SYNE1-222ENST00000474655 RBM42Q9BTD8 480 aaKnown RBP14.92□□□□□ -0.02
SYNE1-222ENST00000474655 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.92□□□□□ -0.02
SYNE1-222ENST00000474655 K7ELQ4 463 aaPredicted RBP14.91□□□□□ -0.02
SYNE1-222ENST00000474655 CYP19A1P11511 503 aaPredicted RBP14.91□□□□□ -0.02
SYNE1-222ENST00000474655 ZBTB3Q9H5J0 574 aa14.91□□□□□ -0.02
SYNE1-222ENST00000474655 NUP98P52948 1817 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms