RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 PDZRN3Q9UPQ7 1066 aa22.78■■□□□ 1.24
CPSF4-209ENST00000465132 NFKBIEO00221 500 aa22.77■■□□□ 1.24
CPSF4-209ENST00000465132 CAMTA2O94983 1202 aa22.77■■□□□ 1.24
CPSF4-209ENST00000465132 PDE6BP35913 854 aa22.77■■□□□ 1.24
CPSF4-209ENST00000465132 NPM2Q86SE8 214 aaKnown RBP22.77■■□□□ 1.24
CPSF4-209ENST00000465132 APAF1O14727 1248 aa22.76■■□□□ 1.23
CPSF4-209ENST00000465132 ZNF622Q969S3 477 aaKnown RBP eCLIP22.76■■□□□ 1.23
CPSF4-209ENST00000465132 TNRC6CQ9HCJ0 1690 aaKnown RBP22.76■■□□□ 1.23
CPSF4-209ENST00000465132 DLG5Q8TDM6 1919 aa22.76■■□□□ 1.23
CPSF4-209ENST00000465132 GLTPD2A6NH11 291 aa22.75■■□□□ 1.23
CPSF4-209ENST00000465132 CCDC24Q8N4L8 307 aa22.75■■□□□ 1.23
CPSF4-209ENST00000465132 SETDB2Q96T68 719 aa22.75■■□□□ 1.23
CPSF4-209ENST00000465132 USP16Q9Y5T5 823 aa22.75■■□□□ 1.23
CPSF4-209ENST00000465132 ANKRD31Q8N7Z5 1873 aa22.74■■□□□ 1.23
CPSF4-209ENST00000465132 WDR90Q96KV7 1748 aa22.74■■□□□ 1.23
CPSF4-209ENST00000465132 NEUROD2Q15784 382 aa22.73■■□□□ 1.23
CPSF4-209ENST00000465132 CCDC27Q2M243 656 aa22.73■■□□□ 1.23
CPSF4-209ENST00000465132 MCM10Q7L590 875 aa22.73■■□□□ 1.23
CPSF4-209ENST00000465132 DZIP3Q86Y13 1208 aaKnown RBP22.73■■□□□ 1.23
CPSF4-209ENST00000465132 CNBD1Q8NA66 436 aa22.73■■□□□ 1.23
CPSF4-209ENST00000465132 PRAMEF22A3QJZ6 481 aa22.72■■□□□ 1.23
CPSF4-209ENST00000465132 C21orf2O43822 256 aa22.72■■□□□ 1.23
CPSF4-209ENST00000465132 HTRA3P83110 453 aa22.72■■□□□ 1.23
CPSF4-209ENST00000465132 SMC1BQ8NDV3 1235 aa22.72■■□□□ 1.23
CPSF4-209ENST00000465132 SNRPA1P09661 255 aaKnown RBP22.71■■□□□ 1.23
CPSF4-209ENST00000465132 VEGFAP15692 232 aaPredicted RBP22.71■■□□□ 1.23
CPSF4-209ENST00000465132 PIP4K2AP48426 406 aaPredicted RBP22.71■■□□□ 1.23
CPSF4-209ENST00000465132 ZNF219Q9P2Y4 722 aaPredicted RBP22.71■■□□□ 1.23
CPSF4-209ENST00000465132 NPHP1O15259 732 aa22.7■■□□□ 1.22
CPSF4-209ENST00000465132 ST5P78524 1137 aa22.7■■□□□ 1.22
CPSF4-209ENST00000465132 COL11A2P13942 1736 aaPredicted RBP22.7■■□□□ 1.22
CPSF4-209ENST00000465132 DCTN1Q14203 1278 aa22.69■■□□□ 1.22
CPSF4-209ENST00000465132 STYK1Q6J9G0 422 aa22.69■■□□□ 1.22
CPSF4-209ENST00000465132 CLEC4GQ6UXB4 293 aa22.69■■□□□ 1.22
CPSF4-209ENST00000465132 CNKSR1Q969H4 720 aa22.69■■□□□ 1.22
CPSF4-209ENST00000465132 KLRG1Q96E93 195 aa22.69■■□□□ 1.22
CPSF4-209ENST00000465132 TIAM2Q8IVF5 1701 aa22.68■■□□□ 1.22
CPSF4-209ENST00000465132 SRGNP10124 158 aa22.68■■□□□ 1.22
CPSF4-209ENST00000465132 RRP7AQ9Y3A4 280 aaKnown RBP22.68■■□□□ 1.22
CPSF4-209ENST00000465132 BCORQ6W2J9 1755 aa22.68■■□□□ 1.22
CPSF4-209ENST00000465132 LTBP3Q9NS15 1303 aa22.66■■□□□ 1.22
CPSF4-209ENST00000465132 NBPF26B4DH59 902 aa22.66■■□□□ 1.22
CPSF4-209ENST00000465132 ERFEQ4G0M1 354 aa22.66■■□□□ 1.22
CPSF4-209ENST00000465132 DPY19L2Q6NUT2 758 aa22.66■■□□□ 1.22
CPSF4-209ENST00000465132 NBPF10Q6P3W6 841 aaKnown RBP22.66■■□□□ 1.22
CPSF4-209ENST00000465132 NBPF5PQ86XG9 351 aaPredicted RBP22.66■■□□□ 1.22
CPSF4-209ENST00000465132 NBPF15Q8N660 670 aa22.66■■□□□ 1.22
CPSF4-209ENST00000465132 JMYQ8N9B5 988 aa22.66■■□□□ 1.22
CPSF4-209ENST00000465132 MASTLQ96GX5 879 aa22.66■■□□□ 1.22
CPSF4-209ENST00000465132 BABAM1Q9NWV8 329 aa22.66■■□□□ 1.22
CPSF4-209ENST00000465132 ZNF652Q9Y2D9 606 aa22.66■■□□□ 1.22
CPSF4-209ENST00000465132 POTECB2RU33 542 aa22.65■■□□□ 1.22
CPSF4-209ENST00000465132 PRPF40BQ6NWY9 871 aaKnown RBP22.65■■□□□ 1.22
CPSF4-209ENST00000465132 TAOK3Q9H2K8 898 aa22.65■■□□□ 1.22
CPSF4-209ENST00000465132 CCDC88AQ3V6T2 1871 aa22.64■■□□□ 1.22
CPSF4-209ENST00000465132 TAF7Q15545 349 aaPredicted RBP22.64■■□□□ 1.21
CPSF4-209ENST00000465132 WDR63Q8IWG1 891 aa22.64■■□□□ 1.21
CPSF4-209ENST00000465132 FER1L6Q2WGJ9 1857 aa22.64■■□□□ 1.21
CPSF4-209ENST00000465132 RGL2O15211 777 aa22.63■■□□□ 1.21
CPSF4-209ENST00000465132 HNRNPUQ00839 825 aaKnown RBP eCLIP22.63■■□□□ 1.21
CPSF4-209ENST00000465132 SOGA3Q5TF21 947 aa22.63■■□□□ 1.21
CPSF4-209ENST00000465132 TRIM35Q9UPQ4 493 aa22.63■■□□□ 1.21
CPSF4-209ENST00000465132 IL16Q14005 1332 aa22.62■■□□□ 1.21
CPSF4-209ENST00000465132 SLX4Q8IY92 1834 aa22.62■■□□□ 1.21
CPSF4-209ENST00000465132 WWC1Q8IX03 1113 aa22.62■■□□□ 1.21
CPSF4-209ENST00000465132 GNAI1P63096 354 aa22.61■■□□□ 1.21
CPSF4-209ENST00000465132 MIS18AQ9NYP9 233 aa22.61■■□□□ 1.21
CPSF4-209ENST00000465132 NIP7Q9Y221 180 aaKnown RBP eCLIP22.61■■□□□ 1.21
CPSF4-209ENST00000465132 KLRG2A4D1S0 409 aaPredicted RBP22.6■■□□□ 1.21
CPSF4-209ENST00000465132 TPTE2Q6XPS3 522 aa22.6■■□□□ 1.21
CPSF4-209ENST00000465132 C7orf43Q8WVR3 580 aa22.6■■□□□ 1.21
CPSF4-209ENST00000465132 NPR1P16066 1061 aa22.59■■□□□ 1.21
CPSF4-209ENST00000465132 DICER1Q9UPY3 1922 aaKnown RBP22.59■■□□□ 1.21
CPSF4-209ENST00000465132 CFAP44Q96MT7 982 aa22.58■■□□□ 1.21
CPSF4-209ENST00000465132 IFT57Q9NWB7 429 aa22.58■■□□□ 1.21
CPSF4-209ENST00000465132 SALL2Q9Y467 1007 aaPredicted RBP22.58■■□□□ 1.21
CPSF4-209ENST00000465132 ARFGEF2Q9Y6D5 1785 aa22.58■■□□□ 1.2
CPSF4-209ENST00000465132 HLFQ16534 295 aa22.57■■□□□ 1.2
CPSF4-209ENST00000465132 MYH16Q9H6N6 1097 aa22.57■■□□□ 1.2
CPSF4-209ENST00000465132 FAM177BA6PVY3 158 aa22.56■■□□□ 1.2
CPSF4-209ENST00000465132 DDNO94850 711 aaPredicted RBP22.56■■□□□ 1.2
CPSF4-209ENST00000465132 GOLGA2Q08379 1002 aa22.56■■□□□ 1.2
CPSF4-209ENST00000465132 CCDC93Q567U6 631 aa22.56■■□□□ 1.2
CPSF4-209ENST00000465132 CHMP4AQ9BY43 222 aa22.56■■□□□ 1.2
CPSF4-209ENST00000465132 TSPYL4Q9UJ04 414 aa22.55■■□□□ 1.2
CPSF4-209ENST00000465132 CACNA1SQ13698 1873 aa22.55■■□□□ 1.2
CPSF4-209ENST00000465132 THUMPD2Q9BTF0 503 aaKnown RBP22.54■■□□□ 1.2
CPSF4-209ENST00000465132 LAS1LQ9Y4W2 734 aaKnown RBP22.54■■□□□ 1.2
CPSF4-209ENST00000465132 ZBED9Q6R2W3 1325 aa22.54■■□□□ 1.2
CPSF4-209ENST00000465132 LAMB4A4D0S4 1761 aa22.53■■□□□ 1.2
CPSF4-209ENST00000465132 ERVV-1B6SEH8 477 aa22.52■■□□□ 1.2
CPSF4-209ENST00000465132 E9PSI1 815 aa22.52■■□□□ 1.2
CPSF4-209ENST00000465132 CHL1O00533 1208 aa22.52■■□□□ 1.2
CPSF4-209ENST00000465132 GTF2E1P29083 439 aaPredicted RBP22.52■■□□□ 1.2
CPSF4-209ENST00000465132 EIF4A1P60842 406 aaKnown RBP22.52■■□□□ 1.2
CPSF4-209ENST00000465132 FKBP4Q02790 459 aaKnown RBP eCLIP22.52■■□□□ 1.2
CPSF4-209ENST00000465132 CHADLQ6NUI6 762 aa22.52■■□□□ 1.2
CPSF4-209ENST00000465132 KDM3BQ7LBC6 1761 aa22.51■■□□□ 1.19
CPSF4-209ENST00000465132 POTEIP0CG38 1075 aa22.51■■□□□ 1.19
CPSF4-209ENST00000465132 POTEJP0CG39 1038 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms