RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 PASKQ96RG2 1323 aa19.51■□□□□ 0.71
SMC1A-204ENST00000463684 TMEM88BA6NKF7 163 aa19.5■□□□□ 0.71
SMC1A-204ENST00000463684 U2SURPO15042 1029 aaKnown RBP19.5■□□□□ 0.71
SMC1A-204ENST00000463684 CTCFP49711 727 aaPredicted RBP19.5■□□□□ 0.71
SMC1A-204ENST00000463684 CCDC93Q567U6 631 aa19.5■□□□□ 0.71
SMC1A-204ENST00000463684 L3MBTL3Q96JM7 780 aaPredicted RBP19.5■□□□□ 0.71
SMC1A-204ENST00000463684 UBR2Q8IWV8 1755 aa19.49■□□□□ 0.71
SMC1A-204ENST00000463684 EAPPQ56P03 285 aaPredicted RBP19.49■□□□□ 0.71
SMC1A-204ENST00000463684 CC2D1BQ5T0F9 858 aaKnown RBP19.49■□□□□ 0.71
SMC1A-204ENST00000463684 NBPF5PQ86XG9 351 aaPredicted RBP19.49■□□□□ 0.71
SMC1A-204ENST00000463684 CLEC11AQ9Y240 323 aa19.49■□□□□ 0.71
SMC1A-204ENST00000463684 FER1L6Q2WGJ9 1857 aa19.49■□□□□ 0.71
SMC1A-204ENST00000463684 ANKRD31Q8N7Z5 1873 aa19.49■□□□□ 0.71
SMC1A-204ENST00000463684 VEGFBP49765 207 aa19.48■□□□□ 0.71
SMC1A-204ENST00000463684 CLEC4GQ6UXB4 293 aa19.48■□□□□ 0.71
SMC1A-204ENST00000463684 DICER1Q9UPY3 1922 aaKnown RBP19.47■□□□□ 0.71
SMC1A-204ENST00000463684 BTBD11A6QL63 1104 aa19.47■□□□□ 0.71
SMC1A-204ENST00000463684 NPR1P16066 1061 aa19.47■□□□□ 0.71
SMC1A-204ENST00000463684 FKBP4Q02790 459 aaKnown RBP eCLIP19.47■□□□□ 0.71
SMC1A-204ENST00000463684 C7orf43Q8WVR3 580 aa19.47■□□□□ 0.71
SMC1A-204ENST00000463684 HACL1Q9UJ83 578 aa19.47■□□□□ 0.71
SMC1A-204ENST00000463684 ZNF652Q9Y2D9 606 aa19.47■□□□□ 0.71
SMC1A-204ENST00000463684 ITGBL1O95965 494 aaPredicted RBP19.46■□□□□ 0.71
SMC1A-204ENST00000463684 SCN7AQ01118 1682 aa19.46■□□□□ 0.71
SMC1A-204ENST00000463684 COL11A2P13942 1736 aaPredicted RBP19.45■□□□□ 0.7
SMC1A-204ENST00000463684 TPTE2Q6XPS3 522 aa19.45■□□□□ 0.7
SMC1A-204ENST00000463684 PNMA8AQ86V59 439 aaPredicted RBP19.45■□□□□ 0.7
SMC1A-204ENST00000463684 RTKN2Q8IZC4 609 aa19.45■□□□□ 0.7
SMC1A-204ENST00000463684 ZNF277Q9NRM2 450 aaPredicted RBP19.45■□□□□ 0.7
SMC1A-204ENST00000463684 USP16Q9Y5T5 823 aa19.45■□□□□ 0.7
SMC1A-204ENST00000463684 VIRMAQ69YN4 1812 aaKnown RBP19.44■□□□□ 0.7
SMC1A-204ENST00000463684 SLX4Q8IY92 1834 aa19.44■□□□□ 0.7
SMC1A-204ENST00000463684 EPHX2P34913 555 aa19.44■□□□□ 0.7
SMC1A-204ENST00000463684 WBP1LQ9NX94 342 aa19.44■□□□□ 0.7
SMC1A-204ENST00000463684 PER1O15534 1290 aaPredicted RBP19.43■□□□□ 0.7
SMC1A-204ENST00000463684 KCNQ3O43525 872 aa19.43■□□□□ 0.7
SMC1A-204ENST00000463684 PIP4K2AP48426 406 aaPredicted RBP19.43■□□□□ 0.7
SMC1A-204ENST00000463684 LBX1P52954 281 aa19.43■□□□□ 0.7
SMC1A-204ENST00000463684 DEFB115Q30KQ5 88 aa19.43■□□□□ 0.7
SMC1A-204ENST00000463684 KIF7Q2M1P5 1343 aa19.43■□□□□ 0.7
SMC1A-204ENST00000463684 ZNF541Q9H0D2 1346 aa19.43■□□□□ 0.7
SMC1A-204ENST00000463684 KLRG2A4D1S0 409 aaPredicted RBP19.42■□□□□ 0.7
SMC1A-204ENST00000463684 ALDH1B1P30837 517 aa19.42■□□□□ 0.7
SMC1A-204ENST00000463684 CNTROBQ8N137 903 aa19.42■□□□□ 0.7
SMC1A-204ENST00000463684 CEMIPQ8WUJ3 1361 aa19.42■□□□□ 0.7
SMC1A-204ENST00000463684 SNRPA1P09661 255 aaKnown RBP19.41■□□□□ 0.7
SMC1A-204ENST00000463684 CNGB1Q14028 1251 aaPredicted RBP19.41■□□□□ 0.7
SMC1A-204ENST00000463684 NIP7Q9Y221 180 aaKnown RBP eCLIP19.41■□□□□ 0.7
SMC1A-204ENST00000463684 SCN4AP35499 1836 aa19.4■□□□□ 0.7
SMC1A-204ENST00000463684 RASSF10A6NK89 507 aa19.4■□□□□ 0.7
SMC1A-204ENST00000463684 FAM177BA6PVY3 158 aa19.4■□□□□ 0.7
SMC1A-204ENST00000463684 GTF2E1P29083 439 aaPredicted RBP19.4■□□□□ 0.7
SMC1A-204ENST00000463684 IARSP41252 1262 aaKnown RBP19.4■□□□□ 0.7
SMC1A-204ENST00000463684 MAP2K1Q02750 393 aaPredicted RBP19.4■□□□□ 0.7
SMC1A-204ENST00000463684 MAP1SQ66K74 1059 aaPredicted RBP19.4■□□□□ 0.7
SMC1A-204ENST00000463684 SYNE4Q8N205 404 aa19.4■□□□□ 0.7
SMC1A-204ENST00000463684 FZD9O00144 591 aa19.39■□□□□ 0.69
SMC1A-204ENST00000463684 RGL2O15211 777 aa19.39■□□□□ 0.69
SMC1A-204ENST00000463684 OLFM4Q6UX06 510 aa19.39■□□□□ 0.69
SMC1A-204ENST00000463684 GPC2Q8N158 579 aa19.39■□□□□ 0.69
SMC1A-204ENST00000463684 JDP2Q8WYK2 163 aa19.39■□□□□ 0.69
SMC1A-204ENST00000463684 RTF1Q92541 710 aaKnown RBP19.39■□□□□ 0.69
SMC1A-204ENST00000463684 ABT1Q9ULW3 272 aaKnown RBP19.39■□□□□ 0.69
SMC1A-204ENST00000463684 RNF123Q5XPI4 1314 aa19.39■□□□□ 0.69
SMC1A-204ENST00000463684 PRAMEF22A3QJZ6 481 aa19.38■□□□□ 0.69
SMC1A-204ENST00000463684 PHACTR3Q96KR7 559 aa19.38■□□□□ 0.69
SMC1A-204ENST00000463684 WDR33Q9C0J8 1336 aaKnown RBP19.38■□□□□ 0.69
SMC1A-204ENST00000463684 PRKAR2BP31323 418 aa19.37■□□□□ 0.69
SMC1A-204ENST00000463684 HSPA8P11142 646 aaKnown RBP19.36■□□□□ 0.69
SMC1A-204ENST00000463684 CFAP53Q96M91 514 aa19.36■□□□□ 0.69
SMC1A-204ENST00000463684 ARFGEF2Q9Y6D5 1785 aa19.36■□□□□ 0.69
SMC1A-204ENST00000463684 COL3A1P02461 1466 aaPredicted RBP19.35■□□□□ 0.69
SMC1A-204ENST00000463684 CACNA1SQ13698 1873 aa19.35■□□□□ 0.69
SMC1A-204ENST00000463684 LMOD1P29536 600 aaPredicted RBP19.35■□□□□ 0.69
SMC1A-204ENST00000463684 EIF6P56537 245 aaKnown RBP19.35■□□□□ 0.69
SMC1A-204ENST00000463684 ABHD8Q96I13 439 aa19.35■□□□□ 0.69
SMC1A-204ENST00000463684 PSMD1Q99460 953 aa19.35■□□□□ 0.69
SMC1A-204ENST00000463684 GJA3Q9Y6H8 435 aa19.35■□□□□ 0.69
SMC1A-204ENST00000463684 SIPA1L3O60292 1781 aaPredicted RBP19.34■□□□□ 0.69
SMC1A-204ENST00000463684 CC2D2BQ6DHV5 1058 aa19.34■□□□□ 0.69
SMC1A-204ENST00000463684 CCER1Q8TC90 406 aaPredicted RBP19.34■□□□□ 0.69
SMC1A-204ENST00000463684 BEGAINQ9BUH8 593 aa19.34■□□□□ 0.69
SMC1A-204ENST00000463684 RSPH6AQ9H0K4 717 aa19.34■□□□□ 0.69
SMC1A-204ENST00000463684 DDX21Q9NR30 783 aaKnown RBP eCLIP19.34■□□□□ 0.69
SMC1A-204ENST00000463684 NUDCQ9Y266 331 aa19.34■□□□□ 0.69
SMC1A-204ENST00000463684 BCORQ6W2J9 1755 aa19.34■□□□□ 0.69
SMC1A-204ENST00000463684 NPC1L1Q9UHC9 1359 aa19.33■□□□□ 0.69
SMC1A-204ENST00000463684 NBPF26B4DH59 902 aa19.33■□□□□ 0.68
SMC1A-204ENST00000463684 NBPF10Q6P3W6 841 aaKnown RBP19.33■□□□□ 0.68
SMC1A-204ENST00000463684 PAXIP1Q6ZW49 1069 aaPredicted RBP19.33■□□□□ 0.68
SMC1A-204ENST00000463684 MCM10Q7L590 875 aa19.33■□□□□ 0.68
SMC1A-204ENST00000463684 NBPF15Q8N660 670 aa19.33■□□□□ 0.68
SMC1A-204ENST00000463684 NYXQ9GZU5 481 aa19.33■□□□□ 0.68
SMC1A-204ENST00000463684 ECE1P42892 770 aa19.32■□□□□ 0.68
SMC1A-204ENST00000463684 HLFQ16534 295 aa19.32■□□□□ 0.68
SMC1A-204ENST00000463684 GRIPAP1Q4V328 841 aa19.31■□□□□ 0.68
SMC1A-204ENST00000463684 CRY2Q49AN0 593 aa19.3■□□□□ 0.68
SMC1A-204ENST00000463684 RPGRQ92834 1020 aaKnown RBP19.3■□□□□ 0.68
SMC1A-204ENST00000463684 ADAMTSL1Q8N6G6 1762 aa19.29■□□□□ 0.68
SMC1A-204ENST00000463684 HTATSF1O43719 755 aaKnown RBP19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms