RNA–Protein interactions for RNA: ENST00000469154.5

SMARCD3-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 5

Gene SMARCD3, Length 2,415 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-205ENST00000469154 RBSNQ9H1K0 784 aa17.2■□□□□ 0.34
SMARCD3-205ENST00000469154 LRSAM1Q6UWE0 723 aa17.2■□□□□ 0.34
SMARCD3-205ENST00000469154 RBM27Q9P2N5 1060 aaKnown RBP17.19■□□□□ 0.34
SMARCD3-205ENST00000469154 PRIM1P49642 420 aaKnown RBP17.19■□□□□ 0.34
SMARCD3-205ENST00000469154 POLA2Q14181 598 aa17.19■□□□□ 0.34
SMARCD3-205ENST00000469154 PDLIM2Q96JY6 352 aa17.19■□□□□ 0.34
SMARCD3-205ENST00000469154 CHMP4AQ9BY43 222 aa17.19■□□□□ 0.34
SMARCD3-205ENST00000469154 LRP6O75581 1613 aa17.19■□□□□ 0.34
SMARCD3-205ENST00000469154 MSNP26038 577 aaKnown RBP17.18■□□□□ 0.34
SMARCD3-205ENST00000469154 TMEM63CQ9P1W3 806 aa17.18■□□□□ 0.34
SMARCD3-205ENST00000469154 PLCH1Q4KWH8 1693 aa17.18■□□□□ 0.34
SMARCD3-205ENST00000469154 UNC5CLQ8IV45 518 aa17.18■□□□□ 0.34
SMARCD3-205ENST00000469154 CEMIPQ8WUJ3 1361 aa17.18■□□□□ 0.34
SMARCD3-205ENST00000469154 HOXB7P09629 217 aa17.17■□□□□ 0.34
SMARCD3-205ENST00000469154 HSPA4P34932 840 aa17.17■□□□□ 0.34
SMARCD3-205ENST00000469154 C1orf141Q5JVX7 400 aa17.17■□□□□ 0.34
SMARCD3-205ENST00000469154 IL2RBP14784 551 aa17.17■□□□□ 0.34
SMARCD3-205ENST00000469154 SPG7Q9UQ90 795 aa17.17■□□□□ 0.34
SMARCD3-205ENST00000469154 SLIT2O94813 1529 aa17.16■□□□□ 0.34
SMARCD3-205ENST00000469154 TPM2P07951 284 aa17.16■□□□□ 0.34
SMARCD3-205ENST00000469154 AKAP4Q5JQC9 854 aa17.16■□□□□ 0.34
SMARCD3-205ENST00000469154 MEX3CQ5U5Q3 659 aaKnown RBP17.16■□□□□ 0.34
SMARCD3-205ENST00000469154 FOXD4L5Q5VV16 416 aaPredicted RBP17.16■□□□□ 0.34
SMARCD3-205ENST00000469154 PPP1R42Q7Z4L9 355 aa17.16■□□□□ 0.34
SMARCD3-205ENST00000469154 FOXD4L4Q8WXT5 416 aaPredicted RBP17.16■□□□□ 0.34
SMARCD3-205ENST00000469154 IL1RAPL2Q9NP60 686 aa17.16■□□□□ 0.34
SMARCD3-205ENST00000469154 SURF6O75683 361 aaKnown RBP17.16■□□□□ 0.34
SMARCD3-205ENST00000469154 SYAP1Q96A49 352 aaPredicted RBP17.16■□□□□ 0.34
SMARCD3-205ENST00000469154 KIF1BPQ96EK5 621 aa17.16■□□□□ 0.34
SMARCD3-205ENST00000469154 MPRIPQ6WCQ1 1025 aa17.15■□□□□ 0.34
SMARCD3-205ENST00000469154 NUTM1Q86Y26 1132 aa17.15■□□□□ 0.34
SMARCD3-205ENST00000469154 RHPN1Q8TCX5 695 aa17.15■□□□□ 0.34
SMARCD3-205ENST00000469154 PHAXQ9H814 394 aaKnown RBP17.15■□□□□ 0.34
SMARCD3-205ENST00000469154 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP17.15■□□□□ 0.34
SMARCD3-205ENST00000469154 CCDC9Q9Y3X0 531 aaKnown RBP17.15■□□□□ 0.34
SMARCD3-205ENST00000469154 RAD50Q92878 1312 aa17.15■□□□□ 0.34
SMARCD3-205ENST00000469154 WDR33Q9C0J8 1336 aaKnown RBP17.15■□□□□ 0.34
SMARCD3-205ENST00000469154 SYCE3A1L190 88 aa17.15■□□□□ 0.34
SMARCD3-205ENST00000469154 NOL8Q76FK4 1167 aaKnown RBP17.15■□□□□ 0.34
SMARCD3-205ENST00000469154 LGR6Q9HBX8 967 aa17.15■□□□□ 0.34
SMARCD3-205ENST00000469154 OVOS2A0A0G2JMS6 1433 aa17.14■□□□□ 0.33
SMARCD3-205ENST00000469154 HSP90AB4PQ58FF6 505 aa17.14■□□□□ 0.33
SMARCD3-205ENST00000469154 PI4K2BQ8TCG2 481 aa17.14■□□□□ 0.33
SMARCD3-205ENST00000469154 NSFL1CQ9UNZ2 370 aaKnown RBP17.14■□□□□ 0.33
SMARCD3-205ENST00000469154 CNTROBQ8N137 903 aa17.13■□□□□ 0.33
SMARCD3-205ENST00000469154 CHAMP1Q96JM3 812 aa17.13■□□□□ 0.33
SMARCD3-205ENST00000469154 UPF3BQ9BZI7 483 aaKnown RBP17.13■□□□□ 0.33
SMARCD3-205ENST00000469154 SGSM2O43147 1006 aa17.13■□□□□ 0.33
SMARCD3-205ENST00000469154 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.13■□□□□ 0.33
SMARCD3-205ENST00000469154 FNBP4Q8N3X1 1017 aaPredicted RBP17.13■□□□□ 0.33
SMARCD3-205ENST00000469154 ZCRB1Q8TBF4 217 aaKnown RBP17.13■□□□□ 0.33
SMARCD3-205ENST00000469154 UBE2Q2Q8WVN8 375 aa17.13■□□□□ 0.33
SMARCD3-205ENST00000469154 CYP27B1O15528 508 aa17.12■□□□□ 0.33
SMARCD3-205ENST00000469154 SRGAP3O43295 1099 aa17.12■□□□□ 0.33
SMARCD3-205ENST00000469154 OFD1O75665 1012 aa17.12■□□□□ 0.33
SMARCD3-205ENST00000469154 EIF4A1P60842 406 aaKnown RBP17.12■□□□□ 0.33
SMARCD3-205ENST00000469154 NOL7Q9UMY1 257 aaKnown RBP17.12■□□□□ 0.33
SMARCD3-205ENST00000469154 SPATA31A1Q5TZJ5 1347 aa17.12■□□□□ 0.33
SMARCD3-205ENST00000469154 USP42Q9H9J4 1324 aaKnown RBP17.12■□□□□ 0.33
SMARCD3-205ENST00000469154 BCL9LQ86UU0 1499 aa17.12■□□□□ 0.33
SMARCD3-205ENST00000469154 PHKG2P15735 406 aa17.12■□□□□ 0.33
SMARCD3-205ENST00000469154 DNAAF4Q8WXU2 420 aa17.12■□□□□ 0.33
SMARCD3-205ENST00000469154 NRAPQ86VF7 1730 aa17.12■□□□□ 0.33
SMARCD3-205ENST00000469154 PHF14O94880 888 aa17.11■□□□□ 0.33
SMARCD3-205ENST00000469154 IFNL2Q8IZJ0 200 aa17.11■□□□□ 0.33
SMARCD3-205ENST00000469154 IL25Q9H293 177 aa17.11■□□□□ 0.33
SMARCD3-205ENST00000469154 USP21Q9UK80 565 aa17.11■□□□□ 0.33
SMARCD3-205ENST00000469154 NWD2Q9ULI1 1742 aa17.11■□□□□ 0.33
SMARCD3-205ENST00000469154 BEND3Q5T5X7 828 aa17.11■□□□□ 0.33
SMARCD3-205ENST00000469154 SPATA31A5Q5VU36 1347 aa17.11■□□□□ 0.33
SMARCD3-205ENST00000469154 SPATA31A7Q8IWB4 1347 aa17.11■□□□□ 0.33
SMARCD3-205ENST00000469154 TCHHQ07283 1943 aa17.11■□□□□ 0.33
SMARCD3-205ENST00000469154 DDX54Q8TDD1 881 aaKnown RBP17.1■□□□□ 0.33
SMARCD3-205ENST00000469154 TSPY26PQ9H489 355 aa17.1■□□□□ 0.33
SMARCD3-205ENST00000469154 TTC41PQ6P2S7 1318 aa17.1■□□□□ 0.33
SMARCD3-205ENST00000469154 RNMTO43148 476 aaKnown RBP17.1■□□□□ 0.33
SMARCD3-205ENST00000469154 RRP9O43818 475 aaKnown RBP17.1■□□□□ 0.33
SMARCD3-205ENST00000469154 EIF2S2P20042 333 aaKnown RBP17.1■□□□□ 0.33
SMARCD3-205ENST00000469154 LSG1Q9H089 658 aaKnown RBP17.1■□□□□ 0.33
SMARCD3-205ENST00000469154 SNX14Q9Y5W7 946 aa17.1■□□□□ 0.33
SMARCD3-205ENST00000469154 PLEKHG2Q9H7P9 1386 aa17.1■□□□□ 0.33
SMARCD3-205ENST00000469154 RPAP1Q9BWH6 1393 aaPredicted RBP17.09■□□□□ 0.33
SMARCD3-205ENST00000469154 ZNF500O60304 480 aaPredicted RBP17.09■□□□□ 0.33
SMARCD3-205ENST00000469154 MCM5P33992 734 aa17.09■□□□□ 0.33
SMARCD3-205ENST00000469154 CHPF2Q9P2E5 772 aa17.09■□□□□ 0.33
SMARCD3-205ENST00000469154 CCDC39Q9UFE4 941 aa17.09■□□□□ 0.33
SMARCD3-205ENST00000469154 PARP4Q9UKK3 1724 aaKnown RBP17.09■□□□□ 0.33
SMARCD3-205ENST00000469154 PCDH11XQ9BZA7 1347 aa17.09■□□□□ 0.33
SMARCD3-205ENST00000469154 PCDH11YQ9BZA8 1340 aa17.09■□□□□ 0.33
SMARCD3-205ENST00000469154 MAP4K4O95819 1239 aaPredicted RBP17.09■□□□□ 0.33
SMARCD3-205ENST00000469154 TEFQ10587 303 aa17.09■□□□□ 0.33
SMARCD3-205ENST00000469154 KIAA1211Q6ZU35 1233 aa17.09■□□□□ 0.33
SMARCD3-205ENST00000469154 TMEM87AQ8NBN3 555 aa17.09■□□□□ 0.33
SMARCD3-205ENST00000469154 NBPF7P0C2Y1 421 aaPredicted RBP17.08■□□□□ 0.33
SMARCD3-205ENST00000469154 TERF1P54274 439 aa17.08■□□□□ 0.33
SMARCD3-205ENST00000469154 TTC14Q96N46 770 aa17.08■□□□□ 0.33
SMARCD3-205ENST00000469154 PKD1L3Q7Z443 1732 aa17.08■□□□□ 0.32
SMARCD3-205ENST00000469154 GLRX3O76003 335 aaKnown RBP17.08■□□□□ 0.32
SMARCD3-205ENST00000469154 VPS72Q15906 364 aa17.08■□□□□ 0.32
SMARCD3-205ENST00000469154 DISP2A7MBM2 1401 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms