RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 ST5P78524 1137 aa30.2■■■□□ 2.43
USP4-208ENST00000464168 DCTN1Q14203 1278 aa30.2■■■□□ 2.43
USP4-208ENST00000464168 STYK1Q6J9G0 422 aa30.2■■■□□ 2.43
USP4-208ENST00000464168 CLEC4GQ6UXB4 293 aa30.2■■■□□ 2.43
USP4-208ENST00000464168 CNKSR1Q969H4 720 aa30.2■■■□□ 2.43
USP4-208ENST00000464168 COL11A2P13942 1736 aaPredicted RBP30.19■■■□□ 2.42
USP4-208ENST00000464168 CCDC88AQ3V6T2 1871 aa30.19■■■□□ 2.42
USP4-208ENST00000464168 ERFEQ4G0M1 354 aa30.18■■■□□ 2.42
USP4-208ENST00000464168 DPY19L2Q6NUT2 758 aa30.18■■■□□ 2.42
USP4-208ENST00000464168 LTBP3Q9NS15 1303 aa30.18■■■□□ 2.42
USP4-208ENST00000464168 TIAM2Q8IVF5 1701 aa30.17■■■□□ 2.42
USP4-208ENST00000464168 HTATSF1O43719 755 aaKnown RBP30.17■■■□□ 2.42
USP4-208ENST00000464168 PRPF40BQ6NWY9 871 aaKnown RBP30.17■■■□□ 2.42
USP4-208ENST00000464168 MASTLQ96GX5 879 aa30.17■■■□□ 2.42
USP4-208ENST00000464168 NBPF26B4DH59 902 aa30.16■■■□□ 2.42
USP4-208ENST00000464168 NBPF10Q6P3W6 841 aaKnown RBP30.16■■■□□ 2.42
USP4-208ENST00000464168 NBPF15Q8N660 670 aa30.16■■■□□ 2.42
USP4-208ENST00000464168 NBPF5PQ86XG9 351 aaPredicted RBP30.15■■■□□ 2.42
USP4-208ENST00000464168 TAOK3Q9H2K8 898 aa30.15■■■□□ 2.42
USP4-208ENST00000464168 FER1L6Q2WGJ9 1857 aa30.14■■■□□ 2.42
USP4-208ENST00000464168 BCORQ6W2J9 1755 aa30.14■■■□□ 2.42
USP4-208ENST00000464168 ZNF652Q9Y2D9 606 aa30.14■■■□□ 2.42
USP4-208ENST00000464168 TAF7Q15545 349 aaPredicted RBP30.13■■■□□ 2.41
USP4-208ENST00000464168 SLX4Q8IY92 1834 aa30.12■■■□□ 2.41
USP4-208ENST00000464168 C7orf43Q8WVR3 580 aa30.12■■■□□ 2.41
USP4-208ENST00000464168 RGL2O15211 777 aa30.11■■■□□ 2.41
USP4-208ENST00000464168 SOGA3Q5TF21 947 aa30.11■■■□□ 2.41
USP4-208ENST00000464168 MIS18AQ9NYP9 233 aa30.11■■■□□ 2.41
USP4-208ENST00000464168 KLRG2A4D1S0 409 aaPredicted RBP30.1■■■□□ 2.41
USP4-208ENST00000464168 NIP7Q9Y221 180 aaKnown RBP eCLIP30.1■■■□□ 2.41
USP4-208ENST00000464168 TPTE2Q6XPS3 522 aa30.09■■■□□ 2.41
USP4-208ENST00000464168 DICER1Q9UPY3 1922 aaKnown RBP30.08■■■□□ 2.41
USP4-208ENST00000464168 NPR1P16066 1061 aa30.08■■■□□ 2.41
USP4-208ENST00000464168 DDNO94850 711 aaPredicted RBP30.07■■■□□ 2.4
USP4-208ENST00000464168 HLFQ16534 295 aa30.06■■■□□ 2.4
USP4-208ENST00000464168 FAM177BA6PVY3 158 aa30.04■■■□□ 2.4
USP4-208ENST00000464168 CCDC93Q567U6 631 aa30.04■■■□□ 2.4
USP4-208ENST00000464168 COL13A1Q5TAT6 717 aaPredicted RBP30.04■■■□□ 2.4
USP4-208ENST00000464168 ARFGEF2Q9Y6D5 1785 aa30.02■■■□□ 2.4
USP4-208ENST00000464168 POTEIP0CG38 1075 aa30.01■■■□□ 2.39
USP4-208ENST00000464168 POTEJP0CG39 1038 aa30.01■■■□□ 2.39
USP4-208ENST00000464168 CHADLQ6NUI6 762 aa30.01■■■□□ 2.39
USP4-208ENST00000464168 OLFM4Q6UX06 510 aa30.01■■■□□ 2.39
USP4-208ENST00000464168 PLEKHF1Q96S99 279 aa30.01■■■□□ 2.39
USP4-208ENST00000464168 CACNA1SQ13698 1873 aa30.01■■■□□ 2.39
USP4-208ENST00000464168 FKBP4Q02790 459 aaKnown RBP eCLIP30■■■□□ 2.39
USP4-208ENST00000464168 PNISRQ8TF01 805 aaKnown RBP30■■■□□ 2.39
USP4-208ENST00000464168 NEFMP07197 916 aa29.99■■■□□ 2.39
USP4-208ENST00000464168 NGEFQ8N5V2 710 aa29.99■■■□□ 2.39
USP4-208ENST00000464168 EIF4A1P60842 406 aaKnown RBP29.98■■■□□ 2.39
USP4-208ENST00000464168 L3MBTL3Q96JM7 780 aaPredicted RBP29.98■■■□□ 2.39
USP4-208ENST00000464168 ZNF277Q9NRM2 450 aaPredicted RBP29.98■■■□□ 2.39
USP4-208ENST00000464168 ERVV-1B6SEH8 477 aa29.97■■■□□ 2.39
USP4-208ENST00000464168 RTKN2Q8IZC4 609 aa29.97■■■□□ 2.39
USP4-208ENST00000464168 THUMPD2Q9BTF0 503 aaKnown RBP29.97■■■□□ 2.39
USP4-208ENST00000464168 GTF2E1P29083 439 aaPredicted RBP29.96■■■□□ 2.39
USP4-208ENST00000464168 ALDH1B1P30837 517 aa29.96■■■□□ 2.39
USP4-208ENST00000464168 NFE2L2Q16236 605 aa29.96■■■□□ 2.39
USP4-208ENST00000464168 IQCA1LA6NCM1 817 aa29.95■■■□□ 2.39
USP4-208ENST00000464168 RRP7AQ9Y3A4 280 aaKnown RBP29.95■■■□□ 2.39
USP4-208ENST00000464168 TTLL7Q6ZT98 887 aa29.94■■■□□ 2.38
USP4-208ENST00000464168 TAF1DQ9H5J8 278 aaPredicted RBP29.94■■■□□ 2.38
USP4-208ENST00000464168 MAP3K15Q6ZN16 1313 aa29.94■■■□□ 2.38
USP4-208ENST00000464168 CRY2Q49AN0 593 aa29.93■■■□□ 2.38
USP4-208ENST00000464168 NUTM1Q86Y26 1132 aa29.93■■■□□ 2.38
USP4-208ENST00000464168 NYXQ9GZU5 481 aa29.93■■■□□ 2.38
USP4-208ENST00000464168 CREBZFQ9NS37 354 aa29.93■■■□□ 2.38
USP4-208ENST00000464168 ZNF541Q9H0D2 1346 aa29.93■■■□□ 2.38
USP4-208ENST00000464168 ABCC12Q96J65 1359 aa29.92■■■□□ 2.38
USP4-208ENST00000464168 HSPA1AP0DMV8 641 aaKnown RBP29.92■■■□□ 2.38
USP4-208ENST00000464168 HSPA1BP0DMV9 641 aaKnown RBP29.92■■■□□ 2.38
USP4-208ENST00000464168 LAMB4A4D0S4 1761 aa29.91■■■□□ 2.38
USP4-208ENST00000464168 KDM3BQ7LBC6 1761 aa29.91■■■□□ 2.38
USP4-208ENST00000464168 LDHDQ86WU2 507 aa29.91■■■□□ 2.38
USP4-208ENST00000464168 SYNE4Q8N205 404 aa29.91■■■□□ 2.38
USP4-208ENST00000464168 DLG5Q8TDM6 1919 aa29.9■■■□□ 2.38
USP4-208ENST00000464168 MYL6BP14649 208 aa29.9■■■□□ 2.38
USP4-208ENST00000464168 KIF6Q6ZMV9 814 aa29.9■■■□□ 2.38
USP4-208ENST00000464168 IARSP41252 1262 aaKnown RBP29.89■■■□□ 2.38
USP4-208ENST00000464168 FZD9O00144 591 aa29.88■■■□□ 2.37
USP4-208ENST00000464168 GPTP24298 496 aa29.88■■■□□ 2.37
USP4-208ENST00000464168 ZBTB3Q9H5J0 574 aa29.88■■■□□ 2.37
USP4-208ENST00000464168 UBN2Q6ZU65 1347 aa29.88■■■□□ 2.37
USP4-208ENST00000464168 PASKQ96RG2 1323 aa29.88■■■□□ 2.37
USP4-208ENST00000464168 SNED1Q8TER0 1413 aa29.88■■■□□ 2.37
USP4-208ENST00000464168 PNNQ9H307 717 aaKnown RBP29.87■■■□□ 2.37
USP4-208ENST00000464168 MKRN1Q9UHC7 482 aaKnown RBP29.87■■■□□ 2.37
USP4-208ENST00000464168 HOXA10P31260 410 aaPredicted RBP29.86■■■□□ 2.37
USP4-208ENST00000464168 SUSD4Q5VX71 490 aa29.86■■■□□ 2.37
USP4-208ENST00000464168 ZNF34Q8IZ26 560 aa29.86■■■□□ 2.37
USP4-208ENST00000464168 TNS4Q8IZW8 715 aa29.86■■■□□ 2.37
USP4-208ENST00000464168 PSMD1Q99460 953 aa29.86■■■□□ 2.37
USP4-208ENST00000464168 HACL1Q9UJ83 578 aa29.86■■■□□ 2.37
USP4-208ENST00000464168 MAPK8IP3Q9UPT6 1336 aa29.86■■■□□ 2.37
USP4-208ENST00000464168 SCN4AP35499 1836 aa29.85■■■□□ 2.37
USP4-208ENST00000464168 ITGBL1O95965 494 aaPredicted RBP29.84■■■□□ 2.37
USP4-208ENST00000464168 EAPPQ56P03 285 aaPredicted RBP29.84■■■□□ 2.37
USP4-208ENST00000464168 CC2D2BQ6DHV5 1058 aa29.84■■■□□ 2.37
USP4-208ENST00000464168 IBTKQ9P2D0 1353 aaPredicted RBP29.84■■■□□ 2.37
USP4-208ENST00000464168 NUP98P52948 1817 aa29.84■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms