RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 TRAK2O60296 914 aa11.34□□□□□ -0.59
USP54-208ENST00000461520 RHOQP17081 205 aa11.34□□□□□ -0.59
USP54-208ENST00000461520 CYP2U1Q7Z449 544 aa11.34□□□□□ -0.59
USP54-208ENST00000461520 WASHC2CQ9Y4E1 1318 aa11.34□□□□□ -0.59
USP54-208ENST00000461520 ITGA6P23229 1130 aa11.33□□□□□ -0.6
USP54-208ENST00000461520 VWA5B2Q8N398 1253 aa11.33□□□□□ -0.6
USP54-208ENST00000461520 PHTF2Q8N3S3 785 aa11.33□□□□□ -0.6
USP54-208ENST00000461520 ZSCAN1Q8NBB4 408 aa11.33□□□□□ -0.6
USP54-208ENST00000461520 A2ML1A8K2U0 1454 aa11.32□□□□□ -0.6
USP54-208ENST00000461520 PZPP20742 1482 aa11.32□□□□□ -0.6
USP54-208ENST00000461520 NLRP3Q96P20 1036 aa11.32□□□□□ -0.6
USP54-208ENST00000461520 ARHGEF10LQ9HCE6 1279 aa11.32□□□□□ -0.6
USP54-208ENST00000461520 DNMT1P26358 1616 aaKnown RBP11.31□□□□□ -0.6
USP54-208ENST00000461520 TNRQ92752 1358 aa11.31□□□□□ -0.6
USP54-208ENST00000461520 SLFNL1Q499Z3 407 aa11.31□□□□□ -0.6
USP54-208ENST00000461520 NANOS1Q8WY41 292 aaKnown RBP11.31□□□□□ -0.6
USP54-208ENST00000461520 RAB6BQ9NRW1 208 aa11.31□□□□□ -0.6
USP54-208ENST00000461520 COG6Q9Y2V7 657 aa11.31□□□□□ -0.6
USP54-208ENST00000461520 POLR1AO95602 1720 aaPredicted RBP11.31□□□□□ -0.6
USP54-208ENST00000461520 CDC14CA4D256 554 aa11.3□□□□□ -0.6
USP54-208ENST00000461520 CLN3Q13286 438 aa11.3□□□□□ -0.6
USP54-208ENST00000461520 RNF135Q8IUD6 432 aa11.3□□□□□ -0.6
USP54-208ENST00000461520 RNF17Q9BXT8 1623 aaKnown RBP11.29□□□□□ -0.6
USP54-208ENST00000461520 EIF2AK4Q9P2K8 1649 aaKnown RBP11.29□□□□□ -0.6
USP54-208ENST00000461520 MYCP01106 439 aaPredicted RBP11.29□□□□□ -0.6
USP54-208ENST00000461520 GPC1P35052 558 aa11.29□□□□□ -0.6
USP54-208ENST00000461520 KRT76Q01546 638 aa11.29□□□□□ -0.6
USP54-208ENST00000461520 WASHC4Q2M389 1173 aa11.29□□□□□ -0.6
USP54-208ENST00000461520 SLC27A3Q5K4L6 730 aa11.29□□□□□ -0.6
USP54-208ENST00000461520 DOLKQ9UPQ8 538 aa11.29□□□□□ -0.6
USP54-208ENST00000461520 POU4F2Q12837 409 aa11.28□□□□□ -0.6
USP54-208ENST00000461520 POM121Q96HA1 1249 aa11.28□□□□□ -0.6
USP54-208ENST00000461520 CNTNAP3BQ96NU0 1288 aa11.28□□□□□ -0.6
USP54-208ENST00000461520 CNTNAP3Q9BZ76 1288 aa11.28□□□□□ -0.6
USP54-208ENST00000461520 CUEDC1Q9NWM3 386 aaPredicted RBP11.28□□□□□ -0.6
USP54-208ENST00000461520 DUOX2Q9NRD8 1548 aa11.28□□□□□ -0.6
USP54-208ENST00000461520 NEURL4Q96JN8 1562 aa11.28□□□□□ -0.6
USP54-208ENST00000461520 NLRP1Q9C000 1473 aa11.27□□□□□ -0.6
USP54-208ENST00000461520 SHANK2Q9UPX8 1470 aa11.27□□□□□ -0.6
USP54-208ENST00000461520 COL25A1Q9BXS0 654 aaPredicted RBP11.27□□□□□ -0.61
USP54-208ENST00000461520 GRIP2Q9C0E4 1043 aa11.27□□□□□ -0.61
USP54-208ENST00000461520 ZC3H13Q5T200 1668 aaKnown RBP11.27□□□□□ -0.61
USP54-208ENST00000461520 ABCC5O15440 1437 aa11.26□□□□□ -0.61
USP54-208ENST00000461520 ABCC3O15438 1527 aa11.26□□□□□ -0.61
USP54-208ENST00000461520 GNRH1P01148 92 aa11.26□□□□□ -0.61
USP54-208ENST00000461520 SEMA3FQ13275 785 aa11.26□□□□□ -0.61
USP54-208ENST00000461520 OXLD1Q5BKU9 147 aa11.26□□□□□ -0.61
USP54-208ENST00000461520 SV2AQ7L0J3 742 aa11.26□□□□□ -0.61
USP54-208ENST00000461520 THEMISQ8N1K5 641 aaPredicted RBP11.26□□□□□ -0.61
USP54-208ENST00000461520 PTPN23Q9H3S7 1636 aa11.26□□□□□ -0.61
USP54-208ENST00000461520 FGD6Q6ZV73 1430 aa11.26□□□□□ -0.61
USP54-208ENST00000461520 STAU1O95793 577 aaKnown RBP11.25□□□□□ -0.61
USP54-208ENST00000461520 IL2RAP01589 272 aa11.25□□□□□ -0.61
USP54-208ENST00000461520 PIP4K2BP78356 416 aa11.25□□□□□ -0.61
USP54-208ENST00000461520 RNFT1Q5M7Z0 435 aa11.25□□□□□ -0.61
USP54-208ENST00000461520 CNKSR1Q969H4 720 aa11.25□□□□□ -0.61
USP54-208ENST00000461520 KIF15Q9NS87 1388 aa11.25□□□□□ -0.61
USP54-208ENST00000461520 DAPK1P53355 1430 aa11.25□□□□□ -0.61
USP54-208ENST00000461520 ERBINQ96RT1 1412 aa11.25□□□□□ -0.61
USP54-208ENST00000461520 CPS1P31327 1500 aa11.25□□□□□ -0.61
USP54-208ENST00000461520 MED1Q15648 1581 aaPredicted RBP11.24□□□□□ -0.61
USP54-208ENST00000461520 UGGT1Q9NYU2 1555 aa11.24□□□□□ -0.61
USP54-208ENST00000461520 MROH1Q8NDA8 1641 aa11.24□□□□□ -0.61
USP54-208ENST00000461520 HSPA1LP34931 641 aa11.24□□□□□ -0.61
USP54-208ENST00000461520 USP4Q13107 963 aa11.24□□□□□ -0.61
USP54-208ENST00000461520 ANKLE2Q86XL3 938 aa11.24□□□□□ -0.61
USP54-208ENST00000461520 ESYT1Q9BSJ8 1104 aa11.24□□□□□ -0.61
USP54-208ENST00000461520 CHIC2Q9UKJ5 165 aa11.24□□□□□ -0.61
USP54-208ENST00000461520 CENPCQ03188 943 aa11.23□□□□□ -0.61
USP54-208ENST00000461520 RRP7BPQ9NSQ0 103 aa11.23□□□□□ -0.61
USP54-208ENST00000461520 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.23□□□□□ -0.61
USP54-208ENST00000461520 CROCC2H7BZ55 1655 aa11.23□□□□□ -0.61
USP54-208ENST00000461520 FAM181BA6NEQ2 426 aa11.22□□□□□ -0.61
USP54-208ENST00000461520 TOM1O60784 492 aa11.22□□□□□ -0.61
USP54-208ENST00000461520 PRDM15P57071 1507 aaPredicted RBP11.22□□□□□ -0.61
USP54-208ENST00000461520 ERVK-7P63135 1459 aa11.22□□□□□ -0.61
USP54-208ENST00000461520 NBPF10Q6P3W6 841 aaKnown RBP11.22□□□□□ -0.61
USP54-208ENST00000461520 NBPF15Q8N660 670 aa11.22□□□□□ -0.61
USP54-208ENST00000461520 VWDEQ8N2E2 1590 aa11.21□□□□□ -0.61
USP54-208ENST00000461520 MED14O60244 1454 aa11.21□□□□□ -0.61
USP54-208ENST00000461520 ARHGAP31Q2M1Z3 1444 aa11.21□□□□□ -0.61
USP54-208ENST00000461520 ANKRD30AQ9BXX3 1397 aa11.21□□□□□ -0.61
USP54-208ENST00000461520 RIPOR1Q6ZS17 1223 aa11.21□□□□□ -0.61
USP54-208ENST00000461520 XAGE2Q96GT9 111 aa11.21□□□□□ -0.61
USP54-208ENST00000461520 PIK3CDO00329 1044 aa11.2□□□□□ -0.62
USP54-208ENST00000461520 SOX11P35716 441 aa11.2□□□□□ -0.62
USP54-208ENST00000461520 PLPP7Q8NBV4 271 aa11.2□□□□□ -0.62
USP54-208ENST00000461520 GAS2L1Q99501 681 aaPredicted RBP11.2□□□□□ -0.62
USP54-208ENST00000461520 DYRK1BQ9Y463 629 aa11.2□□□□□ -0.62
USP54-208ENST00000461520 HRH3Q9Y5N1 445 aa11.2□□□□□ -0.62
USP54-208ENST00000461520 DEPDC5O75140 1603 aa11.2□□□□□ -0.62
USP54-208ENST00000461520 NPHP4O75161 1426 aaPredicted RBP11.19□□□□□ -0.62
USP54-208ENST00000461520 KANK1Q14678 1352 aa11.19□□□□□ -0.62
USP54-208ENST00000461520 CEP152O94986 1710 aa11.19□□□□□ -0.62
USP54-208ENST00000461520 SPATA31C2B4DYI2 1134 aa11.19□□□□□ -0.62
USP54-208ENST00000461520 RAD21O60216 631 aa11.19□□□□□ -0.62
USP54-208ENST00000461520 DBN1Q16643 649 aa11.19□□□□□ -0.62
USP54-208ENST00000461520 IQGAP1P46940 1657 aa11.19□□□□□ -0.62
USP54-208ENST00000461520 ALKQ9UM73 1620 aa11.18□□□□□ -0.62
USP54-208ENST00000461520 FLIIQ13045 1269 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms