RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 SASH1O94885 1247 aa23.18■■□□□ 1.3
VIM-203ENST00000469543 AACSQ86V21 672 aa23.18■■□□□ 1.3
VIM-203ENST00000469543 GPT2Q8TD30 523 aa23.18■■□□□ 1.3
VIM-203ENST00000469543 TMEM94Q12767 1356 aa23.18■■□□□ 1.3
VIM-203ENST00000469543 PHKG2P15735 406 aa23.17■■□□□ 1.3
VIM-203ENST00000469543 EPHA10Q5JZY3 1008 aa23.17■■□□□ 1.3
VIM-203ENST00000469543 CNTROBQ8N137 903 aa23.17■■□□□ 1.3
VIM-203ENST00000469543 XAGE3Q8WTP9 111 aa23.17■■□□□ 1.3
VIM-203ENST00000469543 LINS1Q8NG48 757 aa23.17■■□□□ 1.3
VIM-203ENST00000469543 CYP27B1O15528 508 aa23.16■■□□□ 1.3
VIM-203ENST00000469543 HSPA2P54652 639 aa23.16■■□□□ 1.3
VIM-203ENST00000469543 PTH1RQ03431 593 aa23.16■■□□□ 1.3
VIM-203ENST00000469543 EAF2Q96CJ1 260 aaPredicted RBP23.16■■□□□ 1.3
VIM-203ENST00000469543 LSG1Q9H089 658 aaKnown RBP23.16■■□□□ 1.3
VIM-203ENST00000469543 SNX14Q9Y5W7 946 aa23.16■■□□□ 1.3
VIM-203ENST00000469543 AOX1Q06278 1338 aa23.16■■□□□ 1.3
VIM-203ENST00000469543 KDM6AO15550 1401 aaPredicted RBP23.16■■□□□ 1.3
VIM-203ENST00000469543 NCAPD2Q15021 1401 aa23.16■■□□□ 1.3
VIM-203ENST00000469543 MTX1Q13505 466 aa23.16■■□□□ 1.3
VIM-203ENST00000469543 COL9A3Q14050 684 aaPredicted RBP23.16■■□□□ 1.3
VIM-203ENST00000469543 ALDH1L1O75891 902 aa23.16■■□□□ 1.3
VIM-203ENST00000469543 TPRNQ4KMQ1 711 aa23.16■■□□□ 1.3
VIM-203ENST00000469543 N4BP2Q86UW6 1770 aaPredicted RBP23.15■■□□□ 1.3
VIM-203ENST00000469543 IFIT2P09913 472 aaKnown RBP23.15■■□□□ 1.3
VIM-203ENST00000469543 ANAPC15P60006 121 aa23.15■■□□□ 1.3
VIM-203ENST00000469543 MYD88Q99836 296 aa23.15■■□□□ 1.3
VIM-203ENST00000469543 GDPD2Q9HCC8 539 aa23.15■■□□□ 1.3
VIM-203ENST00000469543 PHRF1Q9P1Y6 1649 aaKnown RBP23.15■■□□□ 1.3
VIM-203ENST00000469543 MEGF6O75095 1541 aa23.14■■□□□ 1.3
VIM-203ENST00000469543 TATP17735 454 aaPredicted RBP23.14■■□□□ 1.29
VIM-203ENST00000469543 HSP90AB4PQ58FF6 505 aa23.14■■□□□ 1.29
VIM-203ENST00000469543 ECHDC1Q9NTX5 307 aa23.14■■□□□ 1.29
VIM-203ENST00000469543 TRPM3Q9HCF6 1732 aaPredicted RBP23.14■■□□□ 1.29
VIM-203ENST00000469543 ATP5J2-PTCD1G3V325 749 aa23.13■■□□□ 1.29
VIM-203ENST00000469543 PTCD1O75127 700 aaKnown RBP23.13■■□□□ 1.29
VIM-203ENST00000469543 CUL4AQ13619 759 aa23.13■■□□□ 1.29
VIM-203ENST00000469543 CHMP4AQ9BY43 222 aa23.13■■□□□ 1.29
VIM-203ENST00000469543 RAD50Q92878 1312 aa23.13■■□□□ 1.29
VIM-203ENST00000469543 GLRX3O76003 335 aaKnown RBP23.13■■□□□ 1.29
VIM-203ENST00000469543 ADCK5Q3MIX3 580 aa23.13■■□□□ 1.29
VIM-203ENST00000469543 ZSCAN23Q3MJ62 389 aa23.12■■□□□ 1.29
VIM-203ENST00000469543 FAM227BQ96M60 508 aa23.12■■□□□ 1.29
VIM-203ENST00000469543 NDUFB9Q9Y6M9 179 aa23.12■■□□□ 1.29
VIM-203ENST00000469543 EDC3Q96F86 508 aaKnown RBP23.12■■□□□ 1.29
VIM-203ENST00000469543 DIAPH3Q9NSV4 1193 aa23.12■■□□□ 1.29
VIM-203ENST00000469543 NEURL1BA8MQ27 555 aa23.11■■□□□ 1.29
VIM-203ENST00000469543 DDX58O95786 925 aaKnown RBP23.11■■□□□ 1.29
VIM-203ENST00000469543 BOLA2Q9H3K6 86 aa23.11■■□□□ 1.29
VIM-203ENST00000469543 KIAA1211Q6ZU35 1233 aa23.11■■□□□ 1.29
VIM-203ENST00000469543 AK2P54819 239 aa23.1■■□□□ 1.29
VIM-203ENST00000469543 BRD1O95696 1058 aa23.1■■□□□ 1.29
VIM-203ENST00000469543 CHGBP05060 677 aa23.1■■□□□ 1.29
VIM-203ENST00000469543 PRPF40BQ6NWY9 871 aaKnown RBP23.1■■□□□ 1.29
VIM-203ENST00000469543 IFNL2Q8IZJ0 200 aa23.1■■□□□ 1.29
VIM-203ENST00000469543 G3BP1Q13283 466 aaKnown RBP eCLIP23.09■■□□□ 1.29
VIM-203ENST00000469543 GCKRQ14397 625 aa23.09■■□□□ 1.29
VIM-203ENST00000469543 TTC41PQ6P2S7 1318 aa23.09■■□□□ 1.29
VIM-203ENST00000469543 CASTP20810 708 aaKnown RBP23.09■■□□□ 1.29
VIM-203ENST00000469543 MCM2P49736 904 aa23.09■■□□□ 1.29
VIM-203ENST00000469543 ANKRD13DQ6ZTN6 518 aa23.09■■□□□ 1.29
VIM-203ENST00000469543 TMEM63CQ9P1W3 806 aa23.09■■□□□ 1.29
VIM-203ENST00000469543 MST1RQ04912 1400 aa23.08■■□□□ 1.29
VIM-203ENST00000469543 ERBB4Q15303 1308 aa23.08■■□□□ 1.29
VIM-203ENST00000469543 LARGE1O95461 756 aa23.08■■□□□ 1.29
VIM-203ENST00000469543 RUFY3Q7L099 469 aa23.08■■□□□ 1.29
VIM-203ENST00000469543 CCDC9Q9Y3X0 531 aaKnown RBP23.08■■□□□ 1.29
VIM-203ENST00000469543 PTMSP20962 102 aa23.08■■□□□ 1.29
VIM-203ENST00000469543 PRIM1P49642 420 aaKnown RBP23.08■■□□□ 1.29
VIM-203ENST00000469543 LARP1Q6PKG0 1096 aaKnown RBP23.07■■□□□ 1.28
VIM-203ENST00000469543 LRP10Q7Z4F1 713 aa23.07■■□□□ 1.28
VIM-203ENST00000469543 TTC5Q8N0Z6 440 aa23.07■■□□□ 1.28
VIM-203ENST00000469543 USP42Q9H9J4 1324 aaKnown RBP23.07■■□□□ 1.28
VIM-203ENST00000469543 UBE3BQ7Z3V4 1068 aa23.06■■□□□ 1.28
VIM-203ENST00000469543 TTC14Q96N46 770 aa23.06■■□□□ 1.28
VIM-203ENST00000469543 NEXNQ0ZGT2 675 aa23.06■■□□□ 1.28
VIM-203ENST00000469543 NASPP49321 788 aaPredicted RBP23.05■■□□□ 1.28
VIM-203ENST00000469543 TAF6LQ9Y6J9 622 aa23.05■■□□□ 1.28
VIM-203ENST00000469543 UTYO14607 1347 aa23.05■■□□□ 1.28
VIM-203ENST00000469543 METTL22Q9BUU2 404 aaPredicted RBP23.05■■□□□ 1.28
VIM-203ENST00000469543 SYCE3A1L190 88 aa23.05■■□□□ 1.28
VIM-203ENST00000469543 GADD45BO75293 160 aaPredicted RBP23.05■■□□□ 1.28
VIM-203ENST00000469543 INTS4Q96HW7 963 aaKnown RBP23.05■■□□□ 1.28
VIM-203ENST00000469543 TCEANC2Q96MN5 208 aa23.05■■□□□ 1.28
VIM-203ENST00000469543 RBSNQ9H1K0 784 aa23.05■■□□□ 1.28
VIM-203ENST00000469543 SNRPA1P09661 255 aaKnown RBP23.04■■□□□ 1.28
VIM-203ENST00000469543 CABP4P57796 275 aa23.04■■□□□ 1.28
VIM-203ENST00000469543 NMIQ13287 307 aaPredicted RBP23.04■■□□□ 1.28
VIM-203ENST00000469543 JAKMIP1Q96N16 626 aaKnown RBP23.04■■□□□ 1.28
VIM-203ENST00000469543 SIPA1L3O60292 1781 aaPredicted RBP23.04■■□□□ 1.28
VIM-203ENST00000469543 OVOS2A0A0G2JMS6 1433 aa23.04■■□□□ 1.28
VIM-203ENST00000469543 IL17RAQ96F46 866 aa23.04■■□□□ 1.28
VIM-203ENST00000469543 ERC1Q8IUD2 1116 aa23.03■■□□□ 1.28
VIM-203ENST00000469543 DCAF5Q96JK2 942 aa23.03■■□□□ 1.28
VIM-203ENST00000469543 C5P01031 1676 aa23.03■■□□□ 1.28
VIM-203ENST00000469543 A0A0D9SFI3 127 aa23.03■■□□□ 1.28
VIM-203ENST00000469543 ISY1Q9ULR0 285 aaKnown RBP23.03■■□□□ 1.28
VIM-203ENST00000469543 EVI5LQ96CN4 794 aa23.02■■□□□ 1.28
VIM-203ENST00000469543 ALS2Q96Q42 1657 aa23.02■■□□□ 1.28
VIM-203ENST00000469543 GPATCH3Q96I76 525 aa23.01■■□□□ 1.27
VIM-203ENST00000469543 STRCP1A6NGW2 1772 aa23■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms